Array 1 7713-5369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYIO01000018.1 Listeria monocytogenes strain CFSAN049222 CFSAN049222_contig_0000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7712 34 91.7 30 --.....................C............ GAGCGCTGATTGATCCGCCAAGTTTAGGCC 7648 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 7582 36 100.0 30 .................................... GGAAGCCATGCTTACGATTACCAACGCCAT 7516 36 100.0 30 .................................... CGTGGGTCTTTCGTGTCTAAACCTTTGTTT 7450 36 100.0 30 .................................... TGTTTATTGGATTAATGTGCTATGTGGTCA 7384 36 100.0 30 .................................... GGCAGATGAACTGTATATTAAATTTGGGGA 7318 36 100.0 30 .................................... CCTTTCTTCTAATAATCGCTCTCTTGCTTC 7252 36 100.0 30 .................................... ATGGACAAGTTTATAAAAATCTAAATGTAA 7186 36 100.0 30 .................................... TGGAACAATGGTAATGGTACACAAGGTATT 7120 36 100.0 30 .................................... TTCCCTAGTGTAGCCCTTGTTGGAAAGTCA 7054 36 100.0 30 .................................... TTACTTACAGTCAAGACCTAGCATTTATGG 6988 36 100.0 30 .................................... AGCAAATGAACTATATATCAGATTTGGAGA 6922 36 100.0 30 .................................... TAAGCCTTCTTGGGCAGATAAAGATGTAGC 6856 36 100.0 30 .................................... TCTTTTCATTATACTCTATTCCCCTTAATA 6790 36 100.0 30 .................................... AATTGTAGAGGATACGGCATTTAATCCACT 6724 36 100.0 30 .................................... AGATAAAAACAAGGACAAGTAAATTCAGAG 6658 36 100.0 30 .................................... AGCAAAAAGCATTACATTTGATGAAATTCC 6592 36 100.0 30 .................................... CTCCCGTCACCTTCTTCTAACTCCGCTATT 6526 36 100.0 30 .................................... AGTATTGCCATTAATAGCATCAAGTAAAGA 6460 36 100.0 30 .................................... AGCTTATAATTTCCATCAACAAAATATTAG 6394 36 100.0 30 .................................... CTTAGTTTATCAGTTTATCACAATGGAAGA 6328 36 100.0 30 .................................... CGGGTCTTTTTTGACCACTTCGGAGAACAT 6262 36 100.0 30 .................................... TAGATATACTTGTCCTTTTCCTGTTACTTG 6196 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 6130 36 100.0 30 .................................... GCAACAATGCAATGAAACATTAAGAAATGG 6064 36 100.0 30 .................................... TTATTCGCTAATGTTGCAAGATGTGCAGCA 5998 36 100.0 30 .................................... ATTCGTTATTTTATTCGTTAATAATGGTGA 5932 36 100.0 30 .................................... GTTATTGTCAAAACACTTCCCGAATGCGTT 5866 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCCCGAAT 5800 36 100.0 30 .................................... TACATCTCCTTTTCAAATAATATTGTTAGT 5734 36 100.0 30 .................................... CAGTACTTGAGTCAGCCACCTTCCATATAA 5668 36 100.0 30 .................................... TTGCTGTACCCATTTTGGAATGCTTTTACC 5602 36 100.0 30 .................................... GTGCTGCTGTTAGAGAGTCATGTTCACGCA 5536 36 100.0 30 .................................... ATCCCATTTTTCAACATAATAGGTAGCAAC 5470 36 100.0 30 .................................... ATGCAACAAAGGAGTCTTGTATAGTTTGTT 5404 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : AGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 208-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYIO01000001.1 Listeria monocytogenes strain CFSAN049222 CFSAN049222_contig_0000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 207 36 100.0 30 .................................... GAGCGCTGATTGATCCGCCAAGTTTAGGCC 141 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGGAAGCCAGGCTTCCTATTACCAACGCCATGTTTTAGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //