Array 1 36445-34097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYV01000047.1 Propionibacterium freudenreichii strain ITG P1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36444 29 100.0 32 ............................. GCACTGCCGCTGGCCGGCTTCGGGTGGAGTGC 36383 29 100.0 32 ............................. GCGATGGCCTCGGTGCGGGTGGAGAAGGTAGT 36322 29 96.6 32 ............................C CCACTGACACAGCACCTCGGTGCGGTAGTCGG 36261 29 96.6 32 ............................C TTCTCCCCGGCCTGCGATGTGAGCTGGTCATA 36200 29 96.6 32 ............................T TCACCGAAGCGGGCGCCCAGCCTCTGTTGCAG 36139 29 96.6 32 ............................C CTGGCCGAAAGCCGTCGGGTCACGGTCGCTGT 36078 29 96.6 33 ............................T CCAGTTCCACGCGTCCCCAATGCGATCCCGAAC 36016 29 100.0 32 ............................. CCCCAGCGTGCGTCGTCGCACCCTGTCCGAGA 35955 29 96.6 32 ............................C GCGATTCGGGCTCATCGAATCACTGGGACCAC 35894 29 100.0 32 ............................. GCCATCGCAGCCGCATAGCACACGGAAGGGGC 35833 29 96.6 32 ............................T GCTGCAACCGCGCCTGGGCGTCAAACGCACCC 35772 29 100.0 32 ............................. CGCGGCGGCGGGCTGGTGGTCGGCACGCCCAA 35711 29 96.6 32 ............................C ACCTCCCGGTCGGACAGGACTGACCCGTCCAC 35650 29 96.6 32 ............................C TGCGGCGGAGACATGTCGGAAGCAGCCCGCCA 35589 29 96.6 32 ............................C GGCGAGCTCCGCGATGCCTTCCTGTGGCACGA 35528 29 100.0 32 ............................. CAGGTGCAGGGCGGTAATGGTGTGGACACGGA 35467 29 96.6 32 ............................T GCCGTCGTCGCGCGTGGCGAGTCCACCAACAC 35406 29 96.6 32 ............................T CCGATCTGGACGCCTCGCTGAGCCCCGAGGCC 35345 29 96.6 32 ............................C TTGATGAAGGGCTTGCCCCAGGCGTCTCCGCG 35284 29 100.0 32 ............................. AGGTCCGAGTCGCCCAGGAGGTGGCGGCATGA 35223 29 96.6 32 ............................C AACGCCAACAGCACGACGAAGCCGCTCGTTGA 35162 29 100.0 32 ............................. GGCCACAGCATGGCCGAGATCTCGGAGGCGCT 35101 29 100.0 32 ............................. ACCGACGCCAGGACAGGACCGATCGCCGAGAA 35040 29 96.6 32 ............................T TCTCCGTCATCGTTCATCACACGTAACCGATG 34979 29 96.6 32 ............................C GCCGTCATCGCGCGCGGCGAGTCAACCGATAA 34918 29 100.0 32 ............................. ACGTGGCGTCCGTGCGTGTCAATGTAGAAGCT 34857 29 96.6 32 ............................T GCGGCGCTGTTCTGGGTGAGCGGCGAGATGGC 34796 29 96.6 32 ............................T ATAGGCCTCCGGGCCGGCCTCGGCCCACAGAA 34735 29 100.0 32 ............................. ATTTCAGCTGGCCGCCGCGCCACCTCGGATGC 34674 29 100.0 32 ............................. ACGACGAGCGACACCATCACCATCACCCGCGA 34613 29 96.6 32 ............................C ATTTCCGGATCGTCCATCCGGTGCCCGAAAAG 34552 29 100.0 32 ............................. TCGTTCGACCTGGCCGGTCTGACGCTCAAGAA 34491 29 93.1 32 .................A..........C GGGGCGAAGGACCGCGGAGATATCTCCGGGCT 34430 29 100.0 32 ............................. GGCCCCGAGGGGGCGCCGCTCCAGGCAGCCGA 34369 29 100.0 32 ............................. TTCGGTGCCGACGCTGCCGATGTGCCACACAT 34308 29 96.6 32 ............................C TCCCGCACGTAGCCGCCAGCCACAAGGCCGGT 34247 29 100.0 32 ............................. CCAAGGTTGCGCAGGCGACCGCGCTCGTCCCC 34186 29 96.6 32 ............................C GCTTGATTCAGGTGGGCGCGAATGTCGGGGAT 34125 29 82.8 0 ........................GGGTT | ========== ====== ====== ====== ============================= ================================= ================== 39 29 97.6 32 GTTCTCCCCGCATACGCGGGGGTGATCCG # Left flank : CCGCATACGCGGGGGTGATCCTCATTTGTGTTCTCCTTGAATTTTGGTGTGGCAGTTCTCCCCGCATACGCGGGGGTGATCCGCTGGGCGGCACGCTGTCTGGCTGGGGGAGCTCGTTCTCCCCGCATACGCGGGGGTGATCCGCTGTCGGGGTAGGGGGTCCAGACGGCACCGACTGTTCTCCCCGCATACGCGGGGGTGATCCTCCGTCTGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCG # Right flank : ACCCTGTTTTTTCGGACACCTGATGTGGCATGGCCGGTGGGTCGTGCGGGAAGGTGTTGTCATGGGTGTGGATCCGGAGCAGGTGCCGCGGAGGCGGCGGAAGTTCACTGCGGAGTACCGCCACGAGGCCGCGAGGCTGGTGCTGACGTCTGGTCGCACGATCGCGGACGTCGCGAAGGAATTGGGACTCGGTGAGCAGTTGCTGGGCAAATGGGTGCGTGCGCAGAAAGAGACAGCTGCTGGTGATTTGTTGAGCGATGACGAGCGGGCCGAGCTGAAACGGCTCCGGCGTGAGAACTCGCAGCTGCGGATGGACAACGAGTTCCTGGAAAAAGCGGCGGCCTTCTTCGCGTCGAAGCGTCGGTGAACGAGAAATACTCACTGATGCGCGCGGAGAAGGCACATTTCAGCGTCGTGCGAATGGCCCGGCTGCTGCATGTCTCACGGTCCGGGTATTACACGTGGGTGAAGACGAGCGAACACCCTGCCGCATCGCCTCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40373-36739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYV01000047.1 Propionibacterium freudenreichii strain ITG P1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40372 29 96.6 32 ............................T CGTGGGGCGCGTTTCGAAGCGGGTGCCGGCCG 40311 29 100.0 32 ............................. AAAGTCCACCGGCGAATCGACAGCGTTCGAGA 40250 29 96.6 32 ............................T GCTTAGGCGTGTAATTCTTGTCAATAATATGA 40189 29 96.6 32 ............................T GGGCCAGCAGAACGCTATCAGCACAGGGCTGG 40128 29 96.6 32 ............................T GAGGCGCATAACCAATTCGGGGGTCAGGAACA 40067 29 100.0 32 ............................. CGCGGCAACCCCGACGCCGGTGCACCACTCGG 40006 29 96.6 33 ............................T CTGGGCCGAATCTGTGCCACTCGACCCGTAAGA 39944 29 96.6 32 ............................T GGCCGTGGGGCCGCCCGCAATGCCGCCCGCGA 39883 29 96.6 32 ............................G CACTACGGACGTGTCGGGCGACACAGGAACCA 39822 29 100.0 32 ............................. CGAAGCGTGTTTGCGATACGGCTTTAGCGAAA 39761 29 100.0 32 ............................. ACCTTCTCCAAGGACGGCATCACTCTGGACCA 39700 29 100.0 32 ............................. GGCCACTTCGCCACTGATCGCAGCATCTGAGG 39639 29 100.0 33 ............................. AGATCCAGATCCAGGCGGCCGATAGTGAGCTCA 39577 29 96.6 32 ............................G ACGATCTCCGCGTCAGGGAGCACCTCCCGGAT 39516 29 100.0 32 ............................. TGCGCGTGTGGGACGCGGAAGTGGCCGGCTCT 39455 29 100.0 32 ............................. GCATCCGGCATTCTCGATGGGATCATCCAGGT 39394 29 96.6 32 ............................G CAGTTCCGCCGCTGGGTTACCCACGAGGTGAT 39333 29 100.0 32 ............................. AACTTCCCCGCGGTCATGTCCCAGGCGGGTGA 39272 29 96.6 32 ............................T GCGGAGTTGTGAGCAACCTTAATGACGTCCGG 39211 29 96.6 32 ............................G ATCCAGATCGCCGGGACGATCGACGACGTGGT 39150 29 96.6 32 ............................G CCCAGCGCATCGACCTGGCCCGCACCGGCTGG 39089 29 96.6 32 ............................T GAATCGAAGACACGCCGAACGCAACCAGGGAC 39028 29 96.6 32 ............................G GTCTACGCCGCCGAGCACGGAACCACGCTAGG 38967 29 100.0 32 ............................. TCACTGGCGCGCTTGTCGGCGCTGCGGCGAGC 38906 29 96.6 32 ............................G GCCGACCTATGGCAGGCCTATGCATTGGGCAT 38845 29 96.6 32 ............................T CCGGCGTCGACAAGACGCTTGATGATCCCGTC 38784 29 100.0 32 ............................. GACAGAGGAATCCGTGTCGACACGACGCTGGC 38723 29 96.6 32 ............................G AAGCCCGCCCCGCCAAGAATCGTGATCCAGAT 38662 29 100.0 32 ............................. ACCTGGACCGAACGCGCCTTGTGCCAGGCCCC 38601 29 96.6 32 ............................G ACCTTCACCGACCTGAGGAGACGAAATGACCA 38540 29 96.6 32 ............................T CTGCATCCTCGGCAAGGAGCCAGAAGGCGACG 38479 29 96.6 32 ............................T GCTGCGGACCTACGCTCAAGCTCTGGATCACT 38418 29 100.0 32 ............................. GGCCCTGTTTCGGGTGTTGCGGGAAAGGAACT 38357 29 96.6 32 ............................G ACCACCGCCACAAGAAAGAGAACGCATCATGA 38296 29 96.6 33 ............................G TGCGGCTGCCCGCCTCGCTCAACAGTGAGCTCG 38234 29 96.6 32 ............................T GCGAGAGTCCAAATCACTTGCGTCTCCTTGTC 38173 29 100.0 32 ............................. GTCGCCACGATTGCGCGCATCGAGCAGGGCAA 38112 29 96.6 33 ............................G GGCTGATGCTGCGGACCGTCGCCGACACCCCGA 38050 29 100.0 32 ............................. AGACCGACCACCAGGCCGGCCACGAAAAGGAA 37989 29 96.6 32 ............................G CCATGTCCCGCCCTCCACACGCTCGCTGGGCT 37928 29 100.0 32 ............................. TCGTCGCCGCCGCAACCACCGCACCAGCAAGA 37867 29 100.0 32 ............................. ACCGACGCCAGGGTCGAGACGATCGACGACAG 37806 29 96.6 32 ............................G GGCTGGTCGGTGCCGATGATCGAGCGGACTGC 37745 29 96.6 32 ............................G TTGCTGACGACGGGTGCCTGGTCGGTGCCGGT 37684 29 100.0 32 ............................. AGTCCGGGCGCAGCCCGTGAACAGCCAGAGCC 37623 29 96.6 32 ............................G CAACGGCGACATCCCCGACCCTGAGCACTGGA 37562 29 100.0 32 ............................. ACCGACGCCTGCTCCTCAAAATCGCCCTGAAG 37501 29 96.6 32 ............................G CTGCGCCACGGCCTCGAGGGCCTGCAGCGCCA 37440 29 96.6 32 ............................T GGGACGCACGCCGGTGGCATGCAGCGTCGATC 37379 29 96.6 32 ............................T CATGGCATCGCGCTGCCGCCTGACCCAAGAAG 37318 29 96.6 32 ............................G TGATCTGATGCGAAACTACGAGCTGGGTGGGC 37257 29 100.0 32 ............................. CGGCAGTGGTGCTGGATGTGGCGGCAGGCAGG 37196 29 100.0 33 ............................. TTCACCCGAGACCACGGACCCCGAGCAATGTCA 37134 29 100.0 32 ............................. GACAAGATCACGATCCGGATCCGGGAGCGCCT 37073 29 96.6 32 ............................G AGAATGCGAAGGTGCTCGCGTCGGTGGCGCAG 37012 29 100.0 32 ............................. GCTTCCACCCGGGACACACCCAAAGTCGGGTC 36951 29 96.6 32 ............................T CATTTGTGTTCTCCTTGAATTTTGGTGTGGCA 36890 29 96.6 32 ............................G CTGGGCGGCACGCTGTCTGGCTGGGGGAGCTC 36829 29 96.6 33 ............................G CTGTCGGGGTAGGGGGTCCAGACGGCACCGACT 36767 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 60 29 97.9 32 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : GGCTCACCGATGACGACTCCGACCATGAGTGGGACATTGTCGAGCTTTGGGATGACAAGGACGGGGTCGTGCCGGGTGGCCGGTCATGGAGTGAACAGCCATGATGGTGTTGGTGCTCACTGCCTGCCCGGCCGGTTTGCGCGGGTTCGTGACGCGGTGGCTGCTGGAGATCAGCCCGGGAGTTTTTGTGGGCAAAGTCTCTGCGCGGGTGCGTGAAGCCATTTGGGCGCGGGTTGAGGACCTCTGCCAGGACGGACGAGCAATTCTGGTGCACACGGCGCGGAACGAGCAGGGCTTTGACTTCAAAGTACATAGGCACGATTGGGAAGTTGTTGATCTGGAGGGCCTCAAACTGATGCGTCGCCCCAGAACCCCGGATCGTGCGTCCAGTGGCATGCGCTCCGGATGGAGCAACGCTGCCAAGCGACGACGGTGGGGTCGCTGACTCGGAACGTCCTCGTATCGGCCTTGAGCGCCAGTAACATGCGTAGTCAGGAAGT # Right flank : CCGTCTGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGGTTCTCCCCGCATACGCGGGGGTGATCCGGCACTGCCGCTGGCCGGCTTCGGGTGGAGTGCGTTCTCCCCGCATACGCGGGGGTGATCCGGCGATGGCCTCGGTGCGGGTGGAGAAGGTAGTGTTCTCCCCGCATACGCGGGGGTGATCCCCCACTGACACAGCACCTCGGTGCGGTAGTCGGGTTCTCCCCGCATACGCGGGGGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //