Array 1 2290760-2294877 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYO01000001.1 Shewanella algae strain NCTC10738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2290760 29 100.0 32 ............................. TTGATGGTGTTAGCTGGGCTGTTTCTGATTGC 2290821 29 100.0 33 ............................. CAGGTAGTAGCGACAACACAACAAGCCCCAAAC 2290883 29 100.0 32 ............................. CTTTCCTCTGGACTCTCAGCAATTCCTTCTGC 2290944 29 100.0 32 ............................. TCCACGTTGATAACGCGAACCAGCGGAATAAC 2291005 29 100.0 32 ............................. TTGTCGAACTATGTAATCCTTTGGGTTCATCT 2291066 29 100.0 32 ............................. CGCTTTGAGCTGTTGCTTTCACGCACCAAGAT 2291127 29 100.0 32 ............................. GGGCAAAGGCCGCACAGGTAGCAGGTATGGGC 2291188 29 100.0 32 ............................. ATATTCGCTTCATCTGCTCGCCGCTGTTTAAC 2291249 29 100.0 32 ............................. CGTGCGACCTGGTGCGTGACGGCATGGTGGGG 2291310 29 100.0 32 ............................. CAGTAAGTTCAGCCCTAACCCAAGAGCCGACC 2291371 29 100.0 32 ............................. CGAGACTGAACCAGGGTGGGTCGTGTCGGAAG 2291432 29 100.0 32 ............................. CCGCCGAAGTGTACCAGTTTGACGACGAAACA 2291493 29 100.0 32 ............................. CGTTGCGAGGCGTATCGCCGAACAGTTCGTCA 2291554 29 100.0 32 ............................. TTGCTCGTGGCGTTCCATTCCGTCGCGTATCT 2291615 29 100.0 32 ............................. CGCTCGACGCTGCACCCGCTGCGAACGCTGAG 2291676 29 100.0 32 ............................. GGTGCCGGCACTATCAAGTTCTATCACTTCGA 2291737 29 100.0 32 ............................. TCGCCGGCACTGATACAGGTGTATCGGTTCGC 2291798 29 100.0 32 ............................. GAATGAAAGGGTTTCAGGCGGGAGGAAGATCC 2291859 29 100.0 32 ............................. ACAGATGAGGAATGGGCAGCCCAGAGAAAAAA 2291920 29 100.0 32 ............................. CCGTTACCGTCTGCCCGGCACGGTGTAGCGGT 2291981 29 100.0 32 ............................. CATTATATGCTTCCATGTACGTGCGTGACGTT 2292042 29 100.0 32 ............................. GATCACCCTGTGCAGCGCTGTACATCCGTGCA 2292103 29 100.0 32 ............................. ACATGACGTTTAGTGTCTCGTTTTTTAGCGAG 2292164 29 100.0 32 ............................. TCAAGTGTGCCCATCGGTTACGCCGGTAACAG 2292225 29 100.0 32 ............................. AGAACCATCCTCTTGTAAACGTATCCATTCAA 2292286 29 100.0 32 ............................. GGCTTGTCACGACGTAATGCTCGGCACCGGCG 2292347 29 100.0 32 ............................. CCGGTAAAACCATCAACAGTGGTTCACTATCT 2292408 29 100.0 32 ............................. GCCAGCCCAGCAAAATTGCTGACCGGACATAA 2292469 29 100.0 32 ............................. CCGGTCACTTGGCACTGAACGTAACGAATCGT 2292530 29 100.0 32 ............................. GTCTGATGGACGTCATGGTCGAGGGGCCGACA 2292591 29 100.0 32 ............................. TGGTGAACCCGAAGAAACCGTACGGGATGAGC 2292652 29 100.0 32 ............................. ATTGTTCGATGAAAAATGTTCGCATCTCGTGT 2292713 29 100.0 32 ............................. CGAGCGGATCGGTGTCGATGGCTATATTGAAA 2292774 29 100.0 32 ............................. ACGACAACGGGGACGGAACAGCTGACCGTTGT 2292835 29 100.0 32 ............................. CAACGCATGCACTTCTGCGATATAAGGCGTGG 2292896 29 100.0 32 ............................. CATTGATTACGACCGCACTCTTTGCTGTTGGC 2292957 29 100.0 32 ............................. GAGGCAAAAATGGAAGACAGAGCACAGGTAGC 2293018 29 100.0 32 ............................. GAGCTAAAACAAACTCCCATGATTTCAATCAA 2293079 29 100.0 32 ............................. AAGACGGGAGGGATTCAAACGGATGTCTAAGA 2293140 29 100.0 32 ............................. GAGAGCATTGTTCATCACCGGGCATAGTTGAG 2293201 29 100.0 32 ............................. CAGCGCTTGAGCTTAAACACTAAATAAATCCT 2293262 29 100.0 32 ............................. TGTAGTTCGTTGACTTTGCGAACATGATTTTC 2293323 29 100.0 32 ............................. TCTGAAGTAAACCCATTATGTGCCAGTACGCA 2293384 29 100.0 32 ............................. CTGGTGAACTACGATTATTACGTCGCCGAAGC 2293445 29 100.0 32 ............................. CCAGCAGCTCGGCTGCTGCTAAAGCTGTCGAT 2293506 29 100.0 32 ............................. GTTTTTGCAGGACTCAGCAAACAATCAATAGA 2293567 29 100.0 32 ............................. TCGGGTGCAGGGCTTATCTGTAAAGAAGACCC 2293628 29 100.0 33 ............................. ACAACAACCCACTCAATTGCAACATCGATAATC 2293690 29 100.0 32 ............................. TGCACAGGTATAATTCGTTGAATTGCTCGGGG 2293751 29 100.0 32 ............................. ATAGACGCCCCTTTCCCTGAACGACCGTCACT 2293812 29 100.0 32 ............................. TGATCCGCTATCATTGGTGCAGCTCCTATAAA 2293873 29 100.0 32 ............................. CCTCCTGGGTACGTTGAGCATTATTATAAAAA 2293934 29 100.0 32 ............................. TTCGTGAGCCTTATCGTAAACGGTCGGGTAAA 2293995 29 100.0 32 ............................. AGTGATGAAGCACCGGAGTAGTCCCAAAAATG 2294056 29 100.0 32 ............................. GGGGCAAAAAGAGCCCCCTTTATTCATGCCTG 2294117 29 100.0 32 ............................. TTTAACATGAAGCTTGCGTGCCTCGTTAAGGA 2294178 29 100.0 32 ............................. CGCCCGAGGGGTCACCCTACGATTTTATCCAA 2294239 29 100.0 32 ............................. GGGCTGTAAACGTTGTTGCTGTCCCCATACGT 2294300 29 100.0 32 ............................. TGTTCAGGTCCGACGAAGAAAACGTCATTGAA 2294361 29 100.0 32 ............................. GACCGTAAATTCCAAGCGGCCGACATGATATC 2294422 29 100.0 32 ............................. TTCGACGCGGGTGATCTTATAATCTGTTGCCC 2294483 29 100.0 32 ............................. TTGGTTCGCTACTTTTAGCACATCATTAGAGT 2294544 29 100.0 32 ............................. ATTTATTGCAAACCAGCGTGCGGTTATCAGCA 2294605 29 100.0 32 ............................. GTGCTGGGCGAGTGCGGCATCGGCGCTCGATG 2294666 29 100.0 32 ............................. CGTAATCACGTGGATCGACTTGAGCAGGACTA 2294727 29 100.0 32 ............................. CACTCCATCCCTTACAGCGTCATGTTTAACAA 2294788 29 100.0 32 ............................. AACGCACTCTATCAGCGCGCGTATGTCGGGCT 2294849 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 68 29 100.0 32 GTGTTCCCCGCACTCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : GTTAGTTTAATGATTATGTGTGCAACAATTGTAGTGGCATAGTGAATTTGGCCATCTAAATAGACGAAGTGATAGACTCACTTTTCGCAAATGGGTGGCAGATATGAAGAACACAAGACCGACATTCAGCGCTGAGTTTAAGCTAGAGGCTGCTCAGCTAGTAACAAAGCAAGGCTATAGTGTGGCAGAGGCTGCAATCGCAATGGGAGTCAGCAATTCAGCCATGCGAAAGTGGGTAAAACAGCTCCAACAGGAACTGCAAGGCGATTCTCCCAAAGGCTCACCACTTACGCCTGAGCAACAGCGGATCCGTGAGTTAGAAAAGAAACTTCGCCGCATCGAAGAAGAGAACATTATTTTGAAAAAGGCTACGGCTCTCTTGATGTCAGACTCACTGAACAGTTCTCGCTAGTCGAGAAACTCAGGCAGAGCCATAGTGTAAAACTTATTTGTTCAGTATTTGGTATTCATCGCAGCAGCTATAAGTATTGGCGAGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2296170-2298151 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYO01000001.1 Shewanella algae strain NCTC10738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2296170 29 93.1 32 .T...........T............... GGGCTTAGGAGATTTGCGCTCAGGTTGTCCAA 2296231 29 93.1 32 .T...........T............... GGGGATTAACTAGAATTGATTTGTCGAATCGA 2296292 29 93.1 32 .T...........T............... CCATACGCAACCACTGATTTTGCTTTTGGTTC 2296353 29 93.1 32 .T...........T............... GATTTCGACAGTTACCATTACTCAACCTTAAG 2296414 29 93.1 32 .T...........T............... AAACAGCTGAACACTACGGTTTACCAGTTGCA 2296475 29 93.1 32 .T...........T............... TTGGTGGTGATTATGATTATCGTACTGAATGG 2296536 29 89.7 32 .T...........T.....A......... TGGTTCGTCTGGTTTGTGATTGGGCTCAATAC 2296597 29 93.1 32 .T...........T............... GGCGAGCTGGCCGCCGTTAACACCGAAATCGA 2296658 29 93.1 32 .T...........T............... AGCAGCGCGAATCCCTCGGCCGCCCTATCAGT 2296719 29 93.1 32 .T...........T............... GCCGGAACCGTAACCGTTAACGAGGTGGCCGA 2296780 29 89.7 32 .T...........T..............T CAAGGCTTAATCGCCTGATCAAGAACCTTGGA 2296841 29 96.6 32 .T........................... TCACCCTGGAGTCAGCGGCCTGAGATATTGCA 2296902 29 96.6 32 .T........................... ATTTACTTGTAATCATAATTGAGGGAACAACA 2296963 29 96.6 32 .T........................... GCCAATCTCAACAACACAGATTTAGCCAGTAA 2297024 29 96.6 32 .T........................... GCAGGGCAGGCGCAGCTAATCGAGTGGTGAAA 2297085 29 96.6 32 .T........................... CCAGATACTCTTTGGTACCTGCCGGCAGTATT 2297146 29 96.6 32 .T........................... CACTGTAGGAACGCTGAGAATTGATATTTCAC 2297207 29 100.0 32 ............................. AGCGCCCAGACAGGCGGTCAGGCATTAGGGGT 2297268 29 100.0 33 ............................. TATCGGAGGTCGAATGCTGGTTAAGCCATTGCC 2297330 29 100.0 32 ............................. TCGCAGAACGTGCGCTGGAATGCGCGGCTTGG 2297391 29 100.0 32 ............................. CCGCTTGAGTATGTCGAGCGTGACGGCTACAC 2297452 29 100.0 32 ............................. CGCGTCCTTGGCCTGCTTGCGGCGATGGATTT 2297513 29 96.6 32 ............................T GTTTTAGTCATTTTCGCACAGATACCGCTGTG 2297574 29 100.0 32 ............................. GTGAGAAGGTTCTTTGATGACCTGCTCGACTT 2297635 29 100.0 32 ............................. GGGTGACGCATGGCACGTAATTCAATCAAGCT 2297696 29 100.0 32 ............................. TAACAATCGTTTCATAGCTTGCCCCTTCTACA 2297757 29 100.0 32 ............................. GGTTGGCCTGCAACTCAACCCCGTATCTAAAA 2297818 29 100.0 32 ............................. TCACAGAATGAGAGAATCGATCCAAACGGCGA 2297879 29 100.0 32 ............................. GAACCCTAACTTGCTTTGTTGGCTCAGCGACC 2297940 29 100.0 32 ............................. TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 2298001 29 96.6 32 .........A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 2298062 29 96.6 32 .T........................... TCAAGCCAAGCGGGAATGAAGTTGCAACTGAC 2298123 29 89.7 0 .T........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 96.3 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : CGTATGTGTGGACTTGCAAAGGTTGGGCTTATCTGGCGGTCGTGCTGGATCTATTTGCCCGTAAACCGATAGGTTGGGCCATATCCTATTCGCCTGATAGTACTCTAACGAGTAAAGCCTTAGTGATGGCTTTTGAAGCGCGAGGCAAACCGAAACACCTTATGTTCCATAGCGATCAAGGTAGTCACTATACGAGTCGTGGCTTCCGACAGCAGCTTTGGCGTTATCAGATAAAGCAAAGCATGAGCAGACGAGGAAACTGCTGGGACAATAGTCCGATGGAGCGTTTCTTCAGAAGCTTGAAAACAGAATGGATACCGATGACCGGCTACCGAAGTATCAGTGAGGCTCGGGTTGAAATATCACGATACGTGACGGGGTATTACAGTCAGCTTAGACCGCATCAATATAACGGTGGGCTGACACCGAACGAGTCAGAGCGAAGATACTGGCTTGAATACAAAACCGTGGCCAATTTAACTTGACCACTACAAATTGAC # Right flank : GTATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACACTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTACGGGGTAAACCTGCCTGCTCGAATAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : GTTCCCCGCACTCACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //