Array 1 45089-43403 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAGZ01000007.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45088 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 45022 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 44956 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 44890 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 44824 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 44758 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 44692 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 44626 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 44560 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 44494 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 44428 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 44362 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 44296 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 44230 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 44164 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 44098 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 44032 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 43966 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 43900 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 43834 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 43768 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 43702 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 43636 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 43570 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 43504 36 100.0 30 .................................... CCTGTTGTGGGATGACAACAAAGGATTTGA 43438 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGCGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //