Array 1 21685-19707 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONS01000036.1 Longispora fulva strain NBRC 105670 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21684 29 100.0 32 ............................. GCGGTGTGCTCGCCGATCTCCAGGGGCAGGAG 21623 29 100.0 32 ............................. GGCACCCTGGACGCCGCCTCCGCGTCGAGGGT 21562 29 100.0 32 ............................. CGGTCGAGGTGGGCCGAGTGGGGCGGCGTAGC 21501 29 96.6 32 ............................G CCATGGCCGGCCACTTCACCCGCCCCGGGGAG 21440 29 100.0 32 ............................. GAAGATCCGGCCGACCAGGTCGGCGTCGTGGA 21379 29 100.0 32 ............................. GCCGCCGACCCGGTGAACAGCTCGCCGAGAGA 21318 29 100.0 32 ............................. GTCGACCTGGGCGAGTGCCCGAGCCCTGCGGC 21257 29 100.0 32 ............................. TCGGCTCTGGCGGGACCGAGCAGTGACCGCCC 21196 29 100.0 32 ............................. ACCTCGGTCAGGACCCGGGTGCGGACCTCGCC 21135 29 100.0 32 ............................. CGGTCGCCGTCCTGGACGACGACACCGCCGCC 21074 29 100.0 32 ............................. TCCCCGGACCGGGTGGCACCCTGCATCATCCC 21013 29 100.0 32 ............................. GCCTGCCATTCGTCCATGCCGCCGTGCTCGGT 20952 29 96.6 32 ............................T CCCTTCACGAAGATCCAAACTCCGCGCGCCGT 20891 29 100.0 32 ............................. GCCTACGACCCGTCCGAGGACTCCGTCGCCCA 20830 29 100.0 32 ............................. TCTCGGTCAGCCAGGTCGGGGTCGTTCACGCA 20769 29 100.0 32 ............................. GGCAGAAGGCCCAACGTGACGCAGCGTGTACC 20708 29 100.0 32 ............................. ACCGGACCCGTCCAGGGGATGCGGCACTACCT 20647 29 93.1 31 .................A..........G GTCTCCTTGACGGGGCTGACGCGGTCGTGGC 20587 29 100.0 32 ............................. CGGCTGCGGTCCAGGTGGTACCGCAGCACCGC 20526 29 96.6 32 ............................G ACGCGTTCGGGGTGCTCGCCGACGCCCAGGTG 20465 27 93.1 32 ........--................... TCGATGTCCGGGGAGCGTGCCTCAACCTCGAC 20406 29 100.0 32 ............................. CAGTTCCCGGCATAGCCACGCCGAGAATCGAT 20345 29 100.0 32 ............................. ACCGTGCGCAGGAACCCGTAGGCGAACAGGAA 20284 29 96.6 32 ............................T CGGTCACTTCCAGGCCGAACACCTCGTGAGTA 20223 29 96.6 32 ...................A......... ACCCGAGCAGTTCGCCAGCCTCATGGGTGATC 20162 29 96.6 32 ............................T TGCGCGCCGAAATACGGAGTGATGCTCCGGAC 20101 29 100.0 32 ............................. ACCACGTGCGCCCCAAGGACTGGAAAACCTGG 20040 29 96.6 32 ............................T GTGCGGTGGCCGAGCCATACGCAGCCCGCTGC 19979 29 93.1 32 .........T.A................. ACCGTGCGCCCGGAGCTGGCCATGCCGGTGGA 19918 29 100.0 32 ............................. CTCTGGCTGATCGACGCCGGGGGTCTCTGGTG 19857 29 96.6 32 ...T......................... TTGTGCCCGCTGATGCTGATCGAGTCGGTCAG 19796 29 100.0 32 ............................. CAGGACTCGTAGTCGTAGCCGATCCAGATCCC 19735 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.4 32 GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Left flank : CCCACGTCAGACCCGACCCCCACACCGCGGCGGTACCCAACGGATCAACCTGCTGAAACGCGGGCGTGGCCTTCCCGCAGTCATGCACACCACACAGCCACGCAAAGAACCGCCGGCCCCGACCGACACCGCCTGCGACGTCATCCAACACCCGCCGGACACGCACAGGCAGATAGCAGTCCCACACCCGCTCTGCCACCGCAGCCGTGTCCAACATGTGCGACAGCAGCAAATTCATCACCCCGCCGCCGTTCATCGCCGACTTACCCCACAGCACACCTACCCGACCACGCACCTCGACTCCGTAGAATCGCCAATAGTCAACAGCGACAACCGCAGGTGCGTCATTCATGCCCACGACGCTAGAGCAAGGCACCGACAATTCCGTCAAGAACAAGATCAATCCGAGATGGATCATGTAATGCCGCCAGCGACCCCAGACCGCAATGCAACTGAATGAAATGGGGCCTCCCGCACCGTAAAGCCCCAGGTCACCAAGC # Right flank : GGACCGAAGGGTGACCCACCCAAGCTGTCGCCGTCCGGGGACTGATCGCCGTTTGAGCTGGGGCGTAGCCTGCCAGTCATGAACGAGCGCACTCCGGGCGCGTGTTTCGGCCGTGCTGAACTCGGCACCTTCCCCCCTCGGGCCCGACGGCGGTGCTCTCACTGTGCTCGGGTCCGGCCTGGTGCTCATCGGCCCAGTCGTCGTGCCAGTTTTGCTGGGCGTTGACCCAGGGGCGTTCCCTGCCTGGGCGCGGTGGGGCACCTGCGCCGCACCGCCGGCGACCCCACCGACTGAAGCGAACTTGGCCAGCGTCGAGTGGTCCACGCCTACGATCAGGCCATGGCGTGGAACTACCTGCAGGTCATCCTGAGCTCCCCCGTCGGCCAACCCCAGCCCCCTGTCGACCAGCCGAGCAGCACGCCGAGAGCCCTGATGTCCAGGTCGCGACAGGTAACGGCACCGACCCCCTCGGGGCGCAGCACCCGAGCTAGCCGCTTGTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33816-31472 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONS01000036.1 Longispora fulva strain NBRC 105670 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33815 29 100.0 32 ............................. ACCGCGGTGATGACGGCCGAGTGCACCTGGCC 33754 29 96.6 32 ....................A........ GGCCCGCCGGTGACGGTGATGTCGCCGGCGTT 33693 29 96.6 32 ............................T GACCGGGTACACGGCGTCGTCGGGGGTGTGCG 33632 29 96.6 32 ............................T TCCTGCTCATCGTCGCAGCCCTCTACCGACGG 33571 29 100.0 32 ............................. CCCAGCAGGCCGGCCGTCTTGCACTCGACCAG 33510 29 100.0 32 ............................. GGGTGTATCGACATGACCGGAGCGCGCCGAGC 33449 29 100.0 32 ............................. GGTCAGGGCAAGAAGCCTTCGGGGCTTCGTGC 33388 29 100.0 32 ............................. CCGATGTATATCCAGACCGACGCGACCCACCT 33327 29 100.0 32 ............................. CGGGCCTCGCGGGCCTCGTCGGTCTTGAGCGC 33266 29 96.6 32 ............................T CACCGGCGGACCGCGTACTACCTCCGTTGTGC 33205 29 100.0 32 ............................. CCGTCGCCCATGTCCTTCGACGCCGGCAGGAA 33144 28 96.6 32 ....................-........ GACTTCCTCGCGTACGTAAAGGAGAACGGCCC 33084 29 100.0 32 ............................. GCCTGCTTCGCCGGCGGATCGGGACGCCTCGG 33023 29 100.0 32 ............................. GGATCGGAGAGGTGCAGCTCGACCCGGCCGAC 32962 29 100.0 32 ............................. GTGGGCGGGTTCGTCGCCCTGGTCGGCGCGTC 32901 29 100.0 32 ............................. CTGGCTGGCCTGGTTGTTGACGGCGTCGTCTA 32840 29 100.0 32 ............................. TACCGGTCTGACGGCACCACCCGCACCCCCGG 32779 29 100.0 32 ............................. CGGCAGTGGTCCAGTCGGCGTGGATGACGTCG 32718 29 100.0 32 ............................. TTCACCGGGCAGTCGGCGCAGACTTCCTCGCC 32657 29 100.0 32 ............................. CCGACGGTCGCGGCCGGCGCGACAAAGGGGTT 32596 29 100.0 32 ............................. ACGCTCGGCGTGGGGTCGACGTCGGTCGGGGC 32535 29 100.0 32 ............................. ACCGCCGGCAGCACCCCGGATGCGGTGGTTCA 32474 29 100.0 32 ............................. ACCCCATACCCTGGTTCCGGCCCCGCCCGGGT 32413 29 100.0 32 ............................. AGCAGGGCCCCGCTCCCCCACCCCCCGAGGTT 32352 29 100.0 32 ............................. CACGCGTCGTCGTCCTTGTCGAGCCACCGCCC 32291 29 100.0 32 ............................. CCCATGATGACCCACGACCCCGTCGCCGTGTT 32230 29 96.6 31 ............................T GCGGACATGGCCACCGCCGTGATGGCCTACC 32170 29 100.0 32 ............................. ACCCCATACCCTGGTTCCGGCCCCGCCCGGGT 32109 29 100.0 32 ............................. GAGTACCGCCAGTGGTCGCTGCCGTTCGACGT 32048 29 96.6 32 .....................C....... GGTTTTGGGGACTGTCCACAAGCGAAACCCTT 31987 29 93.1 32 .......................A....T CTGTGACGTAGGCCGACTGGCCGTAGGCGTTG 31926 29 100.0 31 ............................. GGTCGTCGCCGTCATCGTCGCCTCCCGGAGG 31866 29 96.6 32 .....................G....... GCGGTCCGGGTCGACGAGGCGCAGGGCCCGAG 31805 29 93.1 32 ......T............A......... GGGGCGATGGAGTACATGCCGGAGGAAGCGCG 31744 29 100.0 32 ............................. GAGATACCGGCTTTCACCTGCGGTCTAGGCTT 31683 29 100.0 32 ............................. TACACCCGGACGACATTCGCCACGTTCACCGG 31622 29 100.0 32 ............................. GCGCAGATGCCCCTCGAGGACACGGTGGGCGT 31561 29 100.0 32 ............................. GGTGGCTTCATCGCCGGCTCGAGCGTCTTCAT 31500 29 93.1 0 ..............T.............A | ========== ====== ====== ====== ============================= ================================ ================== 39 29 98.8 32 GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Left flank : TTGACCTGTGGAAACGCAGCTCTTCACGTCGTATTCAAGCGCTGTTTTCGGCCCGCGTTGCTCCGTTGTTGCTCCCGCGCTTGACCCACTCCGCATTAGACAACATGAGCCGCCACCCATCGGGAGTCCGCGTCCACCGCAGAGCGCACGTCACGCAAGCTCAATCCCATACACCGAACAACTCGGGCAAATCGCCGATCGGGGTCGTGCAACACGTAACGCGGCCAGCGACCCCGAACTAATCGCCGTCTCTGGCTGGAGAACGCCAAGTCCATACTGCGGCCCGTAGAATCGCCAAGAGTTAGATGGCCGCACGTAGCTCCCCAAAATGTGCGCACGACGCCAGAGCAATGCGCCGACGAGTCCAAGCACAAGGAAGATCAATTCGAAGTGGGTCCAAGAAATCTTCACCCCGGCGCGCCCTTCGATCACCGACGCAGGCTGAAATGCAACTGAATGAACTGGCCCCTCCGGGGCCGTAGAGGCCCAGGTCACCAAGT # Right flank : TACGTCGAGATTTGTGCCTTCGGCGGTTCCGTCGGGGTGGCATCCGCGTGCGACCTGGTGTGTTATGCCCTTTGGCGGGCGGAGAGGATGAGTCCGTCGTAGTCGGTAGGGTGCCAGCGGTCTCGTCCTGCGGTGCGGACGGTCCAGCCTTGTTCGTTGTTGGCGGGTTCGATGAGGATGGCTTGTCCGTCGTTGATCCGGGTGGCGAGGAGGTCCCAGACGCGGTCTCGGATGCGGCGGCTGGGGTTGCCGACGAAGACGCCGGCGTGGACTTCGATCATCCAGCGGGTGAGGTGCCCTCGGAGCCCTTCAGGTGCGGCGATGAGGATGATGACGGTCATCGGCGTGGGCCGGTGGGGGCCGGTCGGTCGAAGTCGGGGCCGATGACCGCGAGGTGTTCGTCGCCCATGCCGGGGTCAATGGGCCCGAGCGGATTTGCGTCGGAGTTGGTTGCCCAGTTGACTCCGCCTGCGACGGTGCCGAGGTGTTCGTCCCAGAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //