Array 1 2574-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRU01000022.1 Bifidobacterium longum subsp. longum strain MCC10073 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2573 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 2509 36 100.0 28 .................................... GGTGTTTCGCCGGCTATGTACAGGCTGT 2445 36 100.0 28 .................................... ATCCAGATCATGGGCGAGGCGTGCCTGT 2381 36 100.0 28 .................................... GCCTTCTCTCGCTTGTGCGGCCAGAAGC 2317 36 100.0 29 .................................... AATGAGATCGTGAAGTTCAGCAACCAGTT 2252 36 100.0 28 .................................... TCTACCGACGTGATGGGCAACTACACGA 2188 36 100.0 28 .................................... GGCCACAACGAACCCCGCGTAACACCAA 2124 36 100.0 28 .................................... GGTTCGGGCGTTCGTTCGATGGCATCGA 2060 36 100.0 28 .................................... AGCACGCGGGCATTACCGGTAACCCCAA 1996 36 100.0 28 .................................... TGGCGCCGTCCTCCCATTGGCCGGTCTG 1932 36 100.0 28 .................................... GCCCGGAGGGATCATACAGCCCGGTGAC 1868 36 100.0 28 .................................... TGTTCTTGCGCGGCCTTCCCCGCCGACA 1804 36 100.0 28 .................................... TCGTTGGCGTTGAAGCCCACGTCCGTTC 1740 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 1676 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 1612 36 100.0 28 .................................... CCTTGATGTCAACGGTGATGTTCTTCGC 1548 36 100.0 28 .................................... ACGCGGAAACTGTAGAAGTGCCCGCGAA 1484 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 1420 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 1356 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 1292 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 1228 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 1164 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 1100 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 1036 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 972 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 907 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 843 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 779 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 715 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 651 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 586 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 522 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 458 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 393 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 329 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 265 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 201 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 137 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 73 36 88.9 0 ..............................TTG.A. | ========== ====== ====== ====== ==================================== ============================= ================== 40 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCGATGTCTATTTAGAAGTGCAACACCCTTGTTGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //