Array 1 1069865-1069093 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNJK01000002.1 Reticulibacter mediterranei strain 150040 sequence2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1069864 35 64.9 37 --.TG.G.TA.TT..CC.T.................C ACATCCTGCTGCATCTTGCCCTGTTCACGGCTGATAT CA [1069850] 1069790 37 86.5 37 .......GA.CA........................C GTTGCGCAGTTCAGCAGGAGCCTGCTGGTACGCATCA 1069716 37 89.2 35 .......GA.CA......................... ACTTGCAGCTTGCGCCATATAATATCTTGTACAAG 1069644 37 100.0 36 ..................................... ATTGTGCTGATGATTATCCAAGCCATTCTGGGTGAT 1069571 37 100.0 38 ..................................... CCCATCCAATAGCTCATGCATGCCAGGATGTGTCTTTG 1069496 37 91.9 38 ...A.....A.T......................... ATACTGCTCACCAGGCAATCCCCAGAGGATTTGTTGAT 1069421 37 91.9 36 .........A..C........C............... TTGACTTTCAGCTTATGGCCGATCAAGACGCAAAAA 1069348 37 91.9 36 .........A..C........C............... CTTGGAGTCGATATGGACCCTCAAGGACATTTGAGC 1069275 37 91.9 37 .........A.T..T...................... TCGGGGCGGGATGTGTTGCATGCGTTCTGTAATGGTC 1069201 37 94.6 35 .........A.T......................... AATCCTTTTTGGCTGTACTCAATCCCGACGATGTT 1069129 37 83.8 0 .......C.............AC..G.........CC | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 89.7 37 GTAGCAATGGGCGGCTTCGCGTTTGAGCGATTGAAAT # Left flank : GCGATCAAGCCTTCTCTGATCCGTAGCAGAAACGCTTTGAGGTAGGCGGAGAACGGATGGCCGTGGGAACCGTAGCAGTTGGAACGGCGGGCAAGGCCCTCGATCAACCACCGACCAATCAAAGAGAGCAAAGAAGGCACGATAGTCCTGGACAAGCGGATCAACATCGAGCAGGGAGGCGAGGGTGGACTGGTCAAAGCGAACAGATGCAGGTATCTGAACTATCGACTCCTTCGTGTGAGTGGATGTAGTTTTTTGATACTCTGCACGAAGGGTTTTTCTTGTTGCAAGAGGCCCAGGACGTTTTTGCTACAGGAACGGGAATCGTTTCAGCGAGAAGTGACTTGCTCGATTTTTGCTCGACCAGCAGGTGAAGAAACGAGGGATGTATTCGTGTTCTGATCGAGAAAAACGGCACATTTCCATTGGAACGTTACTTGCTCATGTTTTTGGGGAAATGCTCTTCGATCCGAAATCGGAGAAATTCCCGATTTCCATAA # Right flank : AATGTAGTTATTCGCGGCGACTCGACGCGCTTCAATGTGGGAACAAGGCTTTTCGCGACAGAGAGGGGTGCAAGTAACTCATGAATAGAAATAGGGAATTTTCTCGATTCTGGATCGAGCAGTGTTTCCCCAAAAACACGAGCAAGTCACTTTCCAATGGAAATCCACTGTTTTTCTCGATCAGGACACGAACACGTCCCTCATTGCTTCATCTGCTGGTTGAGCAAGAATCGAGCAAGTCACTTCTCGCTGAAACGACTCCCGCTCCTGTAGCATAAACGTCCTTTCCCTCTTGCGAGAAGAAAAACCCTTCGTGCAGAGTAGTAAAAAACCACATCCACCACACGAAGGAGTCGATAGTTCAGATACCTGCATCTGTTCGCTTTGACCAGTCCACTCTGGCCTCCATGCTCGATGTTGACCCACTTGTTCAAGAATACCGCGCCTTCTTTGCTCTCTTCGACTGGTCTGTCGTTGATCGTTGGCTTGCCTGCCGCTCA # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATGGGCGGCTTCGCGTTTGAGCGATTGAAAT # Alternate repeat : GTAGCAATGAGCCGCTTCGCGCTTGAGCGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 2 1378700-1377767 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNJK01000002.1 Reticulibacter mediterranei strain 150040 sequence2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1378699 36 83.3 38 ..A......GGC.........AG............. TTCTTGACTTTAGGCAGACACCAAGACAAAAGCCAACC 1378625 36 83.3 38 ..A......GGC.........AG............. CACATCGTATTGTCTGATAGATAGCTTATGGCATTCTT 1378551 36 75.0 38 ..G.T.GA.CGA.........AG............. CCTGCTATCCGTCTAAGCTTCCCCAATAATCGGCGGCG 1378477 36 80.6 38 ..G.T.GA.CGA........................ TCCCTACCAGGATCGTGACCAACCACATCACAATGGCA 1378403 36 100.0 38 .................................... TCAGCCTGACCGTGTCTGGTCGGAAGGCTAATGATGAA 1378329 36 97.2 40 ..A................................. TTGTGAATCTCGTATGCCGCCTAGCCATTTTCCACACGGA 1378253 29 77.8 40 ..A..........-------................ TAAACTCATCGGCTGCGGCGTAAAGCCGCTCATCAGCGGA 1378184 36 97.2 39 ...........A........................ TCCCTGTTGGGCAACAATTGCCAAGTACCTCGTATGGCA 1378109 36 100.0 37 .................................... CTCAATTGAGGCCGAGACCGGCGTGGCGTTGCACGAA 1378036 36 80.6 40 ..G....GA.C.ATT..................... CAGTCAGGAAGACCTCGAAAGAGGTAAGGCGTTACCTATT 1377960 36 75.0 40 ..G....GA.C.ATT......A..A........... TGCCCAATAGGTGTTGTTGCGTGTATTCGTGGTGGCATTG 1377884 36 77.8 46 ..A...GATC..A.G......T.............. CGCACGTATGTACGGCTTCACCCCACACGTCGAGCGATTGCGAGAC 1377802 36 72.2 0 ..G....GA.C..TT..T...T............TC | ========== ====== ====== ====== ==================================== ============================================== ================== 13 36 84.6 39 GTTGCAATGATGGGCTTCGCGCTTGAGCGATTGAAA # Left flank : TCGTTTCATTGGAAACGATCCTACCATCGATGGATATGAGCAATGGGACCAGAAAATCTGTGGGTTCTCAAGGGATGTGGCATTCCAGCTTGCTGAGAAGGGTATTGATGTCATTATTGACGAGGGATTTTGGGAAAAAGAGCAACGAGATGAGATGAGAAGAAGAGCAGATACCATTGGTGCTCAGGCGATACTGTACTATGTTGAAACGCCGATAGAAACGATACGAGAAAGGGTTGTGGGAAGAAACAAGACTCTCACGAATGACTCGTTTCAGATTAGCCGAAAATTGTTGGATACGTATCTGATGTATTGGCAACCTCCTAGTGAAGATGAAGATTACATTCTCGCCGGTGAGATGAAATAACAGAGATCAATTCCTCTGGAGTGGGAGACAAGCAAAAAAGATGTCCGAGCAATCTGGTATACTTGCTCATGAAAACGAGCCTCTCGCAAAGCACCTTCTCCACGAGCTTTCTTGGCCGGTTCGCAGCGAGAGG # Right flank : CATGAGGAAGCGCCGAGTCGTTGCCGGAGGTTCCTCAGCAGCAAGCGAGGGAGCGCCGAGCACGCTCTCCTCGCTCTCGGTTCAGTCTTCGCTCTCGCCTCTCCCCTCAACCAGGGAAATGCCTAGCAGATGAGCCAGTTCCTTCGTCGCCTCAATCACGTATCTAGCGATTTCGGGACGTGTCAGATGATAAACATGTTCCTCATCACAACGCCATCTCCATCTTTCTCATCATCAAGACGGACCATTTCTCGCCACATACTTGCAGCAGGTGGGCGCGTCGCGCAAGAGGGCTGGGGACGGGTCGAGAGACGTGCCTAGCGATGGAGAGCCATCCTCAAACATCCCTTTTGCTCTGTATTAATCGTTTTGCGTTCTCTTGCTCTTTCTGCTATTTTTTTAGGATGACGGCCTATGTCAGCGTCTACTACGAGCTAGCCTGCTGGAGCGAATCCATCTACCCACGAATGGTCGTCTCCGCGACCAATCCCAGATGGAAC # Questionable array : NO Score: 4.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.23, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATGATGGGCTTCGCGCTTGAGCGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //