Array 1 1487613-1491182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001368.1 Desulfovibrio carbinoliphilus subsp. oakridgensis strain FW-101-2B chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1487613 29 100.0 32 ............................. ATTTCGGTCCGGCACGTCTTCCGGGGCTGCCC 1487674 29 100.0 32 ............................. TCTGCATATCGCAAATCATTCCAAAGCATCCG 1487735 29 100.0 32 ............................. ATCTATCTATCTCTCTTGAGGCCATCCAGGCC 1487796 29 100.0 32 ............................. TTTGCCGCAGCGGCAGACTACGTTGGCATGTC 1487857 29 100.0 32 ............................. AGCATCACCGGGGATGATGTCAACTACTATGC 1487918 29 100.0 32 ............................. GGCATGTGGCGAGATAGCCCCAAGCCGGCCGG 1487979 29 100.0 34 ............................. AGCTGAAACCCCGTGGTTATCTGATTTCTCTGAT 1488042 29 100.0 32 ............................. CCTGCCGTACCTCGTCGAGGTAGGCTTGGCCA 1488103 29 100.0 32 ............................. ACCAGCCTTTCCGCCTCATCAAGATCTCGGCC 1488164 29 100.0 32 ............................. GTCGAACTGGCGACGACGACCGAGGTACAGAC 1488225 29 100.0 32 ............................. ATCATTTCCGTGGAGCTGGAAATCCCGATTAT 1488286 29 100.0 32 ............................. TCACAAAACCCCAACAGCGCCACGGGGAACGC 1488347 29 100.0 32 ............................. ATCATGTCGCCTTCTATGATGGTCGGTTCCAT 1488408 29 100.0 32 ............................. GGCCGAATGTCCCGAGCCCGTCGTCGTCACTG 1488469 29 100.0 32 ............................. TCCTCTCGCCAGGCGAAGCAAGGATGATTTTG 1488530 29 100.0 32 ............................. GCGGATAATGGAATTTGCGTGCATCGACCTGA 1488591 29 100.0 32 ............................. ATCGCGGACACGATTTGGGAGGTGGCGGAGGG 1488652 29 100.0 32 ............................. CTGGCTCGGCTGGAACGCCGGCTGGACGGGAG 1488713 29 100.0 32 ............................. TCATCTCCCCGCACGTAAGCGGTGGGCGTCCA 1488774 29 100.0 32 ............................. GTAGGGATGATATCGCGTGGCTATTTGAAACA 1488835 29 100.0 32 ............................. CGACCTGGAACTTGTGGTATTCTGTTTCGGTG 1488896 29 100.0 32 ............................. GCGACGCACGGCCCGGGTCGGCCGCAGCCCTA 1488957 29 96.6 32 ...................A......... TCGGCTCCTTCCGTGTTGAGTGAGGCCGCAAA 1489018 29 100.0 32 ............................. GCAACGGGCGAGTCACGGCAAAATCTAGGGTC 1489079 29 100.0 32 ............................. GCGGGTGGTTTGCGCAAGTCCCATGCGGCCCC 1489140 29 100.0 32 ............................. GCCAGAGGGTCGAAGGAGAGCCGGCCGACCAG 1489201 29 100.0 32 ............................. TATTACGGCCAGGGCATCGGCCAGCCGTTGAC 1489262 29 100.0 32 ............................. CGTCAGCAGGCCGTGACCGAGCAGACCGAGCA 1489323 29 100.0 32 ............................. TGCAACGTTGACCCCGGCTTTGCCTGCGTGTG 1489384 29 100.0 32 ............................. TGCGCCGCCGTGCCCTCGTCGGCGTAGACCGA 1489445 29 100.0 32 ............................. GCGAGCCCAGGACTTCTTTGTCCGCGATTTGC 1489506 29 96.6 32 ............................A TCCTGGATGTCCTCGACGACGGGAAGAAGTTC 1489567 29 100.0 32 ............................. TGATCGTTGTCGCCATCAAGCGGGACGGCTCT 1489628 29 100.0 32 ............................. GTGGACCAGGTCTTCTGCCGAAGCCGGTGTGC 1489689 29 100.0 32 ............................. ACGGCGACGACAACGGCCGCGCTGTCCCCGGC 1489750 29 100.0 32 ............................. GTGGATGGGGAGATCTCCCGGGACTTGGCCCG 1489811 29 100.0 32 ............................. TCAATTGTTGCGCCGTTTTCCCGACCCCACAT 1489872 29 100.0 32 ............................. GCGGAAGCCGAATGCGACCAGTTGGAACGCCT 1489933 29 100.0 32 ............................. GCTACCCGATCATTTTCGCGGGGGAACTGCTC 1489994 29 100.0 32 ............................. CCCGCTGTGGCCGTGGCCGGCAGGGTGACTGT 1490055 29 100.0 32 ............................. AATCATTTAACGGGATATTGTTTATTTTATAA 1490116 29 100.0 32 ............................. TCGCAGCTTACCACGTTCTTTTCCGTGGGCCA 1490177 29 100.0 32 ............................. AATTCGACGCTGCGTTGCGTCGGACCAGATGA 1490238 29 100.0 32 ............................. ACCCAATGCCCAGTAGTACCCATTAAACCGTG 1490299 29 100.0 32 ............................. GCCGACGTCGCGGCCGGGGAGGTGGATTTGAT 1490360 29 100.0 32 ............................. CCATGGGCTCCCCCGTCCTCCTCGCCGTCTCC 1490421 29 100.0 32 ............................. GCCGTGTAGTGGCTCGGATGGTTGACCGCGTC 1490482 29 96.6 32 ............................T TTAACCCCCGCCGAACCAACTTCAGCGGGGGC 1490543 29 100.0 32 ............................. TTTTCCCAGTTCACGACGGCCGCGCACATAAA 1490604 29 100.0 32 ............................. GCGGCCAAAAATGCCTGAGCCGAAAACCCTCC 1490665 29 100.0 32 ............................. GTCAATGCCATAGTTGCTCGCCATTGCAGCGT 1490726 29 96.6 32 .................T........... TCATGACACCACAGGCGGCCGTTTTGATGCAG 1490787 29 100.0 32 ............................. ACCCGTCCCAGGTCCGGAGCGTCCTTGACCTC 1490848 29 100.0 32 ............................. GACATGGTTTCCAGGTTCGAAGCGGAGACAGA 1490909 29 100.0 32 ............................. AGAACGAGCATCCGGTGAACAAGCACGCCCTG 1490970 29 100.0 33 ............................. GGTCCAGGCCCTCATCCTCGCGCAGATGGAGGA 1491032 29 100.0 32 ............................. GCACATCCGTGCGGCCGCCGGGGAGAGGGTGT 1491093 29 100.0 32 ............................. AGCTTGCCGAGGGTGAAGCCGCTCTTGTCGGC 1491154 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 59 29 99.7 32 GTGTTCCCCGCAGGCGCGGGGATGATCCG # Left flank : CGCATCATCCCGGACATTGAGGAAGTCTTGTCCGCTGGCGGCATTCCCATGCCGCAGGCCCCGGCGGATGCGATTGGTCCGGCCTTTGCCGACGAGGAGGGACTTGGCGATGATGGTCATCGTTCTTGAGAATGCGCCGCCCCGTCTACGTGGCCGTCTGGCCGTGTGGCTGCTGGAGATCCGGGCCGGGGTGTATGTCGGGGATTATTCGGTGAAGGTTCGGGAGAGGATTTGGAACACCGTGGAAAACGGTCTCGAGGACGGCAACGCGGTGATGGCGTGGAGCGCGCGCAGCGAATCGGGGTTCGAGTTTCGCACGCTCGGGGCCAATCGGCGAATGCCTATTGATTTTGACGGGTTGAGCTTGGTTTCCTTTCTCCCTCTGGAGTCGGTTGAAAGCAATTCCTAACCCACTTTTTTCATTGACAATTCAGAAAGTGTATTCTGGTGGATTTCAGGGCATTGAAAAATGCCGGTAAAATCAGCATACTGCCATACCA # Right flank : AGCACCATCGACCCCATTCCTCATAATAGCGATCTTCCCTTCAATGGCATCCTTAGGCCTTTTTATGCCGCCGCCCCTCGCTGCCCTTTCACCTCTTCGTACATGGCGTCCGGGGCCACGTCCGCGCCGTTGATCATGAAGTTTCAATCCGCGCCCCCGCGCAGGGGGCGACCCGCCTCACGCTTGGCCTGCGCCTCGGCCTCTTGGTTTCAATCCGCGCCCCCGTGCAGGGGGCGACAAACCGACATGTAAGGAGCGACACCATGCTGCGACCGTTTCAATCCGCGCCCCCGTGCAGGGGGCGACGTTGTATTTGTGTTTTGGGATCATAGTCGGATGGTGTTTCAATCCGCTCCCCCGTGCAGGGGGCGACGCCCAACGATGAAGCGGGCGGCTTTTGGGAGGTGTTTCAATCCGCGCCCCCGTGCAGGGGGCGACGTCCCGGCCTTGTCGGCGGCGGCCAGCTTGTCCTTGTTTCAATCCGCGCCCCCGTGCAGGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1495944-1491322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001368.1 Desulfovibrio carbinoliphilus subsp. oakridgensis strain FW-101-2B chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1495943 32 100.0 34 ................................ CCCCGGGAGGGGCGGGAGTCCGGCGGCATCGTCG 1495877 32 100.0 34 ................................ CTGGACGAGGTGGACCTGTACCGCCAGATCGCCG 1495811 32 100.0 39 ................................ TTAAGTCCGTCAGGTCGAGGTGCCAATTGACAAATTCGC 1495740 32 100.0 34 ................................ TTAAGGGTCTCGATCCTGGCGGAATTGATCTCCC 1495674 32 100.0 35 ................................ TCACGTCCGCGTTGAATCTCATGGCGACGACGACC 1495607 32 100.0 35 ................................ GACTCGCAGCCGGTCGCCTGCGTGGTGCTGCTTCG 1495540 32 100.0 35 ................................ TCCGCGCCTTCGTCTGGCAGTCGCAGGGCCTGCCG 1495473 32 100.0 34 ................................ AGGTGCAGGTTTCGGAAACTGGCCTCGGCCGAGG 1495407 32 100.0 34 ................................ CCCTCCTGGATTACTGGTTTGCCGTGATGGTAGA 1495341 32 100.0 33 ................................ TTTGCACCTGCGCTCCCGGGGTGGTTACCGCTG 1495276 32 100.0 35 ................................ AACCATCGGGTGGTCGCGGCCGAAAAGGTCCACCT 1495209 32 100.0 37 ................................ TCTGGAGGAGAAATTCCGAACGCCGGGCCTGGGCCGT 1495140 32 100.0 34 ................................ TCCACGGACTCCATGCCGGTGAAGGTCACGTTGA 1495074 32 100.0 35 ................................ GACCAACCCGGCCATGGCCGGATTGTTGGCCCAGA 1495007 32 100.0 34 ................................ CGGATCTGGCGCATCACGCGGGCCGGTACACCTT 1494941 32 100.0 36 ................................ ATGGACATGGGGACCGGCAAGTCGCGGACCCTGCTG 1494873 32 100.0 34 ................................ GTAATGATCGCGACCATTTGTGTGGTTGAATGCG 1494807 32 100.0 33 ................................ CTCTGTTGGGGAGCCGCCGCCGTGTAGGGGGAG 1494742 32 100.0 34 ................................ GTTGCCATGAAACACGTCACCCTGGGCCACGGGT 1494676 32 100.0 34 ................................ AGCCGTTCGTCCACCATGTCCTTGAAGTGGCCGG 1494610 32 100.0 36 ................................ GGTCGGACAATCTCAAGCAGCGGCCCCTTGGCCACA 1494542 32 100.0 34 ................................ CCTTGCCGTTTCGCGACCGGCCCCAGAACACGAA 1494476 32 100.0 35 ................................ CAGGGGATGTCCAAGGACGAGGTCGAGGCCAAATA 1494409 32 100.0 34 ................................ ACGTCTGTCCATGGGGATGAATTATCTTATTGGA 1494343 32 100.0 34 ................................ ATCCGCCAGTTCTGCGACCCGATCTGGACCATGG 1494277 32 100.0 34 ................................ TCGTCCTTGTTGACGAAGGGGATGAGCACCTTCT 1494211 32 100.0 34 ................................ TCAAACCCCTCGGCCGGGTTTGATATCGAGACCT 1494145 32 100.0 36 ................................ AGCCAGGCCCTGGGTTTTCTGGGGGGCAGTGATGCC 1494077 32 100.0 35 ................................ ACGCGTTGGTAGAACCGCTTCGTTTCGTGGTCGTA 1494010 32 100.0 33 ................................ ACCGCATTGGCCGCCGTGATGACCGTGGCCAAT 1493945 32 100.0 34 ................................ GTCTATTCCGTGCTGGCCCATGCCGTGCGGCCGG 1493879 32 100.0 34 ................................ GACTCAGCACCTGGGACAGCATTGATCCAGGGAG 1493813 32 100.0 35 ................................ ATAGCATTTTCCCTTCAACGCGGGGATCGCCCGCA 1493746 32 100.0 35 ................................ GTCTGCAACCAACTTTCGGCGGCATCAGGACCTCA 1493679 32 100.0 35 ................................ CACCGCTACCGGGTCATGCAGACCTGCCTAGACAT 1493612 32 100.0 34 ................................ CGCGAAGAGTTCCCCAGCCCGGACCTTGGCGCCG 1493546 32 100.0 34 ................................ CGACATGGAAGCGGCTGTGCGTCTGCATCCTGAA 1493480 32 100.0 34 ................................ ACGATGCCGAACTATGACATTTCCACTTCTCAGG 1493414 32 100.0 35 ................................ CACAGCACGCTGCACAGGGCCTCGTGATACACAAG 1493347 32 100.0 35 ................................ TGTTCCGCCTTCATGAGCTGGAAAGAACCGCACAA 1493280 32 100.0 34 ................................ CTCCTGGCTGCTCGGTCTGACGTTCGAGCCAGCG 1493214 32 100.0 36 ................................ TTTTTTGTTTCTCTCGCGTACCCGTTATAAAGGTCG 1493146 32 100.0 36 ................................ CGGTAGTGTTTTGATCGGCGCTTTTCTCCCCGGCCA 1493078 32 100.0 34 ................................ CTTCGCAACGACACGAAACTTCGGGTCGGATGTT 1493012 32 100.0 33 ................................ TGCCGCCGCTATCAGGGCCGTTGTGCGGGTGGC 1492947 32 100.0 34 ................................ CCCCTATACTGTGTAACAATAACATCTCCTCCGG 1492881 32 100.0 35 ................................ CTGATCGTTCATGTCGCAACCGGCCAAGACGGAAA 1492814 32 100.0 34 ................................ ACCTTGTCGTGGAGCTTGACCTTGCGGCTCCCCC 1492748 32 100.0 36 ................................ TCGGACATCCGCAAAGCGGCCACGTTCGGGGCTAGG 1492680 32 100.0 33 ................................ CACCCGTACCACTCGCCGAAGCGGTACAGCCGG 1492615 32 100.0 36 ................................ TGAATCGCTTCGGAAACTGACGTTTTTTGAAGGAGG 1492547 32 100.0 34 ................................ CCCGATGAACCGCACCGCGCAAAGCAGCTTTCCG 1492481 32 100.0 34 ................................ CCCGATCCGATCTAATGCTTCGGCATGAGCACCG 1492415 32 100.0 34 ................................ TTCGGCACTGCCGATCATGAAGAAAGCCCTGAAG 1492349 32 100.0 34 ................................ CGATGATACCCCCCGCAATGGCGCCCGCCACCTG 1492283 32 100.0 35 ................................ ATGGACTGGAACGCGGACCGGAACCGCCCGTATGA 1492216 32 100.0 34 ................................ TGCATCCAGTCGAACATGCGGTTGATGCAGTCGA 1492150 32 100.0 34 ................................ CTTTTCGCCGCGACCTTCGGCCTGCCCCTCCGCC 1492084 32 100.0 35 ................................ CCCCGGGCGCGAGACAACAGCCTGCACCGGGATAG 1492017 32 100.0 34 ................................ TGCCGCCAAGTCGGCATAGGTCGCTCCGGCCGAA 1491951 32 100.0 34 ................................ CGTCTCCTTCGTTGCGCGGGTGCTGGTGTCACAG 1491885 32 100.0 34 ................................ AGTGCTTTCCATTTTGGAAACAACTGGCGCGGGG 1491819 31 96.9 35 .........-...................... CCGAACTCGCCGAAAAAGATCCCCGGGGGCCTAAA 1491753 32 100.0 35 ................................ CGGTCTTGCTGACGTGGACCCCTGGGACAAGGTGC 1491686 32 100.0 35 ................................ AAGGACAAGCTGGCCGCCGCCGACAAGGCCGGGAC 1491619 32 100.0 33 ................................ ACCTCCCAAAAGCCGCCCGCTTCATCGTTGGGC 1491554 32 96.9 35 ...................A............ ACCATCCGACTATGATCCCAAAACACAAATACAAC 1491487 32 100.0 36 ................................ GGTCGCAGCATGGTGTCGCTCCTTACATGTCGGTTT 1491419 32 100.0 34 ................................ CAAGAGGCCGAGGCGCAGGCCAAGCGTGAGGCGG 1491353 32 96.9 0 ............G................... | ========== ====== ====== ====== ================================ ======================================= ================== 70 32 99.9 35 GTCGCCCCCTGCACGGGGGCGCGGATTGAAAC # Left flank : GGCTATCCGCCGCTGTTGTGGAAGTAGGCCATGCTGGTGCTGGTGAGCTATGACGTCGCGACGTCCGATGCCGGCGGTCCCGGCCGCCTGCGACGAGTGGCCAAGGCGTGCAAGGATTATGGACAGCGCGTGCAGTTTTCGGTGTTCGAGTGCGTGGTGGACCCGGGCCAGTGGGAGCGCCTGAAACATCGTTTGCTCGGTCTGATCGATGCGGACAAGGACAGCCTGCGATTTTATTACCTCGGTTCCAACTGGCGGGGGAGGGTGGAGCATGTCGGCGCCAAACCGGGCGTGGACCAGGAAGGCCCGCTCATCGTCTGATGCGCGAACCGGCAGCGCCCGCCAAAACCCCGGGGGCATCGCGCTTTAAAAAAGTTCAATGATAATAAGTAAATGATTTCGCTATGCTCTTTGACAAGAGAGTACGTGTTGTGAAAAGAAAGGAGGTCCGCGGCCAGGAGTCCCTGAAGCCGCATACATGCTCGGTCGCGAAAGCGACA # Right flank : TTCATGATCAACGGCGCGGACGTGGCCCCGGACGCCATGTACGAAGAGGTGAAAGGGCAGCGAGGGGCGGCGGCATAAAAAGGCCTAAGGATGCCATTGAAGGGAAGATCGCTATTATGAGGAATGGGGTCGATGGTGCTGGATCATCCCCGCGCCTGCGGGGAACACGCCGACAAGAGCGGCTTCACCCTCGGCAAGCTCGGATCATCCCCGCGCCTGCGGGGAACACACACCCTCTCCCCGGCGGCCGCACGGATGTGCCGGATCATCCCCGCGCCTGCGGGGAACACTCCTCCATCTGCGCGAGGATGAGGGCCTGGACCCGGATCATCCCCGCGCCTGCGGGGAACACCAGGGCGTGCTTGTTCACCGGATGCTCGTTCTCGGATCATCCCCGCGCCTGCGGGGAACACTCTGTCTCCGCTTCGAACCTGGAAACCATGTCCGGATCATCCCCGCGCCTGCGGGGAACACGAGGTCAAGGACGCTCCGGACCTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCACGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGGGCGCGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //