Array 1 4413-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDV010000103.1 Clostridium frigoris strain DSM 14204 contig00103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4412 30 93.3 34 ...C..C....................... CTAAAATAAATATGTAGCTTATAGAGGGAAACTA 4348 30 100.0 34 .............................. TTAATAGGCTTAACCAAAGTCCATCACCACCATG 4284 30 100.0 37 .............................. ATACTCTATTTGCTCTTTCTTTTAAATCGTCTAACAC 4217 30 100.0 36 .............................. TTTGACATTCTTTTAACCCGTACCCTTCTATCATTA 4151 30 100.0 37 .............................. CTGCGCCAAATTCTACAAATGTAGTTGAGCTTCAAAA 4084 30 100.0 35 .............................. CCCCCTGTATTTAATGTTGGACTTATACCATCCGC 4019 30 100.0 37 .............................. AGTTTTAATGATAGCCTTGAAACTATGGTAAATAGGT 3952 30 100.0 36 .............................. CTCCAACCAATAAAACTATTGTTTTGTATTATATAA 3886 30 100.0 36 .............................. ACTTGCAAGAACTTATATATGCGATATAGATTATTT 3820 30 100.0 36 .............................. TTACATTACCTAAAGTTAAAAGCGTTAAAAAGACTA 3754 30 100.0 35 .............................. GAAAATGCATTCTCTTATTTTATATATAGAGGATA 3689 30 100.0 37 .............................. TAGCATCAATGGGTGTTAGTAGATGGAATTGTGACGT 3622 30 100.0 36 .............................. TATGAAGATAATATGAATAATAGGGGGGATAACGAA 3556 30 100.0 37 .............................. AGTTCAAAAATTGCATATAAAGGTTATTTACATACTA 3489 30 100.0 35 .............................. TATCCAATAGAAAAAGACAATGTGTATAAGGCTGA 3424 30 100.0 37 .............................. AACTTAAAATAATAAATTAAAAAGGCGGTTTTAATAA 3357 30 100.0 34 .............................. TTAATAATAAATGGTATGGCAGTACACTATGGGT 3293 30 100.0 36 .............................. GAATTTATGGCTAATCATAAGGGGGAAAATTAACAA 3227 30 100.0 35 .............................. CCTTTGCTCATACTAAAATAGAAGTCCAGTTTCTC 3162 30 100.0 35 .............................. AAGGAGCTACACAGCATATTAGAAAGGATAATCAA 3097 30 100.0 37 .............................. TCCTACTTGAACACTAGGAGGATTAAATTTCTTCCCT 3030 30 100.0 37 .............................. AAGCAAGCACAGGTGGAAAAAATACGGTGCTTTATGA 2963 30 100.0 37 .............................. TATAGGAGATGTTTATATTTATGACAACAATACAAAG 2896 30 100.0 38 .............................. CCAAAGAAGGTGAAAATAATGAATCATAGTTTCAACAT 2828 30 100.0 36 .............................. AAATATTCTGTTATACTATCAAGCATTTGCTCATTA 2762 30 100.0 37 .............................. TTAATATTGCATGATGCTATTAATGATTTTATAACAA 2695 30 100.0 35 .............................. GCAAATATGATAGATACAAGATTATCAGCACAAGG 2630 30 100.0 35 .............................. ATTAATATAACCTTTAGATAGTTCTATTGGCACTT 2565 30 100.0 36 .............................. CTATCTGTCCTTTGCTTAATGTGTTAAAGTATGTAG 2499 30 100.0 36 .............................. GCTAATAACTTTAAATGGTAATTCTTCTTCGATTAA 2433 30 100.0 37 .............................. TTGCTTCTTGATAACTATATGATGATGTATTAACCAA 2366 30 100.0 35 .............................. AAATGGTTGGGAGAAGTATCGTTTCATACTATCTA 2301 30 100.0 36 .............................. GAAATATGTTATTAGATTTGTATACCTAGATTCTGC 2235 30 100.0 36 .............................. AGGCGGAGCAGCTGTAAAAATGGGTAGCGATTATAT 2169 30 100.0 36 .............................. ACAGTTATACCTTTAATATTATTTCCAGCCAATATT 2103 30 100.0 35 .............................. GCTATTCGATGAAGAATATATACCCAAAAATCCAA 2038 30 100.0 35 .............................. AATAAATGGGTTGGATTGTGGGTAAACGTGTGTTG 1973 30 100.0 36 .............................. ATTATCAATTAGTGGCAGGCTTGAAACCTCAAACTA 1907 30 100.0 37 .............................. CATATTAGTACCCCCTTAAGCCATATTGACTACAGTC 1840 30 100.0 36 .............................. TGAAGTTTTTAAGGGAATTAAGCATATATATTCCAC 1774 30 100.0 36 .............................. AACGGATGCGAGGGAACGTCTACGAATGACTAAGCG 1708 30 100.0 36 .............................. ACTTCATCAATTCTTACCTCAGATGCTCCTGTACTT 1642 30 100.0 37 .............................. TATCTACTATTTGGCATAGCACTTATAACGCATCCAT 1575 30 100.0 36 .............................. GCTAGGAGATTTAAGCAAAGCAACCTTTAGTAATGT 1509 30 100.0 35 .............................. ACAGACGGACTTTTAACTAATCCAGTATATGACCA 1444 30 100.0 37 .............................. GATGGGAGGAACCCAAAAAAGTAATAAATACTAATGA 1377 30 100.0 34 .............................. ATGAAAATGGTGAATATAAAGTAATGTTTGGACA 1313 30 100.0 36 .............................. CTTTACCTGCTAATATGTTATCTTGGGGTAAAGACA 1247 30 100.0 36 .............................. CAATGACTTCTTTGCTTGAACAAACAAAAGAATACT 1181 30 100.0 36 .............................. AATCAAAGCTTAAAACAATAGAAGAACTATTTGCAA 1115 30 100.0 37 .............................. TTTGTTTGGATGCTTTAAATAAACTCGCATATGATGA 1048 30 100.0 36 .............................. TCGTCATTTGGTAAAATGATGTATTCCGTCTTTGTA 982 30 100.0 36 .............................. TCCTTCTTCATCTAATACACAAAAACTATTACATAC 916 30 100.0 36 .............................. TAATAGCATCTATTACGGTTCCCACTGTATAGTTGT 850 30 100.0 34 .............................. GTGATCTGCATTTAATATTGCTGCATTGTTATCC 786 30 100.0 35 .............................. TTTCAACCCCATTTACTATAAATGCTGGCATAACC 721 30 100.0 34 .............................. CTTACAACGATTTAACTTTACTTATTAAAACTGG 657 30 100.0 33 .............................. ATCTGTACCAGTCTCAACAGTATCTCCAGTTGC 594 30 100.0 36 .............................. CGTCTTATAGTCGGTCGCTGAGTTCTGCTTGGGCTA 528 30 100.0 35 .............................. AGGTAAAAAGAGGGTCTTGTTATATTTTCAGTAAT 463 30 100.0 36 .............................. TTGTCAAATTCTTAGGAATATCTTCACCCATTTTGC 397 30 100.0 36 .............................. AACATATAAGCGGAGTAATGCCAAGAGAGGAACACT 331 30 100.0 36 .............................. TATTGGTTTTCTTTCATTAACATATTTTTCACATTC 265 30 100.0 35 .............................. TCTTTCCCCTGCGTTGTTGTCCTGCTATTAAAATA 200 30 100.0 36 .............................. TCTTATAGCCTTTTTCTTAAACATTGGTGTAATTTC 134 29 93.3 0 .........................G-... | T [107] ========== ====== ====== ====== ============================== ====================================== ================== 66 30 99.8 36 ATTTAAATACATCTCATGTTAAGGTTCAAG # Left flank : TTCTTCAGAATACCCAATTTTACTCACCATGATATCTTTCCCCTTTCGTAAAGCCTATACTGTATAATATACTATATTTCTCTCTACGACAACTATCTTAACACATAGGGGTAATCACCTCTGTATACTTATTATATTAAATCGTTCGTTTAAAGTCTATATATTATATGAACGATTTATATGTATAATCACGACCATATAATGCCACTTTCGAGCCTGTTAGTTCTCGTTCGTATACGGTATACTCCAAATGAACACTTTATTTGTTCAATTAAGATTTAAGAATTCAAGAACTGTGTTGTCTAGTGGAATTGCTCAAACA # Right flank : GTGTTAACACTATCTTTGTTTTATTTATTTAAAACCCTGCTATTGCAAGGATTGTAGCTGTTTTTAGCACAAAAAACAATGACCCCCTCTATTTGGTATAATTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAAGGTTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 158-5037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDV010000054.1 Clostridium frigoris strain DSM 14204 contig00054, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 158 30 100.0 35 .............................. GGTAACTATGAACGTAATGACCGTATACCCAATAT 223 30 100.0 36 .............................. CATCCCCACTGCCATTGTTCCTTCAGGCTGGCTTAC 289 30 100.0 36 .............................. GCCAATACTTGAAAGATTATTGTGAAAGAATACACC 355 30 100.0 36 .............................. ACTCCACTTTAGACCATATTTCCCTTACTTTTTCAA 421 30 100.0 35 .............................. TTCGTAGTAATAGCTGAAACTTTAGTAGCTACTTT 486 30 100.0 36 .............................. TTTATATTGTACTTAGTTAGTTCCAAACTCTTTTCG 552 30 100.0 35 .............................. GTGGATCACTACCATTACCAAATCCAACAACGTCT 617 30 100.0 37 .............................. GTAGTTTAAGAAAAGCATTTAAAAATATTGCAATAGC 684 30 100.0 35 .............................. ATGGTTTAATATGATGTACCAACTCCACTTGTCTT 749 30 100.0 36 .............................. TACAACATTGTTATACCCTGCTTCTATACAAACTAA 815 30 100.0 35 .............................. TACATCCATTTGTATATCAAATCTAGCCATTATAT 880 30 100.0 35 .............................. CTATATGTGTAGCATTAATCATGTCTTCCAACCGT 945 30 100.0 35 .............................. GTAGACATTGTCTTAGGTAATAGTTTTTCTCCGCC 1010 30 100.0 36 .............................. TTGAATTTTCTGTACCAATGTATCCTCTGCCAAAAA 1076 30 100.0 36 .............................. TCAATACTTTGGAGTTACCATTGAGTACCTATGTGG 1142 30 100.0 36 .............................. CAACATGAATCGTATGGAGGAGGGGATCAGTCTTGC 1208 30 100.0 34 .............................. CTAATGGATTCAAGATAAAGATTACTGGAAGCGC 1272 30 100.0 35 .............................. ATACACATAGATAGTAATGAATTGAATGGAACGAT 1337 30 100.0 36 .............................. TAAAATATATAAGGATGAAACTTTATCAGCTATAAT 1403 30 100.0 36 .............................. AAGGCATTAGATGCATTTACTCTATACCCCAAACTT 1469 30 100.0 36 .............................. GTAAACAAATATCGGATAAAGAAGTCGTAGTTTTTA 1535 30 100.0 36 .............................. ACATGTAGTTTTTTTAAAAGTGTAACAGTGTAACAA 1601 30 100.0 36 .............................. TATTCTTTTTTTTATTATTAAAGTATGATTAAAGTA 1667 30 100.0 37 .............................. AAATATTTACTAACTGGTATACTAAAATCTTTACTTT 1734 30 100.0 34 .............................. CAGCAACAGGCGGTAAAAATACGGTCATTTACGA 1798 30 100.0 35 .............................. CTGGAACAATACTACGAACGCTGGCGTGTTCTACT 1863 30 100.0 35 .............................. CTAGAATTCGCGGACCGAATAGAAGACCGAAAGTA 1928 30 100.0 35 .............................. AATTTGCATATTGCTCATTGCCTATTACATTACCT 1993 30 100.0 36 .............................. AACAAGCGGACCTAATGTTTCAGGCCATAAATGCAA 2059 30 100.0 36 .............................. TCTTCTAGTGCTAGATAAAAAACCTGTGGTGGATGC 2125 30 100.0 35 .............................. TGATATTCTTTGGTAGTTACTGCTAAAGATAATTG 2190 30 100.0 35 .............................. GGTAAATGACCATATTCGTGAGGTCACGCAAATGG 2255 30 100.0 35 .............................. AAAGATATGTCTGAAAGATTACCTTTAATAGATGC 2320 30 100.0 34 .............................. TAGAAGGCGGTGCGGTTATATATGTACGCTGCAC 2384 30 100.0 36 .............................. CAGCAGCTAAGAAGTTAGAAGCCAGGTACCAGCTTA 2450 30 100.0 35 .............................. CGGGAACTGGTAAAGCAGAAGCTAAGCCTAGACAC 2515 30 100.0 36 .............................. ACATTTAGAAAAACAGTTAAAAGCAACTGTAGAAAA 2581 30 100.0 36 .............................. TTGGTTCAAGTTGTAAAAAGTGCGGTGAATTTATTA 2647 30 100.0 34 .............................. TTAATTGCTTTATTAAAGATAGTTTTACTTTCTC 2711 30 100.0 35 .............................. CATCAATCGTTCCGCAAAGTGCTAATTCTACACTT 2776 30 100.0 34 .............................. CTTCTATATATGCAAAAACCAAATTTTTTAAGTC 2840 30 100.0 36 .............................. TAGACACAGATAAGCCTGTGATACTTACAGAGGGCA 2906 30 100.0 36 .............................. TTAAAATAACTATTTACAGCACTAAAAAACAAAATT 2972 30 100.0 36 .............................. AAATACAAAATTGACAGATAAGTCAACTGGTAAGTC 3038 30 100.0 35 .............................. ATAGCTTTCTTTCCTTGTCCTCTAGTGCTTTCTTT 3103 30 100.0 36 .............................. TATAAGAATTGATGGAATGTATGGTCGTAGAGATAT 3169 30 100.0 35 .............................. GGAAAGAATATAGGTAATAGACTAGCAACTATTAG 3234 30 100.0 37 .............................. CTATTACAGGCACCGTAGGGGCATTGATTACTACAGG 3301 30 100.0 35 .............................. CAAATATTTGTGTAATTAACGGATGTAATTTGTTA 3366 30 100.0 35 .............................. ACTAATCCCTTAAATATACAAGGGTTTGCATTTAA 3431 30 100.0 36 .............................. TTTTAAATTGTGAGCAGTAAAGGATTCCTTGACAAC 3497 30 100.0 35 .............................. CTTTCAATTTTCTTTCTTCTCTTTTATAATTTTTC 3562 30 100.0 37 .............................. CTGCCGAAGCAATTGCTTTCCATAATGTACTAGAAGC 3629 30 100.0 36 .............................. GTCTATTTCTAAACCTAGGCACTTTTCTTCTAACTC 3695 30 100.0 37 .............................. GTGAACATACATTAGATGAATTAGAGAATGTTATAAA 3762 30 100.0 37 .............................. AAAAGTTTTGGATATATTTTATATTCAATCTTTTTTC 3829 30 100.0 34 .............................. GGTGCTAGTTCTGGACAACTTAACGGTTGGATTA 3893 30 100.0 37 .............................. TAACTATAGAAGGTGCAAGTGATATAATGGCTGTCGG 3960 30 100.0 34 .............................. AAGAAAGAGTTGCCGAAGCTTTAAGGTTAGAAAC 4024 30 100.0 36 .............................. ATGAACTCAACATAGCACTTAATGAATTTATTAGTA 4090 30 100.0 37 .............................. TCTAAAAATTCACGAACTAACTTACTTATTTGATTGC 4157 30 100.0 35 .............................. GCAGACGTTTTAAGCAACAATAAAGATTTAAGTAC 4222 30 100.0 36 .............................. GCTTAGCGCGAAAGACAAGGACACTAAAACAGATAT 4288 30 100.0 34 .............................. TCATAACCATCAGCTGTTGCAGTTAAATTTGTTA 4352 30 100.0 36 .............................. GTTGGAGTAACATTACATACTGTATGTCCTAATTTT 4418 30 100.0 36 .............................. CATCACTTGTTATCACTTGATCACCTCCTTAACGTA 4484 30 100.0 34 .............................. TTAATACAGCTTACTGTTTACCCTATTTTTATTA 4548 30 100.0 34 .............................. AAATTGTTATTGGTTCAATAGCAGGCTTAATAAT 4612 30 100.0 36 .............................. GTTATTGCTAATGCTGCTAAACCTAATGCAAACTTG 4678 30 100.0 36 .............................. AACTATTTATTAAGAGGTGATATAAATGTTAATTGC 4744 30 100.0 36 .............................. GTTGGAGTAACATTACATACTGTATGTCCTAATTTT 4810 30 100.0 37 .............................. CTCTTACGAGTGCCTTAAGTCTACAACTACTTGCAAT 4877 30 100.0 34 .............................. TAAGTTTTTACTTTTGAGTCCATTAATATAACCT 4941 30 100.0 37 .............................. TTAAAGCCTGTTCTATAGTTATAGTCTCGTCAGAAAT 5008 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 75 30 100.0 36 ATTTAAATACATCTCATGTTAAGGTTCAAG # Left flank : TAACAAAACTAATGTTTCATTCCTTTTAGATATATTTTCACTTTTCAAAGTACAATTTAAATCTTAAAATTTTCAATCTAGTTTTTTCATAGGTTAGTTAACACTATCGTTAAGGTTCAAGAACTTATATTGCTAGTTTGGAGAATTATTCAATATGA # Right flank : GTAAGACAAACAGGTAGTTTTTAAAGCTAGAAACCCTTCTTATTCCATGTATAGCTGATTTTCATTGTTTTTTACCAACCTATTAAGTTATCTTTATATAATTCAGGATAATATGTGGAAATCCCTTTATTTTCAATAGCATTCGTCTTTTTAATTTTAAATGAGGTTGGTAAAAACTCATTATAAAATTAAAGCTTCACTGTTTTCAATATTTACCCCTATTGTTTCTTCTCCAAAGCTTTTTTCGTTCATCATTTTTATAATACTAATGAAATCTTCTTTCTCATTAATTACTTTTTTTAAATCAGACCTTAATTTTATTAAATTAGCCGGTGTAATAGTACCTCTAAAAATAGATTTTTGATGATGCTTAAAATATTTCTTACAAACCTTAAACACTTTATTTACCCGTTTTTCTTTTATATCATAAAAAACAAAAACATAATTATAATTTATATTTTTTGCCATACTACCTCATCTCCTTAAGACTAAAAGGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAAGGTTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 12282-9534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDV010000010.1 Clostridium frigoris strain DSM 14204 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12281 32 100.0 33 ................................ CAGTAGAAACAGTTAGTCAAATAATAGAGTCTA 12216 32 100.0 34 ................................ AACATTAAACCCTGACCAAACTTCATACTTCTTA 12150 32 100.0 34 ................................ CAAACATAAGTTAGATTATCTCCATCACTATCTT 12084 32 100.0 34 ................................ CATTATCGTTTCACCAAGGTATCTACTAAATTTA 12018 32 100.0 34 ................................ CTATTAAGGAAGTACTTAACGATATTGATAAAAC 11952 32 100.0 34 ................................ TTTTGATGATATATGGCATGTACTTGAAGATAAT 11886 32 100.0 34 ................................ TGGTACTACCTATAGGGGATCAACTTATAATAGC 11820 32 100.0 34 ................................ AATGATGGTGTATGTAATATATTTACTACTGATG 11754 32 100.0 34 ................................ TTTAAAAGTAGATCATATATCAGAAATATTAATA 11688 32 100.0 34 ................................ TAAGCCCCTACAAATTTCTTAAATCATGTGTATC 11622 32 100.0 34 ................................ TTTTGACCAGATTAGTGAATTAAAGGGTTTTGGT 11556 32 100.0 34 ................................ TTATAGTTTCCTATAAGCTCGGCATACATTTTCA 11490 32 100.0 34 ................................ CTACTGGTCCAGTTATAAATGTAAAGATTGCTAC 11424 32 100.0 35 ................................ TTGATTGCAGTCTAAACATTTATGCATATCCATTA 11357 32 100.0 34 ................................ TGACCAAACATCATCACAAACTTGAGGTATTGTA 11291 32 100.0 34 ................................ TTTACCGCAATTAAAAGATTGAAAAACTTAGGTT 11225 32 100.0 34 ................................ AAGAGAAATGTGTAAGAGTATTCGCAAGTAGAAG 11159 32 100.0 35 ................................ ACATGAGATTGTAAGGCACAGAGTTGCTTCATATG 11092 32 100.0 35 ................................ CAATACCAGGCACTTCCAATGCCCATTGCTTATAA 11025 32 100.0 35 ................................ CGAACTTGAAGATAAACTTAACGAAGTATTATTTG 10958 32 100.0 33 ................................ TAAGAGGTCTAGTAAGGTACTCTTACCATTACT 10893 32 100.0 35 ................................ CTAGTATACAAGAAGTTAGAATAGTAAATTGTGGC 10826 32 100.0 35 ................................ TCATAGTATCGGCATATTGTTTAGCCCATGGAAAT 10759 32 100.0 34 ................................ TTTGATACAGAAAAACAAGCAAAAGGATTTTGTG 10693 32 100.0 35 ................................ AATATATAAGTTATTAATCTTTGCTTGTATTTCAA 10626 32 100.0 34 ................................ CTGGTTTGGCAAAGTATTTCATCATCGCTTAACA 10560 32 100.0 35 ................................ CCAAAGCGTATGTAATAGTTTTTGCGTATTAGATG 10493 32 100.0 34 ................................ TTTTATTTTAAATTTATCCTGTCCGTAACTAGAC 10427 32 100.0 35 ................................ TATTATTTTATATCCATTTCGTTGAAACTTCCTTG 10360 32 100.0 35 ................................ ATCCATATAAGTAAAAGTATGGCAATATGTGTATA 10293 32 100.0 34 ................................ TTTCGATGTCTTTTATCTCGTCTGATGTGAAATA 10227 32 100.0 34 ................................ TTTAATATAAGTTTGATTGTTTGATATTCATTTC 10161 32 100.0 35 ................................ TTGTTAAATTACCTAACAATGATGTTTTACCGCTC 10094 32 100.0 33 ................................ ACTTTTTTTAGCTTTATATGCAGTACCAGTTTT 10029 32 100.0 33 ................................ ATTGTTATATTCCTCATGTGCTTTTATAGTAGC 9964 32 100.0 35 ................................ TGCACTGCAATTTAGTAAAAATAAAATTAAGGGGT 9897 32 100.0 34 ................................ TAAATAAAGTGGCACTCTATATCCTGCTATGATT 9831 32 100.0 34 ................................ TCTTGCACTTACTGTTTGTTTACCGTCAATATTT 9765 32 100.0 34 ................................ CGATGAAAAGGTACTTTAAAATTAGTTTTGAAAA 9699 32 100.0 35 ................................ TGTGTCTGCATCATCCTGGCCATTATCCTGTTGAG 9632 32 100.0 35 ................................ CAGTCGCATACCCTACGTAACCACCACCCTTAAAT 9565 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 42 32 100.0 34 GTCGCTCCTTACATAGGAGCGTGGATTGAAAT # Left flank : ACTTGGATGGATATCCTCCATTTATGTGGAAGTAGGTGATAAAATGTTAGTACTTATAACATACGATGTAAATACACAAACGCCAAGTGGCATGAAACGGTTGCGCCAGGTTGCAAAACAATGCGTTAATTACGGTCAGCGTGTTCAAAATTCAGTTTTTGAGTGTGTATTAGATGCAGCTAAATGCCGTGAGGTTCAGCATAAGCTTGAGCAAATCATTGATAAGGATAAAGATAGTTTGAGATTTTATTATTTAGGGAACAATTATAAAAATAAGATTGTGCATATAGGTGCAAAGGAATCAATTGATGTTGAAGGTACGCTTATAATTTAGTGCGTATGTTAAGCAAACATAAAATCGTGGAGCCTTCGCACCATAAATATAGTAAAAACCTTTTGTTAAAGGTGAAATATATGGTAGGAGGGATATAATTTAACAAAAAAAGTGCAAAAATATCTTTAATCCTTATAAATTTAACGGATTTTTGGCCATTTTTGCT # Right flank : ATTAGGTTTCTGCCGGGCTGTTGTATAAAGTTTTGGTCGCTCCTTAATTATCATTATGATACTTGTGAAAATGAAAATATATTAGGATACAGCTTGCATGGTTTATTTATTGGAGAGAAATAGGCGAAATATTTTATAACCTTAATAGTGATATATAAGTGTAGAAAGTATGTATTACAAGGTATATACAAGATATAGCCTATCAATTTTAAAAGGAGAAACTTAAGCAGAAAAGATTAAAAGAAGCTGAAATCAATTGTGAACTTATGAGCTTTTCTATTTTGATGTTCGTATATAAAGTAAATATTTAGAAGTAAGGTGAAATATGTATAAGCTTATTAGAATTACAACCCTTGGTTTAATATTATGTATAGTGTTAATAACGGGATGTTCTAAAAGCGTGTCACCTACTATAAACGAACTTAAATTTGAGAATATAACATCTGCAAGAATTGAATTAGCGGGAAGTGTATTACCTGGAGCAACAAGTCCAATTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACATAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //