Array 1 38433-39714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYD010000011.1 Clostridium botulinum C/D strain IZSVe-TV_9659_15 NODE_11_length_71930_cov_125.422_ID_7492, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38433 30 100.0 37 .............................. GCCTATATCGAATCGAATGAAGAGACTAAAAAGTTAG 38500 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 38565 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 38631 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 38698 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 38764 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 38830 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 38894 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 38961 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 39027 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 39093 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 39158 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 39224 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 39290 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 39356 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 39421 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 39488 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 39554 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 39620 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 39685 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 46627-48032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYD010000011.1 Clostridium botulinum C/D strain IZSVe-TV_9659_15 NODE_11_length_71930_cov_125.422_ID_7492, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46627 30 100.0 36 .............................. ATTTGGTAATGCAGGTATACAAGTAGTACAACAACC 46693 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 46758 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 46826 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 46893 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 46959 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 47025 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 47091 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 47157 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 47222 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 47287 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 47353 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 47417 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 47483 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 47549 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 47614 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 47681 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 47745 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 47812 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 47878 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG AAAC [47902] 47942 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [47956] 48003 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.0 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 4988-2067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYD010000064.1 Clostridium botulinum C/D strain IZSVe-TV_9659_15 NODE_64_length_14716_cov_51.6137_ID_7598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4987 30 100.0 37 .............................. TTAGTAGCTTTATCTTTATCTACTGCACTAGGTTCAG 4920 30 100.0 36 .............................. CCTTGTAATGTTTTTACCTCATTCTTTAAAGATTCT 4854 30 100.0 35 .............................. CCAATTGAACTCATGAAAGAAATTATGTTAAATGG 4789 30 100.0 36 .............................. AGTAGTGGTGGTATCGATAGAATTGATTCTATTTGT 4723 30 100.0 36 .............................. GTATTAGAGTTATTGTCGTGCCTTTTACTACGTTTT 4657 30 100.0 35 .............................. AGCGTAGATACAACTTTAATTTACGCAGAATTAGA 4592 30 100.0 36 .............................. ATTTTTAGTTCTGCACAAACGAGTGGAATTATAATT 4526 30 100.0 36 .............................. TAGTGTCTAACTACTCTATTTATAGATATATTGTAC 4460 30 100.0 37 .............................. TAATTAAATTATTTAACAAATTGTCTTTTGTATTACT 4393 30 100.0 37 .............................. TTACAACAAATGTACCATCTTCAAAATCCATTTCAAC 4326 30 100.0 36 .............................. TCAAAAACAGTACTCAATCCGGATTTTTCTATAATT 4260 30 100.0 37 .............................. TTTAATCACTCCTTTCTAAACTGGTCGAATTCGACCA 4193 30 100.0 35 .............................. AGAAAAATGGACAAGTCTTTGGCAAAGTTGTTTAA 4128 30 100.0 37 .............................. TGATATATTAGCATAAGTCGTCCCGCGAATTATAACT 4061 30 100.0 34 .............................. TTGCCCTCTATGAGATAATTATTGTCTTTAACTG 3997 30 100.0 35 .............................. AATAGTACACTAAAGGCGTTACTATCTGTTGCATT 3932 30 100.0 37 .............................. TGTCATAATCGCAAAATAACACAATAACCACATCCCC 3865 30 100.0 35 .............................. TAACCAGCAGTTTCCCAATATGGCGGATCACAGAA 3800 30 100.0 34 .............................. CTATCCTCTGGTATCTTATCTATATTTAAATTAT 3736 30 100.0 35 .............................. AACTTCAAGGGGCAAATTTTTGTAAAGTGAGGTTG 3671 30 100.0 36 .............................. TTGCGTGCTTATGGTTAATAAAAGTTATTTTACAGA 3605 30 100.0 37 .............................. GAACCTGTACCATATAGTATTTTTAAATTTCTAGTTA 3538 30 100.0 35 .............................. AAGTTTTCTATAAAAGTATGTTCAGCACTTGAATT 3473 30 100.0 36 .............................. AAGGTAACTACAAAAGACCCCGTAGTCTGGTATATT 3407 30 100.0 35 .............................. TTCCATTTTGTTCTAGCATCTGCAATCGCTACATA 3342 30 100.0 35 .............................. TACAAATGCAATACAGAATAGTTATAAATATTTTT 3277 30 100.0 37 .............................. AAAGATAATTTAAAGGGGTTTAACGTAATTACTTTAA 3210 30 100.0 36 .............................. GAAGAAAACTCACAGTTTTTAATAAAATCTATAATT 3144 30 100.0 37 .............................. ACGTCTTCTAATAGTCCTTCAAATTCTATTGGCATAA 3077 30 100.0 36 .............................. ATCTTTTTGTTTTTCTTCCGATCTTTGTACTTACTG 3011 30 100.0 35 .............................. TATTCTAACTTCACATCCTTTTAAAGGTCGCCATT 2946 30 100.0 36 .............................. TGGGAAAAGTTACGCACGAAACTTCTTTAATGTCTA 2880 30 100.0 35 .............................. TTTCCAGTGAGCAATAGAAAACAGTACCTTTTCTG 2815 30 100.0 36 .............................. CTTGATTTATTGAAACCATATTGGGAAATGGCGAAC 2749 30 100.0 34 .............................. AGAAAAATAACTTCTAAACTTAATTTCAATATAT 2685 30 100.0 36 .............................. TCAATTAAAATAAGGGCATTTCGAACATCTACTATG 2619 30 96.7 34 ...............T.............. AATTTTATATACATTTTTAAAATTTTACTAAAAA 2555 30 100.0 36 .............................. ATTAAAAGTTAATATATTTTTTAATTTAATTTTATT 2489 30 100.0 36 .............................. ATTCTAAGTATCCATAAAGCTTGTTGAGCCACATAC 2423 30 100.0 35 .............................. AATGAAATAGGCAATTCATAATCTACAGTGTTTAT 2358 30 100.0 35 .............................. ACGTTTGAATGTGCTAAAATATAATCTTCAACTGC 2293 30 100.0 36 .............................. CATGAAACAATAGCTGAAAATCAAGAGAGGGAACAC 2227 30 100.0 35 .............................. AAAATAAGACATGCACTTCTTTTGCCATCTTTTGT 2162 30 100.0 36 .............................. CACCTTCTTTCTCTTTTGGTATCCATATTTATTCTT 2096 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAGCTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGTAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATC # Right flank : GCTCTTGCTTTAATTTTTCCTCAGAAATATCTTTATTAAAGAAAGTCAACCATCTTTGAAGTCTATCTTCTTTTAAATTCTTTTCTTCTAGTTTGTTAAATTTAGGAACCTCTATAAAATGAATTTCAACTAAGTCCGTTAACATATAGTCTTTGTATTCATCTTCCCAAAGGTGAAACTCAGTGTGAAATTTATCTAAGTTTATATATTCAAAATCTAGTATGTTTATAGTTATTACCTTTTTAAAATTTCTATTATGCTTTTTTTATTATTAGAACTAATATCTTTAAAATGACTAGTACACTAATTAAAATAAATAAAAATTTTTAAAATGAAAATATAAAATCATCGTTTACCAATAATCAAGCTATATTTTGACAAGTACCTGTTACCCTAGTGAGAAGGTTTATCTAAGAACCTGTTGCTAAAATAAATTATCCATTGTTTTTAGATATGTGATGAGAACTTATATATCCTCCATTTTCACTTTTAGATAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //