Array 1 1303448-1302098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011110.1 Pseudomonas chlororaphis strain PCL1606 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1303447 28 96.4 32 ................A........... ATGCCGATAACGCACGCACCGTGCGCCCAATC 1303387 28 100.0 32 ............................ CCCGAATTTCCCCGCTATCGCCCGCCGGCCTT 1303327 28 100.0 32 ............................ TAAGCGATTGGTGCGAGGCAATACGCGCCAAC 1303267 28 100.0 32 ............................ ACGACCCCAATCGAACGCATAAAGCACCCAGC 1303207 28 100.0 32 ............................ TGGACAAGCTCGGCTTGCCGTCGCTGTTGGGC 1303147 28 100.0 32 ............................ ATGAAAGGCGTCCCGTCCGCTGACTCTCTTTG 1303087 28 100.0 32 ............................ TTCGCACCCAGGTGGCCGAGCGGGATGCGCTC 1303027 28 100.0 32 ............................ AACGCGACGTTGATTTCGTAGCGATTGCGGTT 1302967 28 100.0 32 ............................ TGTTGACCGCTGCCGATGGCTTCGAATTGGAG 1302907 28 100.0 32 ............................ AAGTGGCGCACCTCGTTCAAAATGACCCAGGT 1302847 28 100.0 32 ............................ GTGCGCGAATCGATCAGCTCGGCGAACTCGGC 1302787 28 100.0 32 ............................ TGAACGAAGCCGATCAACTGAACGACAACCAC 1302727 28 100.0 32 ............................ AGGGACTTGCTGTTGAGCGCGTCCAGGGCGTC 1302667 28 100.0 32 ............................ ACGAGCTGGGCTGTTCGTTGTCCTTTCGTGTA 1302607 28 100.0 33 ............................ TCAACCAGGTAATCGATCGGGATACCGTTCTCC 1302546 28 100.0 32 ............................ GGGTCAAGGCGAACCTCGGTAACTGGCTTCGA 1302486 28 100.0 33 ............................ TGGTAAAGGGATCGCTGCGCTTCATTCCTCACC 1302425 28 100.0 32 ............................ AGGCTGAGGTGATTGCTGATCATGGTGCCCTC 1302365 28 100.0 32 ............................ TTGAGCTGGAACTTATCCGCCATCACTGCACC 1302305 28 100.0 32 ............................ AACAAGACGCAAATCGCCAAGTGGATCGCCGA 1302245 28 96.4 32 ............G............... ATCAGATGCAGGCAGGTGATCTGCGAGCTCTC 1302185 28 100.0 32 ............................ GGGAATGCAGCCTTGACCCGAGCATGGTAGCC 1302125 28 75.0 0 .........T..G..........CTCCC | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGCGCTCGCCAGCCTGCTGGCGCTGAACTGGCTGAGCGGCATGCGCGACCACGTGCAGGTGGGCGAGCCAAGCCCGGTGCCCGCCAACGTGCGCTACCGCCACGTCAGCCGGGTCCAGGTGGACAGCAACCCCGAACGCCTGCGCCGCCGCCTGATCAAGCGCCATGCCCTGAGCGAAACCCAGGCGCGCGAACGAATCCCCGACACCGCCGCCAAGCACTGCAACCTGCCCTTCGCGCAACTGCGCAGCCACGGCAGCGGCCAGGTCTTTCGCCTGTTCATCCGCCACGGCCCCTTGCTCGACACCCCGCAACCCGGCCGCTTCGGCAGCTATGGCTTGAGCAGCACGGCAACCGTCCCCTGGTTCTGACCCTCTTTTTTCCCGACCGAAATGCCCCACGTAAAATCAAGGACTTACGTGGGGCCTCAAAAAAAGCCTGAAAACCTGGTTTTGGGGTAGTTTTTCTTTTGGAACAAATGGTTAGGGAGTTTATGGTCTA # Right flank : TACCCTATAAAAAGCCCCCAATCCCCAACCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACCCCACCTCGCTCCCGGCTTAGATAGCTCCCACGTTCCAGCTAGCCAGAGCCTTTAGTCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTGCATCCCATCCGCCTGAGCCATGGCTGCAATGCCGAGGTGTGGGACGAGGATGGCAGGCGTTATATCGATTTTGTCGGGGGGATTGGCGTGCTCAACCTGGGGCATTGCCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTATGCGTTCAACGCGGCGCCCCATGGGCCTTACGTGGAATTCATGGAGCGGCTGGCGCGATTCGTGCCGCTGGGCTATCCGGTCAGCGGCATGCTCACCAACAGCGGCGCGGAGGCGGCGGAGAATGCCTTGAAGATCGTCCGCGGCGCCACCGGGCGCACGGCGGTGATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5689216-5688466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011110.1 Pseudomonas chlororaphis strain PCL1606 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5689215 28 100.0 32 ............................ AATGAAGGCCGCGTCCGCTTGAGGACCATTCG 5689155 28 100.0 32 ............................ GCGAGCAATTGCGTCATTTGCAGCCTGGTTTG 5689095 28 100.0 32 ............................ AGCAGGAGATCGGTGCCGGCCTGTCGAATGAC 5689035 28 100.0 32 ............................ GCCGACCTGGTCGCGATGAACAAGGCCCGCCA 5688975 28 100.0 32 ............................ ATATCGGCCTGGTCGACGTCGACGACGTAAGG 5688915 28 100.0 32 ............................ CTCGCCGCCGTAGTCGTTGAGCAGGGCCGGGC 5688855 28 100.0 32 ............................ TTTGCCGTGGAGCCGACTCACGCCCAGGAGCT 5688795 28 100.0 32 ............................ ATCGAAACAGAGTTGAACAGAACCATCCGTAG 5688735 28 100.0 32 ............................ ACGGGCTAAGTAATAGCCCTTGCCACCGGGTT 5688675 28 100.0 32 ............................ AGCAGGCCGTCCGCGCCCTGCAGGGCCGTAGC 5688615 28 100.0 32 ............................ TTGAGGATCAGTTGCACCAGGCGGGCCTCGGT 5688555 28 100.0 32 ............................ GAGAACATGCGGGCCAACTTCAAGCGCCACGG 5688495 28 96.4 0 ........................A... | T,G [5688469,5688473] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GATGAAGCCAACCGCGCAGTGCTTGAGGCGCTAAAAGCGACAGCCAGAATGGCCATCGGCAACTCTCCTTTTACCGTCCGCCCTGGCATCAGCGCCGAAGAAGCGTTGCTACACGTTTCCATCCTGCTCAAGGCCGCCGAAGAGGTCTCCGACGAAATCACCGAGCGCGCCAGCGGCGTGGAGCGAGGGTTGATCTGGTCGATGATCCACTCCGTGGAAATGGCGCGGGGCGTGGTGGATGCCTTGCTCGACGGCAATCGCCCCTGATCGACAAGCGCCGCCGAAACCCTCGCGCCTCGTTGCTCGCCGGGCCAGACAAAACAGCCCAACCGCTATAGTCTGAGCGCCGGCGAGCCGCTCCTTAACGCTGACCCTTTTTTCGAGCAGGCCGCGACGCCATGTAGAATCAAGCACTTACAGAGGTTGCGCAAAAGAGGGTGAAATACGCTAATCAGCAGGATTTCTTTTTGAAATCATGAGGATGTAAATATCTCTGGCTA # Right flank : CGCATTGAAGGTATGGCCCAACTCGTTTTAACGACTGGCGTTAATGGTCGGTAGAGTGGGAACTCGCCTCGATCCCGGTCGGGGCGTTTTTTTGTCTGTAGACCCGTAAGAGGCGAGCTACCAAAACAGCCACGTCATCACAGTTCAGAATCGTCTTACAGCCTTGCCTTTCGCCACTTGCTAGGTTCGGGGAGTTGCAAAGAATCAGAGCCTCCCTCACGGATCAGTTAACGCAAGGATGATAAATGCTCCCCTCTGCTCGCCTGGGCGACAAACACGTCTGCCCACTTCCCGGTCATGGCACCACCTCGATTACCTCCGCTTCCGGTGACATAAACATCAGCTTCATGGGTGCCGCCCGAGTCGGTGACATCTGCGGTTGTGGTGCGGTTATTACCACGGGGTTTCCCTCGATCATCTTGAACGGGCGCCCAATGGTTCATCTGGGCAGCCCTACCAGTCACGGCGGAACGATCATCTCGGGCAGCCCCGATACCTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //