Array 1 32798-31304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYA010000022.1 Pseudomonas aeruginosa strain Patient_20_PostExposure 54654_c0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32797 30 90.0 35 GT...G........................ GAGATCGAGTCGGACAAGGCCGAGCGCTGGGAAGT 32732 30 100.0 37 .............................. ACCAGTTGCCTAGCCGTCATCACGGGTTTGCTGATGT 32665 30 100.0 36 .............................. GAAATCTGGCGCGTCGAGTGGCAGCAAATCGTGCGT 32599 30 100.0 37 .............................. CAAATATTTGAGCCTGGACAGAATGTAAGTGGACAGT 32532 30 100.0 37 .............................. AGCCAGAACCTGGTGCGCTGCCGCGCCGTGAATATGT 32465 30 100.0 37 .............................. CGCATGCCGCGCTGCGAGAAAGGCATCGAAGTTGAGT 32398 30 100.0 36 .............................. CTGATGATTTGCTGGAGATGTAGCCATGGGCCAAGT 32332 30 100.0 35 .............................. GCCAGTGCCCAGCATGTCCAGCTTGGCGGCCTCGT 32267 30 100.0 36 .............................. ACCAGAAGGGCGCCGCCATCGCTCAGGCGATCCAGT 32201 30 100.0 37 .............................. ACCGGTATCGCGCCGCGCTTCAACACCGTCAGCACGT 32134 30 100.0 35 .............................. AACGTCGCTGGGGCCACTGTCCAGTACCTGCCCGT 32069 30 100.0 37 .............................. GATGAGCCCAATGTGTAGGAGGGTGAATGCCGTACGT 32002 30 100.0 38 .............................. AGCACGGTCTGGTCCATGTACCAGTCGAAGCCGAGGGT 31934 30 100.0 37 .............................. ATGGCTTTCTCCGGGCAAAAGAAAAGGCCCTATTGGT 31867 30 96.7 38 ........A..................... CATCAGATCAAGGCAGCACTGGTTGAGAAACCCCACGT 31799 30 100.0 35 .............................. TGGAAGTCCCCGACTATCCGGAAGATGCCGAAGGT 31734 30 100.0 38 .............................. GGCGCGACGGTCGTCAGGATGAGCGACGGTGCTGGCGT 31666 30 100.0 38 .............................. TTCTTGAGGGTGGAGAGGCGGGCTACTTTTGCCGGTGT 31598 30 100.0 38 .............................. ACGGGTGCGCCAGTGGAAAGGGAAATCACATGGAAGGT 31530 30 96.7 34 ...........T.................. CATTGCTCCGAGAGCACGTTCGTGCCTGGCATGT 31466 30 96.7 38 .......T...................... AGCCCTGGCCAGGTCGTAATGACCGCAGCCGGTGAGGT 31398 30 90.0 35 ...........T................CA ACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 31333 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.0 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : GCCATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTATGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCGCTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCCAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATATACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCG # Right flank : ATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63828-62840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYA010000036.1 Pseudomonas aeruginosa strain Patient_20_PostExposure 54654_c0036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63827 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 63767 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 63707 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 63647 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 63587 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 63527 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 63467 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 63407 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 63347 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 63287 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 63227 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 63167 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 63107 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 63047 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 62987 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 62927 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 62867 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37391-38199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYA010000043.1 Pseudomonas aeruginosa strain Patient_20_PostExposure 54654_c0043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37391 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 37452 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 37512 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 37572 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 37632 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 37692 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 37752 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 37812 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 37872 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 37932 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 37992 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 38052 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 38112 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38172 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47471-46723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYA010000043.1 Pseudomonas aeruginosa strain Patient_20_PostExposure 54654_c0043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47470 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 47410 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 47350 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 47290 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 47230 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 47170 28 100.0 32 ............................ TGATGCCCGACATGGGTCGGTTCGCGGGAACC 47110 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 47050 28 100.0 32 ............................ GCTGACCTGCCCTCATTGCCAGGGCACCGTGG 46990 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 46930 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 46870 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 46810 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 46750 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACCGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //