Array 1 979750-981242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979750 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 979811 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 979872 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 979933 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 979994 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980055 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980116 29 100.0 31 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCC 980177 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980238 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980299 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980360 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980421 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980482 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980543 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980604 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980665 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980727 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980788 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980849 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 980910 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 980971 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981032 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981093 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981154 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981215 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997374-999338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997374 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997435 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997496 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997557 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997618 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997679 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997740 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 997802 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997863 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 997924 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 997985 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998046 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998107 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998168 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998229 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998290 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998351 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998412 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998473 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998534 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998595 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998657 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 998760 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998821 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 998882 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 998943 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999004 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999065 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999126 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999187 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999248 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999309 29 96.6 0 A............................ | A [999335] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //