Array 1 10133-11251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXN010000019.1 Phocaeicola vulgatus strain MSK.9.20 NODE_19_length_83630_cov_177.092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10133 47 97.9 29 ...A........................................... AGACTTGAATGCAGCAGGTGCCGATACTG 10209 47 100.0 30 ............................................... TGTGTGGCAAACGGAGAATGCTATCATCCA 10286 47 100.0 29 ............................................... GGAATTGATATGACAAGAAGATTTTTCTT 10362 47 100.0 30 ............................................... TAGCGGTGAATAGCTTTTTCGAGCTCAAGT 10439 47 100.0 29 ............................................... AAAAGAAAAAGTAAACAAAGTGAGTGCTA 10515 47 100.0 29 ............................................... AAAAGAAAAAGTAAACAAAGTGAGTGCTA 10591 47 100.0 29 ............................................... GATATAATTTTGAACATCAACATAATTTA 10667 47 100.0 30 ............................................... ACCAAGGTGGTGTTCAAGATCAAGAAGAGT 10744 47 100.0 29 ............................................... AGATAATAAACTTTAATCGTGAGCTGCTG 10820 47 100.0 30 ............................................... ATTCAGATCAGATGGCTGCTCAGTTTGGCA 10897 47 100.0 30 ............................................... AATCTGCGCAACTATATTCGGATACCGGAA 10974 47 100.0 30 ............................................... GATTCAACATCGACATCACTAGAACAGTTA 11051 47 100.0 30 ............................................... AAAATCCAATAGAAGCTCGTGATCGGGGCT 11128 47 100.0 30 ............................................... GGAGTGTGAGTTGTGCGTTTATGGACGAGA 11205 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 1816-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXN010000026.1 Phocaeicola vulgatus strain MSK.9.20 NODE_26_length_70302_cov_183.664, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1815 33 97.0 34 ................................A GTATTAGTTGACAAATGGCATATAGTCTACCGTG 1748 33 100.0 31 ................................. TTCCATGGGTAGTGTTTGGCTTGCATCTCTG 1684 33 100.0 33 ................................. CTTTTGTCTTGTCAAAAGGGAATACCAGACTAT 1618 33 100.0 33 ................................. GTTTTTAATTGTTAATACTGTTCATTTCTTTTG 1552 33 97.0 33 ................................A TGACTGTACGTATAGCCTTCTCCAGATTTCCTC 1486 33 100.0 32 ................................. TCCTCCTTTTTCTCATTTGGCGTTGAGGCTAT 1421 33 97.0 32 ................................A ATGCCATCCCCGAATATTCTAATCTCTGACAT 1356 33 100.0 33 ................................. TGGATGAACTACCAACGTGGCGGGGAGACCCAG 1290 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 1224 33 97.0 34 ................................A GTGATAGTAATATAGATAGTTTAGCGGTTGATAT 1157 33 97.0 33 ................................C CGAAGGCACTCCTTACATTGACGCTTATCCTGA 1091 33 100.0 32 ................................. GGTAATGATCGTCAACTCTGTGGGAGGATAGT 1026 33 100.0 33 ................................. TCGCCTACTTGCAAGGTTACCGCCGTGAAGGAA 960 33 97.0 32 ................................C AGAAGAATACCGGATATCTTGACAATCGTGAA 895 33 97.0 33 ................................A ATCCCGTTGGGAGACATCCTCTCCCATTACGGT 829 33 97.0 33 .............................G... CGAAATAGCGTAGCGATCCTTGCTCATCACAAG 763 33 93.9 33 ........T.......................A CGCAATCCACCACTATCATAGCTCGGATGAACT 697 33 90.9 0 ....................A.........G.A | TA [674] ========== ====== ====== ====== ================================= ================================== ================== 18 33 97.8 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGACCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGTAAATATATTATATTTTTACTATACTTTCCCTTGTTGCTTATTTGTTATGTTGTTGATTATTAATGTGCTGTTATCTGTTTGTATCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //