Array 1 325493-325281 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810762.1 Rothia sp. HMSC069C04 Scaffold205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325492 29 100.0 32 ............................. AGCTGAGCGGCAATCTTGGGGTTCATGCGCTC 325431 29 96.6 32 ............................G ATGGTTCCCTGGCCTGACCACGTTCAGTTGCT 325370 29 100.0 32 ............................. TGCCACTGCATCGTCAGCTTGAGCGCGTTCAG 325309 29 72.4 0 ...........ATC..........TTTTA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGTACTAGTACTGGGGCTGGCCGGTTGTAGCCAGGGCACTATCCCTCAAATGCAGGCTCAGAGCCCGTCTGATAATGGTCAGCAGGCGGCGGCTGATGCAGCCCTGACATGGTTCAAAGCAACTGAGCGTGGAGCATGTGAGCTGGAATCGGAAAACTACAAATACCACAGTTCTGATTGCTCAACGCTGGACAACAGCACCCCTGCTTGGAGCAGTGCCGAGAATCGTCATGTTCTCCGTACCGTACGGTGGGGCAAGGACGCTTGGGCAGTCGTTATTGCTAATGGTGACAACGATTCTTCCCCGGCTGTGCTTGGTATGGTGAACGAGGGTGGCCGCTGGGTGCTCAAGTCACGCGGTGAGCTTAACCAAATAGCGAAGGGCTCGAAGAACTCAGAGTGTGCTGCACTCAGCGGTCCGAATGCACCCGAATGTGCTGAGTAACGTCGTATGATTCTGTAGCTTCTGCATCAGCTATCTGTTGAGTAACGGTGCCCTA # Right flank : GAAAGCCTTGTTTACCAGCCCTCCCAAAATAGAGAGGGCTGGTAAGCAGCGCACCCAAAAATATCAGCCTAGTTGCACACAAACCACACCCCAGCCGCTGAGCAACGCCTCCCTCTCCTCACCCTCCCACCCCATACCAACTTCCGGCAAACCTTGCCAAATATCGCCCCTACTTCGTTAAATATCAAAAATGGGCGTAAAATCACCGCCGTTTCGTCTTCGCTTTAAAGGGGACCTTAAGGTACGCTAGATGACTGGGTCAGGGAACCATGCCGGTCTCACTCACCGCGCATCCGCCCGACAGACACCCGCCCCTGCACACTGCGTCTCACTCACGCATACAGGGGAGGGAACCCAACGTATCGGCCTCACTCACCGTTTACGCCGCTGTCCGCGCATCCTGCCACCCGTAACTCACTCAACTCAAACAAGAACTGAATAGGACAATCATGCCCTTGCTTACCCATCGACTCTCACGACGATTTTTCGTAAAGGGTGCT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 330236-327462 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810762.1 Rothia sp. HMSC069C04 Scaffold205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 330235 29 100.0 32 ............................. CGCGGCAGCGTTTCGAGCGCGAGAACCCCGGC 330174 29 100.0 32 ............................. AGCTGGTACAACCGCCGCTCTAGCCCCGGTGT 330113 29 100.0 32 ............................. CCGCGGCAACCTGTTCACCCAGCGAACCAGCC 330052 29 96.6 32 ............................T AATCACCACTCAATAATATTTGACTTATTCGA 329991 29 100.0 32 ............................. CCGTTGGAGCACCCGCGCGCGAAGGTGGACGG 329930 29 100.0 32 ............................. AAGCCGCGTGTTTCCCCGTCTATTGACGTTCA 329869 29 100.0 32 ............................. GTGTCAATGAGAATTTCGGTAGGGCTCTGGGT 329808 29 100.0 32 ............................. ACAGAGGCGCTACCTCAAACCCGAGGAAAGCC 329747 29 100.0 32 ............................. AGGGGGAATATCCCCAACCACCCATCTGCTTA 329686 29 96.6 32 ............................C GAAAGGAAGCGCTAAAATGCCTCGACTTCACC 329625 29 100.0 32 ............................. CGCCGGGGCATTGTTCACTACGGCGGCGGCCT 329564 29 100.0 32 ............................. AGTGTTAATTTTCACGGCGGGTATCCTTCTGC 329503 29 100.0 32 ............................. ACTTTGCCGCTACTCCCGACCGTATCCTAGTC 329442 29 100.0 32 ............................. ATCAAGCAGTTTCACGATTACGGTTACTTGCA 329381 29 100.0 32 ............................. TCAAATATTATCGATTGGTGATGCATCATGGC 329320 29 96.6 32 ............................T TCAGTCATTCACAGGCACCGCTCTACAGGTGA 329259 29 100.0 32 ............................. TACCTGAAAATCCAGAGACAAATCAGGCTCCC 329198 29 100.0 32 ............................. TAATCCTTGTGGCCGTGGATGTAGAAGCTCTT 329137 29 100.0 32 ............................. GGTTACAAGCTGCCCGGTCTGCTGGAAGAATT 329076 29 100.0 32 ............................. CCGGGGCGTTGCTTCCACATAAACATGCGCCA 329015 29 100.0 32 ............................. CCCGGCGCAACCGCCCCGGCTTTCGAGACTAA 328954 29 100.0 32 ............................. ATGCCGCCGCCCGGCGGGTCTATCGGTAATAT 328893 29 100.0 32 ............................. GTGTTACATTTTGGGCAACATCAAGCGTGATA 328832 29 100.0 32 ............................. AGCGCGGGCTATGGGGATGCGAGAGTAGAGGT 328771 29 100.0 32 ............................. AATGTGGAACATGGTAAGCGGGTCGATAAACG 328710 29 100.0 32 ............................. CTGCTCATTGATGAGCGAGGAAAGGAAGCCTG 328649 29 100.0 32 ............................. AGCGGTTTTATCTCGATTAAGCACGACGCGAC 328588 29 100.0 32 ............................. GAGCGCAAAGAAAAGCTCACTCATCGACGGAC 328527 29 96.6 32 ............................T ACGGTGTACGAAGACATGTTCTAACCCTTCTT 328466 29 100.0 32 ............................. CGCGTTAAAATCGCCGTTACGCAAATCGAGTG 328405 29 96.6 32 ............................A GCGCCCGCCTTGTAATCGTCTTTGATGACGAA 328344 29 96.6 32 ...........................T. ACGAGGTACGCGCCCGGCTTCTAGAATTGGGT 328283 29 100.0 32 ............................. AATTTCTACGGCTTCTTCCAGCTGCTCGATAG 328222 29 100.0 32 ............................. TTTCGGCGGTGAAGTATTTCGGCGTGCCGTCA 328161 29 100.0 32 ............................. CCGTCCGCCGGAAAAAAAGCCCTTCGAATCAT 328100 29 100.0 32 ............................. CTGTTCTTTTGATTCTTTTTCCTAGTAGCTTT 328039 29 100.0 32 ............................. CCGCCGCCCGGTTCATCCGCAAGACACAGCAC 327978 29 96.6 32 ............................A GTTCGGCGGCGTGAACGAGCTTCGAGAACTGA 327917 29 100.0 32 ............................. CCCGCGGCACATTAATGCAATTCCTTTTTGAG 327856 29 96.6 32 ............................A AAGCCTGCGCCGGCGGCGGTGTAGCGGTGGTT 327795 29 89.7 32 A..C.......A................. ACACGATGGCGGTTCTTGGTGATCCAGGAAAA 327734 29 96.6 32 ...C......................... TCGAGAGCCGAGTGCGAGCCAAGACCGATAGC 327673 29 100.0 32 ............................. TAGCCTCCTTCTCCGTGGGTCTCTGCAAGGAC 327612 29 100.0 32 ............................. TACCAAGAACGGCATGATTACTATGAACGCGA 327551 29 100.0 32 ............................. AAGGAAGCGGAAGCTGCCGCTGAGGGCGAAGT 327490 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : AGATGCTTTTGTGGGATGAGTACACGGGAGGTACTACGGCACGTGCGAATTTCTCTGGAGACGAGTCATGATTGTGATTGTGTTGTCAGCTTGTCCGGTGAGTCTTCGTGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGCGTGTTTGTGGGGCGTGTGAGCGCCAGGATTCGTGAGAAGTTGTGGGCACGTGTGTTGGAGTCAGGTGGTACTGGTCGTGCGACTATGGTGTTTCCGGCGGATAATGAGCAGCGGCTTGAGTTTCGGGTGAATAATGCGGATTGGGAGCCTGTCGATTTTGAGGGTGTGAAGCTGATTTATCGTCCGGTGGTTCGTAAAACGGTACCTAAGTCAGGGTGGAGTAAGGCGAGTAAGTATAGCCGTGCTCGTCGTGGTTAGGAGTTACTGTTTATCGTGTATTCTGGAGTCAGGCTCTGGCTCCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAACCCCATGTCAGCAAGT # Right flank : AAGGGTGATCGCTGGAACATCGAAGGCGTGAAGTGTCCCCTGCATGAGTGGGGAGCATGTATCGCCTAATCCTCTCAAAATCAGGGTGTTTCAAACATTGAAAGATGTTCAGATGCTGGTGCCATGCTTCTTCTTGGTCAGTAGAATGGTATACACCTTGCTATGTCGCAAGGCACATATCTTGTGAAACAGATAAGGATAAGCTCACCTCGTTTATCTACGACATGCAGTCCTGCATACGGATCCATGTTCTTCCGGGTTTGGTGAAGTAGCTACAGAGCGCGGATTCTGGCGTTGGCTCCTGATGAGACGGACATTCGCAAGGTCGCTAAGGGCCGCGCACTGGTCAGGGGCTGGAGAGACCGGGTGTCCGAAGTTCAGTTTGTGTTCCCGTCGCAGAGGGTTCAGGCGTTGTTGTCGACCGACCCGAACGCGACGAAGAAGAAAGAGGAGATGGAGTCATGATGAAGAAGAACGTAGCGCTGGTTGCTGGCGTGTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //