Array 1 64749-65753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNN010000021.1 Cronobacter muytjensii strain MOD1_GK1258 cmuyGK1258_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64749 29 100.0 32 ............................. AGGAAAATGCTGGCGCTGATTCCGTACTTCCA 64810 29 100.0 32 ............................. GCTCGCCAGGCGCTTTGCAACAGCTGCATAGG 64871 29 100.0 32 ............................. CCTGGGCGCAAGAGGCTGGCTGGAAAGCAGTC 64932 29 100.0 32 ............................. GTGGAGCAGGCTTACGGCTCCGGGGATACCTG 64993 29 100.0 32 ............................. CGCTCATTCATGCGGGCTGGTTAATAGAAGAG 65054 29 100.0 32 ............................. GCGGCCTTTTTTATTACCTGAAATATGAGGAC 65115 29 100.0 32 ............................. ATACGAGCGGCCGCTGGGCGCCGGGGCGTCAG 65176 29 96.6 32 ..................A.......... TCCTGGCCCATTTGTTTAAACTGTTCAGGGGT 65237 29 100.0 32 ............................. TAATCGCCGCCCACCAGGTAAGCGGAAACGCT 65298 29 100.0 32 ............................. CGGCGCAGCTACTTGAGGTATGGGGCGCGACT 65359 29 100.0 32 ............................. TCTGCACGTTGGGTTCAAAGCCTGAAATCGTC 65420 29 100.0 32 ............................. GCCGTATTCAATGATCTCGCGGCCAGCGTTTC 65481 29 100.0 32 ............................. CGGCGACAAACGTTTCCATTTTTTCATCCTTT 65542 29 100.0 32 ............................. TATTACCTTTTGGTGGGGTGTTTTCTGAATAA 65603 29 100.0 32 ............................. AATCTGCCCGGCCAGCAGCAGGGGCGAACCAT 65664 29 100.0 32 ............................. AACTTGCAGACATCAGAATCGACCTCATCGAT 65725 29 82.8 0 .........A.CT......AA........ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATTGCTTTTATTGTCGCCAATATCAACATCAACTACCGACGACCCGCAGTGCTGGGCGATCTGCTGACTATCACCAGCGAGGTAAAACAGCTTAACGGCAAAAGCGGCGTGCTGAGTCAGGTGATTACGCTTGCGCCTGAAGGCGAGGTGGTTGCCGATGCGCTTATCACCTTCGTGTGTGTCGATCTGAAAACGCAGAAAGCGCTGCCAATTGAAGGCGAGCTGCGCGAAAAACTGGAAAACATCACAGGCTAAATTCTGCAATCACGCCGCCTGTGCATGCAGTGATGGATTTCTCTCCGTTAAAGGCGAACAATCCGGTAGATGTTATCGGCCCGGAAGCACTGTAAAAAAATGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGATGTAAATGTTGGTAGGTTGTGGCGGGCGATAAAAAGGTAAATAAAACAAAGTATTGTCTTTAGA # Right flank : GGAACAGGGCGGTGAGTAGAGACCAGAGAATACGCGCCCTCTGGCCCCCACATTCTTCAGCGGCGTTTATACTTCAAAGCCAACGTAAAATTTCGCAACACTGCGCAACAAAGGAGAGACGATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGCTGCACGCGCATCTTATTTGCCACTGCCTGCTGATTGAAACCCAAAACGACGGGCTGGTACTGGTGGATACCGGCTTTGGTCGCGACGATATGCGCCATCCTGGCCGTCGGTTGCCGCTGTTTTTTCGGGCGCTGAACAATATCCAGTACCGTGAATCATTAACGGCGTTGCATCATGTTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACATATCGTGCTGACGCATCTCGATTTCGACCACGCAGGCGGTATCAGCGATTTCCCGCATGCGCAGGTGCATCTGATGCAACAGGAGATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4346-1941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNN010000074.1 Cronobacter muytjensii strain MOD1_GK1258 cmuyGK1258_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4345 29 100.0 29 ............................. GCTAGTTTTTGTAGTTTTATCATCATCAT 4287 29 100.0 32 ............................. ACCGTGAAATCAACCCTGACACTGGCGACTAT 4226 29 100.0 32 ............................. GAGGGATTACCAGGCTGAATGAGGTATATTTT 4165 29 100.0 32 ............................. GTGGGGGTTACGACCCCGAGGACTCCTATTTT 4104 29 100.0 32 ............................. CCTGTCGTTTTCTTCTTCTCCCCCTTCAATTA 4043 29 100.0 32 ............................. CACCGCGACATCTGCCTGTTTAGCCATCGAAA 3982 29 100.0 32 ............................. TGCTATTGCCACGCGCTCGCGCTGCTTCGCGG 3921 29 100.0 32 ............................. CCTGTAGCTCGCGCATCGCTGATAAATCGACG 3860 29 100.0 32 ............................. TGGATGCAACCTGTTGAAGTTAACGTGATTAG 3799 29 100.0 32 ............................. CGCTGGTGGCGGTAAGCCAGGTGCGCGGGCAT 3738 29 100.0 32 ............................. ATGAAGCCCATTTTTTCCAACCTCATGGCGTA 3677 29 100.0 32 ............................. GCAAAACGCGCATTACTGACGCCGTCAGCAAC 3616 29 100.0 32 ............................. AACGGGCGAAACCTGACCCGGCAAAACATCGA 3555 29 100.0 32 ............................. TTTATCAACTTGCCCGTATTGAGCGCCGTCGA 3494 29 100.0 32 ............................. AACGCTCTTTGCCGGCGCATTGGCACCAATAA 3433 29 100.0 32 ............................. GCGAGCCAGACCATTTCCCTAATCCGCCCTTT 3372 29 100.0 32 ............................. GTCACCGGCGCGCTAACCGGCACGGCCATCGG 3311 29 100.0 32 ............................. CCAACACCGTGGCGCCGGGCGAATCCCACGCC 3250 29 100.0 32 ............................. TGGAGGCGCTACTTGAGGCCCAGCAACAGGCC 3189 29 100.0 32 ............................. TTTGGGAGCAAATAGAAAAAACAGGAGCCTCA 3128 29 100.0 32 ............................. CCACCGGCGCAGCAGGGCGCAGGCAAGCAGAC 3067 29 100.0 32 ............................. ACATGATAGCGATTGACGAAGAGGAGGCTATA 3006 29 100.0 32 ............................. TTCAATAATCTCATATGCGCCCAGGACAAGAG 2945 29 100.0 32 ............................. CACCACCCTGTTCGTGAACACGTCGTATTGCC 2884 29 100.0 32 ............................. GAGTGGATGTGGGCAAAACCCGACGCAGGGCT 2823 29 96.6 32 ............................C TCCTGTGCGTCGCTCGAAGCCGCTATGGCCTC 2762 29 96.6 32 ..........T.................. GCTGACCCCAATCAGTGTTTATGACGGCCTTA 2701 29 100.0 32 ............................. TGGTCCGGGCCAATCTCTGGCGAAAAACCGAG 2640 29 100.0 32 ............................. CACGATTTCCCAGGCACGAATGCGGCGCGGGA 2579 29 100.0 32 ............................. CTGTAGAGAGCGGAACTGTCTTCGTTCAGAAT 2518 29 100.0 32 ............................. TGGCGGCGCATATCGACGACGTGCGCCCCGTC 2457 29 100.0 32 ............................. TCTGACTGACTGATGAGCGCCACGACGCGCCG 2396 29 100.0 32 ............................. AAACGCGCAATTACGTGGCGAAAGTCACGGGC 2335 29 100.0 32 ............................. CAGGTTTATAACGGTTGTAAAAACGCAAAAAA 2274 29 100.0 32 ............................. CATATACAACGTCATGCATAGCCCAAAAGAAC 2213 29 96.6 32 ..A.......................... AAAGTTGGTTTTGACGCCCTAATTGATCAGAT 2152 29 100.0 32 ............................. CCCGCGCACTCAAACGCACGGCGCAGCATATG 2091 29 100.0 32 ............................. TCGCCACCCTCCCGCATGAGCTGGTCAATCAA 2030 29 100.0 32 ............................. GAGTAACCGAGGGATGACAGCTGCTGTTTAAC 1969 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGCGAGCGGGGATAAACCGTGATATCGGCTGGCGCTGACCAGGGTAACGG # Right flank : TCCAGCCAGCCGACGCCCTGTTTCACGCTCCTTTGACCATGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGCGCTCTCGCCGTCACCGTCACAACATGCTGCTTCTTCTCTTATCCAGAGTATCTGTCTCTACTTTTTCTTATCCGCGAAACGCAATATCCATTTCCGCCACGTAGCGTTATATATTTTGTTTTTTATTTGCAAATTCATTTAACTGTCATTTATTTGTCATCTTATTGTCATAATAGCTTGTCGAGTATCGCATTTTTGAAACGTCTTTTTATAAGAAAGAGCTTAGTGCTGGATCTTAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNN010000078.1 Cronobacter muytjensii strain MOD1_GK1258 cmuyGK1258_contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201 29 100.0 32 ............................. AAAAAACAGGTGGGTTTTGCCTGTCAGGGTGA 140 29 100.0 32 ............................. GTAAAAAATTGGAGCGTTGAAACGTAATCGTA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTGGCGGCGGGCGACATTGAGCCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAGAATGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAGCTGCGCGCCGGGGTTTATGTCGGCGATGTCTCTAAGCGGGTACGTGAAATGATCTGGAATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTGGTGATGGCCTGGGCTACGAATAATGAATCCAGCTTCGATTTCCAGACGTATGGCGAGAACCGACGCATTCCGGTGGATTTAGACGGTCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGGAAAATTTCCTTATAAAACAGTTATATATTTTTAGA # Right flank : GGCTTGCCCGCTGCGCGAGGAACCAGCTTTAACGTGTTCCCCGCGCGAGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //