Array 1 15247-17350 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWZ01000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT471TT NODE_22_length_82615_cov_14.8245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15247 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 15308 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 15369 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 15430 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 15491 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 15552 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 15613 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 15674 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 15735 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 15796 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 15857 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 15918 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 15979 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 16040 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 16101 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 16162 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 16223 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 16284 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 16345 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 16406 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 16467 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 16528 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 16589 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 16650 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 16711 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 16772 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 16833 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 16894 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 16955 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 17016 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 17077 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 17138 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 17199 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 17260 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 17321 29 96.6 0 ............T................ | A [17348] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2769-1521 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWZ01000067.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT471TT NODE_67_length_8081_cov_14.8874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2768 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 2707 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 2646 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 2585 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 2524 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 2463 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 2402 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 2341 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 2280 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 2219 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 2158 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 2097 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 2036 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 1975 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 1914 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 1853 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 1792 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 1731 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 1670 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1609 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1548 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //