Array 1 643825-644320 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP003923.1 Alkalihalobacillus lehensis G1 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
    643825	    32	 100.0	    34	................................	TCCCGCGCCTGAGTCGCCCCAGGTTCCGGCGGCG  	
    643891	    32	 100.0	    35	................................	TCAAATTCGCCGAGCAGCGGCACCTCGTACGCCTC 	
    643958	    32	 100.0	    36	................................	ATTAGCAATTGAATCGTCAATATCAGGAATGCGCAC	
    644026	    32	 100.0	    34	................................	ATTTGTGCAACCGCATTGTTATACTGTCTGCTCA  	
    644092	    32	  96.9	    34	................A...............	CCTTGAATGATTTTGTCAATGGATTCGCCATATA  	
    644158	    32	 100.0	    34	................................	ATTTTTTGCGCGTCTTTTTTTATAGGAGGAGTGT  	
    644224	    32	 100.0	    33	................................	TTAAAACTTTTCATGGTACTAGTCCCCCTGCTG   	
    644289	    32	  87.5	     0	.......................A...C.T.C	|                                   	
==========	======	======	======	================================	====================================	==================
         8	    32	  98.0	    34	ATCGCACTCTATATGAGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GTATGTAGAAGATGCACGTTTGTCTAACTTAATGAGATAAAGCAAATTATTATTATTATCTAGTGAATGTTATAGAATAAAAGTATTACGTCTTACCGTTATAAAAAATGGTCGCTGTTCATCAATTGCGCGCCATATGACCTTTTTTACAATTAGACGAACTCTATTAAATTTATGCAGGAAGATCATTTATAAGGGGTCAAACAATAGATTTTTATTGTATGAAAAAAGGAAATCGGTGAATTTATTAGAACAAATAATAAAGAACCAATTCCAAGTCACAAGTATAAAGAGACTATCTTCATTTAGGAGAACCTTTTTTGAAAGTAACTTCATAATTGGTGCGAACCCCAAGCGAACATAAAAATCCTGGGTGACCTGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTAGCTAAAAATCTTACCTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT
# Right flank :  CTACAGAAATTGAGGGAATCTGTTTAAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGTTAGTGAAATGTGTGAGTCTGCAGCTTAAGCGCCCTTTAACAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATCGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGTTCGGCCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAGGTAGAGGATAAACGGAACCCGCAGCACCATAATTATTGGAAACGAGAGGCTCTTATCCATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGATGAAAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTAAATGGAGTTCATAAGCAGTTCTCGAAGGAAGACTTTGCTGTTATAGCGAAATCAATCGGATATTTTAACGGAACGTAC

# Questionable array : NO	 Score: 9.16
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATCGCACTCTATATGAGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:59.38%AT]
# 	Reference repeat match prediction:         F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.40,-2.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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