Array 1 155846-157069 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKDG01000010.1 Latilactobacillus curvatus strain RI-406 20150709.B-R406_R1_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 155846 36 100.0 30 .................................... ACTGTTTGATAAACCTTATGCTCCACAAGG 155912 36 100.0 30 .................................... AGATTAGCTATTGACAAATATAAATTCATA 155978 36 100.0 30 .................................... TGTTCTTTATATGCCTTATTAACAGTTTCT 156044 36 100.0 30 .................................... TGCCTGGGATTGTCGTGGCTGTCGGTCAGA 156110 36 100.0 30 .................................... ACTTCATGGTTGATAACATAATCGGTAACC 156176 36 100.0 30 .................................... AATGATATGCACCACTTGCCAATTCTATTA 156242 36 100.0 30 .................................... AACACTCTATTCTGGAATCGGTGCTTTCAA 156308 36 100.0 30 .................................... CGCCTTTAGCGTCGCTAAAGATAATTGATT 156374 36 100.0 30 .................................... CAATAAGAACGACACTGTTAATGGATGCGC 156440 36 100.0 30 .................................... AATTTTCTCCTTTCGAAAGTTTTAATTTAG 156506 36 100.0 30 .................................... AGCAAGCTCAAGTTTATGTAAGGGTGTGTG 156572 36 100.0 30 .................................... CCGCATCCGCTAAGGTATCGTTGCCCCCTT 156638 36 100.0 30 .................................... AGATCTGCAATGCTTAATACCAAATCGAAA 156704 36 100.0 30 .................................... CCAAGGGGCAGCAATTTGCATTGGCTGCTA 156770 36 100.0 30 .................................... CAACAATATGGTGGATAATATCTTATATAT 156836 36 100.0 30 .................................... TGTTGAATTGAGCAATCCATTGGCGATTAA 156902 36 100.0 30 .................................... TCGCCTATTCAAAAAAGATGAAACTAACTT 156968 36 100.0 30 .................................... GATGGGGCAGACGGGTGTTGCTGGTAAGGA 157034 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Left flank : GCAATTAATTTGAATCATCTATTTCAAAATCGGTTGATTAAAAAATTCACCGCCGACTTAACGGATCAGCAGCACCAGAAATTAACTCAGTTAGATAGTGAGATTCGTTCAACGATTTTGGATGCGGCCTTTATGTATGAATTGACCTTAGATGTCAATCAGGAATGGGATCTTCAAAGAATGATTAAGTTCTATAATTTACAATTTTCGACTGTCATCCAGCATGACCCATATGGTATAATTGAGAGTATGGTACAGACAGCAGTAGAGTTAAATGAATCAAAAATAATCACGTTGATCAACGTTTCGCACTATCTCAGTATCAACCAATTTAATGAATTGGTGAGGTTGGTGGCGACATTGAATGTGAAACTCTTTCTCATTGAATTTTCAGAAGAGGTTAAATCTGATCAGTACCAGAAATGTTGTTATTATCACATCGATAATGATTATGTCGAATGGCGCTATGAATAAAATGAAATTCTGATGAAAAAACGACG # Right flank : TTACATGTTTACCAAGAGCGACGAATTCTTGTTTTAGAAGAGTATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 47-480 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKDG01000052.1 Latilactobacillus curvatus strain RI-406 20150709.B-R406_R1_contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 47 37 100.0 29 ..................................... TACACTCTTAACCCAAGCATTGTATTCAT 113 37 100.0 29 ..................................... TTAAACATTTCAACATACAAATTAAAATA 179 37 100.0 29 ..................................... GGTTTTGACCTTTATCGAGACTTTAGATG 245 37 97.3 29 ....................................A CCCTCTTACTAGCAACTATTAATCTAATT 311 37 100.0 29 ..................................... GCAAACACGAAATCCAATCATTGAATGAT 377 37 97.3 29 ....................................A AAGTAAGCAAATAAACTGATTATCAAAGC 443 37 81.1 0 ........................A....T..TTTAC | T [470] ========== ====== ====== ====== ===================================== ============================= ================== 7 37 96.5 29 GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACT # Left flank : TGTTTTTTTTTTACATCTCTTGATTTGACCCATCCATTCTCTATTAG # Right flank : CCTATTTCCCCAGGAAAGCTATTGATAAAGATCACGTCGCTCGCGTGGTCTTTTTTCATGCATTCAAGCATTGAAAACAGTTCTCAATTAGCATAGAATTAAGAGCGTATAATAATTGCTAGAATGCGATTCTTGGAGGGTCATCTATGTCTAAATTAGAGATTATCGATTTGCACGTCGGCATCGACGGTAAGGAAATTTTAAAAGGTGTTAACCTGGAAATGAATACGGGTGAAATTCACGCGATCATGGGACCTAACGGGACTGGGAAGTCGACGCTTTCGGAAACGATTATGGGCAATCCCAAGTATGAGGTACTGCAAGGTCAGATCAAACTAGATGGCCAAAATATTTTAGAAATGCCGGTTGATGAACGCGCCCGTGCGGGGTTATTTTTGGCGATGCAATACCCTGCTGAAATTCAAGGGGTAACGAACGCTGAATTCATGCGCGCTGCGATTAATGCACGTCGGGCTGAAGATGATCAGATTTCAGTGATG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACT # Alternate repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //