Array 1 220875-221926 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCKS01000002.1 Moraxella catarrhalis strain 1020848M NODE_2_length_253793_cov_22.434859, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
    220875	    28	 100.0	    32	............................	ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA  	
    220935	    28	 100.0	    32	............................	ACCGACCCGCTGTTGATATTACTTTTTCAGCA  	
    220995	    28	 100.0	    32	............................	ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA  	
    221055	    28	 100.0	    32	............................	ACCGACCCGCTGTTGATATTACTTTTTCAGCA  	
    221115	    28	 100.0	    32	............................	GCATTGAGCATTGATTTTTTCACGCACTTTAG  	A [221122]
    221176	    28	 100.0	    32	............................	TAATTATGGAGACTTTTTTATGATTTATGTCA  	
    221236	    28	 100.0	    32	............................	TCTTCACTGGTGCGAATAAACATCCAGCTATC  	
    221296	    28	 100.0	    32	............................	AGTGATAGGGTATTTTCCTGCCACTTTCAAAT  	
    221356	    28	 100.0	    32	............................	CAGTGTACCACCACCAGTTAGACCATTACCTG  	
    221416	    28	 100.0	    34	............................	GCACAAGAGATTATTTTGGTTCCGCCAAGCTCTG	
    221478	    28	 100.0	    32	............................	AATAGATTTTTTAAAAGTTTATTGGTTGTTTT  	
    221538	    28	 100.0	    32	............................	ACCCAACCCATAGCGTTCGGCAGTGCATAGGT  	
    221598	    28	 100.0	    32	............................	TCTTGACCACAGTTTACGCACGCCGATTGGCA  	
    221658	    28	 100.0	    32	............................	AATTCACGGATTGATGAGGTATGAGACCCCAC  	
    221718	    28	 100.0	     8	............................	TACTAACT                          	Deletion [221754]
    221754	    25	  89.3	     0	.........................---	-                                 	Deletion [221776]
    221779	    28	 100.0	    32	............................	TTTTATCATAATTACTTGTTATTTCTTATTAT  	
    221839	    28	 100.0	    32	............................	CACTCAATGTATAACACCGTCCGCACCAGTGA  	
    221899	    28	 100.0	     0	............................	|                                 	
==========	======	======	======	============================	==================================	==================
        19	    28	  99.4	    29	CTTCACGACCGCACAGGTCGCTTAGAAA	                                  	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACTGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 5.95
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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