Array 1 2950-1706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSQ010000031.1 Aphanizomenon sp. FACHB-1399 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 2949 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 2875 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 2802 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 2725 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 2648 36 100.0 40 .................................... GATTTAATACTAGATGAATTAATCAACCAATCAATGATAC 2572 36 100.0 37 .................................... GTTACAGGAAGTAATGGTACTAACTTAGGGGGGTTAA 2499 36 100.0 40 .................................... AAATGGGTTTTGTTGGCGGTAAGGTTTTAGAGCCTAGTTG 2423 36 100.0 42 .................................... CAACAGATAACTATCAGTGCCTCAACAGATAACTTTTATTTT 2345 36 100.0 42 .................................... TTTCGTTGACTTATCGGACAATAATTATCCGTCGCTATAACT 2267 36 100.0 34 .................................... TATACTCCAGGTATTCATGATCTTTAAGCATCCA 2197 36 100.0 40 .................................... TTGAGTGAAAAAAGATGTTAATTTTACCGTTAACTGCTTC 2121 36 100.0 36 .................................... ATAACTAATGTTCTATCAAACGTATATTCAATTAAA 2049 36 100.0 42 .................................... TCTAACAGGAACTAAATCAAGGACGTATTTCCTACCACCCAA 1971 36 100.0 41 .................................... GTATATCCGCCGAAACTATAACGGGGTTAAGTTCTAATACC 1894 36 100.0 46 .................................... GATCTAATGTATTTCATGGTTGTCCTCTAATAGAATAAGTAATTAG 1812 36 100.0 35 .................................... CTAAGAATAGACTGAATATTGTTTTCATGTTTACA 1741 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 17 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : AAAAGCACAGATAGTATATTTCCCTGGTCTAATCAAGTACATACCAACTTGTTTCCTGTTCCCTAAAACTAAAAAACCTTATACCTCAAGAACATGAACCAAAAAACCCTTAAAAATCAACAAACCCACAATACCTAGCCACCAAACCAGCTAAAACTTGCAAATCTATCGGTTTAGAAATATACTCATTAACACCAGCAGCCAAACAAATTTCTCGATCTTCCTTCATCGCCCTTGCAGTTTGAGCAATAATCCCTATATGCTGATATTTAGGGTTTTCTCGTAATTGCTGCACCAAAATTAAACCATTAATATCAGGTAAACTCACATCCATTAAAATCACTCTTGGTTCTATTTCCCGCAGACTATTCCACATTTCCACCCCATTTTTTACCCAAATTACCTGATACCCCAATCTTCTTAAATAAATCCCCATTAATTCCCCATTTGCTAAGTCATCTTCCACTAGTAAAACTACTGGTGATAAAGTCATATTATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14716-10591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSQ010000060.1 Aphanizomenon sp. FACHB-1399 contig60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 14715 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 14641 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 14569 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 14497 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 14425 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 14353 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 14283 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 14210 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 14140 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 14066 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 13993 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 13921 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 13846 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 13769 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 13698 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 13621 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 13548 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 13478 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 13410 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 13338 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 13261 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 13193 37 100.0 39 ..................................... AAAAAAAGTAAAAAGTAAAAAAGAGGTAAGGAAAATGCA 13117 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 13046 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 12972 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 12899 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 12826 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 12753 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 12683 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 12608 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 12536 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 12464 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 12392 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 12320 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 12248 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 12177 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 12108 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 12035 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 11964 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 11893 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 11816 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 11742 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 11671 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 11598 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 11522 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 11448 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 11375 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 11297 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 11222 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 11151 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 11079 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 11004 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 10932 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 10861 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 10793 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 10723 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 10627 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : AAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1635-6472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSQ010000007.1 Aphanizomenon sp. FACHB-1399 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1635 37 94.6 41 ...................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTAA 1713 37 94.6 37 ...................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAGA 1787 37 94.6 34 ...................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCATA 1858 37 94.6 35 ...................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGGA 1930 37 94.6 39 ...................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAGA 2006 37 100.0 36 ..................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAAA 2079 37 100.0 38 ..................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAGA 2154 37 100.0 36 ..................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCAA 2227 37 100.0 43 ..................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGTA 2307 37 100.0 40 ..................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAGA 2384 37 100.0 40 ..................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCACA 2461 37 100.0 35 ..................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAGA 2533 37 100.0 35 ..................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGGA 2605 37 100.0 40 ..................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTAA 2682 37 100.0 33 ..................................... CCTATCAATGAAATAATCGTCAATGCAGTCTTA 2752 37 100.0 37 ..................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGATA 2826 37 100.0 43 ..................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGAA 2906 37 100.0 38 ..................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCAA 2981 37 100.0 38 ..................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGATA 3056 37 100.0 39 ..................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTCA 3132 37 100.0 36 ..................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACGA 3205 37 100.0 35 ..................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGCA 3277 37 100.0 36 ..................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAAA 3350 37 100.0 36 ..................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAAA 3423 37 100.0 38 ..................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTAA 3498 37 100.0 41 ..................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAGA 3576 37 100.0 38 ..................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTTA 3651 37 100.0 35 ..................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAGA 3723 37 100.0 37 ..................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACTA 3797 37 100.0 36 ..................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAGA 3870 37 100.0 35 ..................................... AAGATCCAGTTAAGCCTAACCTTAAACCTACCGAA 3942 37 100.0 36 ..................................... TTTTAATGTGGCTTAAGCAAATAGGAGTTTTAAAGA 4015 37 100.0 38 ..................................... ATTGCCTATAGCTGAACTGTATGAATACACAATGGGCA 4090 37 100.0 36 ..................................... TAAGTTAAGCTTAACCGATACCCGAAAAGCTAAATA 4163 37 100.0 35 ..................................... CCTGATACATGATGCCAGGCATAATTATAATCTTA 4235 37 100.0 37 ..................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCTA 4309 37 100.0 40 ..................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCAA 4386 37 100.0 34 ..................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAAA 4457 37 100.0 34 ..................................... TACAATCTATTAATGATTTAAAATCCAATTTAGT 4528 37 100.0 39 ..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTGA 4604 37 100.0 38 ..................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATAA 4679 37 100.0 36 ..................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAATT 4752 37 100.0 37 ..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAAG 4826 37 100.0 35 ..................................... TATGCCAACATATTCTGATATTTTCGATAACAACA 4898 37 100.0 38 ..................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAGA 4973 37 100.0 36 ..................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCCG 5046 37 100.0 37 ..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAGA 5120 37 100.0 41 ..................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACAG 5198 37 100.0 35 ..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAAA 5270 37 100.0 33 ..................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGGG 5340 37 100.0 33 ..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTTC 5410 37 100.0 38 ..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGAA 5485 37 100.0 33 ..................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCTT 5555 37 100.0 35 ..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGATA 5627 37 100.0 38 ..................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACTT 5702 37 100.0 36 ..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAAA 5775 37 100.0 35 ..................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAATT 5847 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 5924 37 100.0 37 ..................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGGT 5998 37 100.0 36 ..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTGC 6071 37 100.0 41 ..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCAC 6149 37 100.0 37 ..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTATG 6223 37 100.0 34 ..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGTT 6294 37 100.0 34 ..................................... AGCGCAAATAATCTGACCTGACAACGGATAACTT 6365 37 100.0 34 ..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATGA 6436 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 66 37 99.6 37 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCCA # Right flank : CAAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 8116-7909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSQ010000081.1 Aphanizomenon sp. FACHB-1399 contig81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ========================================= ================== 8115 42 100.0 40 .......................................... TCAGACAATGTACCACAGCGATCGCTCAAATTAACCGCCG 8033 42 97.6 41 ......................G................... TCAGACAATTAATCAGCGTCAAATTAACAACATTATCTGCA 7950 42 92.9 0 ...C........................T....C........ | ========== ====== ====== ====== ========================================== ========================================= ================== 3 42 96.8 41 AATACCTCATCCTGTAAATCCTAAAATCCTGGAAATCCTGAT # Left flank : GCTTGTATTCAATTTGCAGCAAAGTTGATGGGGAATCACTACGAAGTGAGAAAAATCGCATGAATGGGTTTTTATTCGATGAAAATCTACCCGTGAAAATTCAATTTACCCCATCTTTACCCATTGTCCATGTTTCCATCTTAGGTGACAGTCCAAGTGATACCCAAATATGGCAGTATGCGAAAGAAAGAAAACTGGTAATTGTTACCAAAGATGCAGATTTTTCTGATCGCATGATGGTTGATTTACTCCCGCCTAAAGTAGTACATCTACGCTTTGGGAATGTGCGAAAACGTCAATTTCACTCACTCCTGTCCAGAGTTTGGCCAGAAATTGAAATTTTAGTGGCTGATCATCAGTTAATTAATGTTTATTTGGATCAGATTGAAGCTTTTAAATAATTAATGTTTGATACTAGAAAGCGATCGCTTAAAATGATAAATCACATCCTGTAAGTTATCAGACAATTGACCACAGCGATCGCTACCAATTAACCACCG # Right flank : AGCGAAGCGTGGCGTTAGCCATTTCAGACAATTAATGCTACGATAAACAAATAATTACTTGGTATCATATCATGATGATTACTCAAGCACTGGAATTACAACCTAACACATCAGAAGATATCATTTTCCCACCCAGTGACCTATATAGTGATGAACCCCCCGTGGAAACAGAACTACATTTACGACAAATTATTCTCCTCTTTAAATGTTTAGAATGGCTATGGAAGGAGAGAACAGATTTTTATGCTGTCGGAAACCTAAGTATTTACTATAGTCCTCATCAAAAAAAATCAAAAGATGTTAGAGGTCCAGATTTTTTTGTAGTTTTAGGAACAGAACGAAAAACTAGAAAAAGTTGGGTAGTGTGGGAAGAAAATGGCAAATATCCTCATGTCATTGTCGAAATTCTTTCACCAACTACAGCTAAAACTGATAGAGAAATTAAAAAAGAACTTTATCAAGATACTTTCCGTACACCTGATTATTTTTGGTTTGATCCT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATACCTCATCCTGTAAATCCTAAAATCCTGGAAATCCTGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //