Array 1 36681-38146 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801427.1 Pseudomonas aeruginosa strain HMSC075A08 Scaffold356, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36681 28 100.0 32 ............................ AGGTGCGGATCCGCGATCGACAAAATGGTACC 36741 28 100.0 32 ............................ CGCCGAAGGTCCAATTTGTCGAAGGCGAATAG 36801 28 100.0 32 ............................ TTGCACGGTCCAGCCGCCATCGATGGCGTCTT 36861 28 100.0 32 ............................ AGATATCAGCCAGTCGACAGACGACCCGTAGG 36921 28 100.0 32 ............................ ATAAGGCTGGTGTTCGTTGACTTCTTCGATGC 36981 28 100.0 32 ............................ AGTAGCTACGGAACTCGAGGAGATCTTCGTCG 37041 28 100.0 32 ............................ TGAAAAATAGCCATTAAACGACCATGGACGCG 37101 28 100.0 32 ............................ GGCAAGGAGGGGGTGTGATGAGCCTGGACATT 37161 28 100.0 32 ............................ TTTCGAGCCGGAGTACGTTGACCAGTTCTTGG 37221 28 100.0 32 ............................ TTGAAGAGTTCGCACCACACCTCTCCGCCCAG 37281 28 100.0 32 ............................ TGATTGACAGGCACCGTGCCCAGGCAGCACGC 37341 28 100.0 32 ............................ AAAAGCATCGCGCACGTCTTCGCCAGATCGGT 37401 28 100.0 32 ............................ TCTGGTGGGCGAGTGCGGCGGGGCTGAAAAGT 37461 28 100.0 32 ............................ AAGAGCAATGTCTCCGACGGCCAGGGTTGCAC 37521 28 100.0 32 ............................ ATATCGGGGACAGAGCGAGCGCAACCCAATTC 37581 28 100.0 32 ............................ AACCTACGCGCAGCAGCTTTGCCGAATGAAAC 37641 28 100.0 32 ............................ GCCGAGGCCCAGGCGCTAAGGGAGGAAGTCGA 37701 28 100.0 32 ............................ TCAATGTCGGCGCCGTCCCAGGCCTTGCCCAT 37761 28 100.0 32 ............................ AATCACCGGTTCCGCGATCAACGAACGCGCCA 37821 28 100.0 32 ............................ TCGGGGCTATGCCCATGTCTCTGTCGTGATGT 37881 28 100.0 32 ............................ AGCTCGCCTCGTCCATTCGCGTGCGGGCCAGC 37941 28 100.0 32 ............................ ATCTTCGCCAACCTGTGCGACCTGGCACCGGA 38001 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38060 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38119 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGAAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48139-46670 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801427.1 Pseudomonas aeruginosa strain HMSC075A08 Scaffold356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48138 28 100.0 32 ............................ TAGTCGGAACGTTAGAAATCTTGGCGTTGGAA 48078 28 100.0 32 ............................ ATGACCATCACCATCGACCTGACCAAGGCCGC 48018 28 100.0 32 ............................ AAAAATCAAATGCCATAAATCGAGGTCTTCCA 47958 28 100.0 32 ............................ GAGACGCCCTGGCCCAGGATTATCCGCAAAGC 47898 28 100.0 32 ............................ ATATGGGGCGCCCCGCTGCGGGTGTTATTACC 47838 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 47778 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 47718 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 47658 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 47598 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 47538 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 47477 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 47417 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 47357 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 47297 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 47237 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 47177 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 47117 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 47057 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 46997 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 46937 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 46877 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 46817 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 46757 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 46697 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112660-111672 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801455.1 Pseudomonas aeruginosa strain HMSC075A08 Scaffold604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 112659 28 100.0 32 ............................ AACTCAACGCCCTGCAGGATCCCGGCCGGCGC 112599 28 100.0 32 ............................ AAAAGAACCAGCCATTCCCTTCTTTCTTCATC 112539 28 100.0 32 ............................ ACCACCAGGCCGCCGAGATCGCCGCCCACTCC 112479 28 100.0 32 ............................ TGGCCGAGGAGATGGCGTTGCATGGCGTCGAT 112419 28 100.0 32 ............................ AGGAGGTAACGCGGGAGGGACTACCGATGCCC 112359 28 100.0 32 ............................ ATGAGGCCCATTCCTTCAAAGCGATACTCCGG 112299 28 100.0 32 ............................ AGCCTCGCACGCCTGGGAGCAATACTTACCCG 112239 28 100.0 32 ............................ ATAGAGTTCATCGCTAGATCAAAATTCTCGGC 112179 28 100.0 32 ............................ CGGCTACGCGACCGGCACCAACAGCGCCGCGC 112119 28 100.0 32 ............................ AGCGCCTGGCCGAACTGGATCACCCCGTTCTC 112059 28 100.0 32 ............................ GACGTGTGCAGGATCTCGCCGGCGCCGGCAAT 111999 28 100.0 32 ............................ TTTTGGACAGGCCGAGGGGCCGTATCGACGGT 111939 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 111879 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 111819 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 111759 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 111699 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //