Array 1 188-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_VODD01000480.1 Escherichia coli strain EC1488 S9_paired_Trimmed_contig_481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 249 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 310 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 371 29 96.6 32 ..............T.............. CTCAAAATCGGCGGCGGTTAAGTGGCTGACAT 432 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 493 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 554 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 615 29 96.6 0 ..........................A.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGTGTATCGCTTTTGTTGCAGCTTGTATGTCTTCAGTTTTCAGTTTGCTATTTGTACTGAGATTTTGGATCTTTACACATGTTGGGTGTTGGTTTTGTTTAATGATCCGGCGCCCACCGAGAGCTCCACGAGCCTCGTCGGCGGCAGCGTCAGAGGGGGAGAAGAGACAGAGGGTATGTGGAGAG # Right flank : TTTAGCGTAAAGTCAACAATTACTTGGCTTTTGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8686-9996 **** Predicted by CRISPRDetect 2.4 *** >NZ_VODD01000013.1 Escherichia coli strain EC1488 S9_paired_Trimmed_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8686 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 8747 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 8808 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 8869 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 8930 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 8991 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 9053 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 9114 29 100.0 32 ............................. GCGTGGGCGAAATTGCGCAAAATACCGCTGGG 9175 29 100.0 32 ............................. GGCGATACGCCGCGCGATCGCATCCTCAATAT 9236 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 9297 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 9358 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 9419 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 9480 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 9541 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 9602 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9663 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9724 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9785 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9846 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9907 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9968 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //