Array 1 171358-171978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROL010000001.1 Listeria booriae strain FSL L7-1833 NODE_1_length_1325090_cov_18.753654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 171358 30 100.0 36 .............................. AAACGTTCGACGCAACGATCGATGGCGTGGGCTGAC 171424 30 100.0 35 .............................. CATCTACAGAATAATTATAAAGGATATGGCACGGA 171489 30 100.0 35 .............................. TTAATTTTGTAGGCGATAGCACATTAGCCATTTCA 171554 30 100.0 34 .............................. TCGAAACCCAACGTGTTTTTTTGTAGATAGTAAC 171618 30 100.0 36 .............................. TACCGACGAGCCGTTAACAAGTAAAGAACAAGAACT 171684 30 100.0 36 .............................. ATAGACCAGTAAAACCCTTTACTCGACTTTTCGGCG 171750 30 100.0 36 .............................. GTTAGTAACGCAGTTGACTCGCCTTTCCTGTAAATG 171816 30 100.0 36 .............................. TCTTGATACTCGAAAACGTACTCCGCGTCACGAGAA 171882 30 100.0 37 .............................. CCTGATATGACTCAGTTGAGCATAGAGGAGTTGAGGA 171949 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCAGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGCCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGGCTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGACGTTGATGAGGTACCT # Right flank : TATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 289870-288603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROL010000003.1 Listeria booriae strain FSL L7-1833 NODE_3_length_389359_cov_21.226833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 289869 30 100.0 36 .............................. AAATCCTAGTTCCGTCATGCAGTCTTGTAATAGCTT 289803 30 100.0 36 .............................. TCGTCATTCTGCCAAGAATCTGTTACATAGCCTACT 289737 30 100.0 36 .............................. TTTGTATTTCTGCTTACTTCAAGCACTTTAAAAATT 289671 30 100.0 36 .............................. TCCTGACCTCGTGACCCTTCATCCTCGACCCACCCT 289605 30 100.0 34 .............................. ATTTTTACAAATGCTTTAACCATTCTTCATCACT 289541 30 100.0 35 .............................. AACTGAAAAAGATTTTGTGAAAGTGGCTGCTATTC 289476 30 100.0 35 .............................. TGGATTGCGCTGTCTCCGCTTCGATAAAATTAGTA 289411 30 100.0 36 .............................. AGTTGACAGACTTTTCATATAACAAATTATAATTCC 289345 30 100.0 36 .............................. GCGAATGCTACGATTGCAACCACTAATGGGACAAAA 289279 30 100.0 36 .............................. ACCACTTACTCAAATCATTTGAAAAAGGGGATTCTT 289213 30 100.0 35 .............................. ACAGTGTCCTACTTACATGTTATTATGATAGTGTG 289148 30 100.0 36 .............................. AGAGGAAACAATGAAAAAAGCTTCTGATGATTTATC 289082 30 100.0 36 .............................. GAGGATACAAAGGCAACACAGGATAGCGCATTGATT 289016 30 100.0 36 .............................. CAAGAAATTTTAATTATGGATACAAAAGACATCAAT 288950 30 100.0 37 .............................. TTTCTCACAACTTTTTGATTAGCCGCAACAGTTGTCG 288883 30 100.0 34 .............................. TTCACTTCGGCGGCATTGAAGCCATGTTGATTCA 288819 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATTAGGGAATA 288753 28 86.7 35 ..............T...--..G....... CCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC 288690 30 83.3 28 .........C...C...A..G...A..... TAGGAAAAGGGCGCACTTATACACCCTG Deletion [288633] 288632 30 70.0 0 C.....TC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 97.0 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCAAAAGTAACGAGAAACATTTTCAAAATCTGCAGAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGCGTGATTGGATTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGATAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGACTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCCAGCCCTCACAAAAAATCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAAGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATCTTCTTGATGTGTCGTATTAAGGTTCTGCATGAAAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 68230-68851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROL010000007.1 Listeria booriae strain FSL L7-1833 NODE_7_length_116821_cov_17.575815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68230 30 100.0 35 .............................. AGGTTCCGCATATGCAAAAGCTCTTGCCAATTCTG 68295 30 100.0 36 .............................. TGATCAGCAATCGCTTTGAGTTCTTCTGCTTTATCG 68361 30 100.0 36 .............................. GAAGTATCAATCCAACAAAGGATTGGCCACGGTAAG 68427 30 100.0 36 .............................. AGAAATTGATATTATCTATGAGAGTATTCATGTATT 68493 30 100.0 35 .............................. ACTGAAATTGCATAAGATTTAGCGAAATCCTTAGC 68558 30 100.0 37 .............................. TCTAATACCCGTAGCACGTGCGCATCTATTTTTTCAA 68625 30 100.0 35 .............................. GTGTAGTTGCGATTGCTAAGAGCGTTGGATTTAAA 68690 30 96.7 36 .............C................ CTCGTCACTTTGAATGTGAAAACAGGAAAACTGTTC 68756 30 93.3 36 ....G...............A......... AAAGACAAGGGCCAAACGGTTCGATTCACTAAACCA 68822 30 76.7 0 A................C.A...CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 96.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTGTTTTTTGCTTAGGGAGAGAAGGGATTAAGATGGTTTTCGAGAGGTTGAAATAAATAATCAGATGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGGACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCGTAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATACGCTCACTTTCTCACAAAATACCTAAATAAAAGATGAATAACTATTAAAAACAGTACACTAACCATGAAAAGACCACTCGATATCCATCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACCA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 72098-72648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROL010000007.1 Listeria booriae strain FSL L7-1833 NODE_7_length_116821_cov_17.575815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 72098 30 100.0 35 .............................. TGGTGGCGGCTCATTCAGTGTAAGCCAAGAAAACA 72163 30 100.0 36 .............................. TCTAATTCCAAGGCTCGTTTAATTCGTTCATCTGTT 72229 30 100.0 36 .............................. ATTATACGTAGACATTACAGCGAAGGATGTTACGAA 72295 30 100.0 35 .............................. TCTGCTGTAAATCGACCTAAACGCTCTACCGTTTC 72360 30 100.0 36 .............................. AGATATGTCCTGTCAGCTCTGTATGCATTCAGTGAT 72426 30 96.7 35 ....C......................... CAAAATCTCCCTCAAAAGTGCGATAAGTTATGATT A [72436] 72492 30 96.7 35 .................A............ CCGAACAAAGTTGCTGGGGCAACACTAGTAGGGAA 72557 30 96.7 33 ................C............. GTCACTGTATCCCCTGATTTTTTTACGCGTCCA 72620 29 76.7 0 ................-.A.G...CC..CA | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 96.3 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGATGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAATAGATTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGAAATTTAGCATTTTGCTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGTTACCT # Right flank : AAATAAGACATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTATTCTATTGACCTCTATGTTGAAAATTTTTAGCATGCAGTTAACAACGATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGTGCGCTATCTGTCGTATTAAGGATGACCGTTTTCGCGTAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTATGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCGACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTTGCATAATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //