Array 1 374160-375646 **** Predicted by CRISPRDetect 2.4 *** >NC_017512.1 Neisseria meningitidis WUE 2594, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 374160 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 374226 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 374292 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 374358 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 374424 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 374490 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 374556 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 374622 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 374688 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 374754 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 374820 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 374886 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 374952 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 375018 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 375084 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 375150 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 375215 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 375281 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 375347 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 375413 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 375479 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 375545 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 375611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //