Array 1 10-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHH01000030.1 Lactobacillus helveticus strain IMAU10149 Scaffold30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 10 32 100.0 34 ................................ TTTTTTTACCTCCCTTAATCCTTACAATTTTTAT 76 32 100.0 34 ................................ TTGCATGTTATGTTTGATCATAAACAATGCAATG 142 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 208 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : ACATGCCACG # Right flank : TTTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7073-7223 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHH01000061.1 Lactobacillus helveticus strain IMAU10149 Scaffold61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7073 29 96.6 32 ............................C ATCAGCGGCTTAACTGACAATGCTGACATTTT 7134 29 100.0 32 ............................. AGCCGACAACGCCGAAGCCCCAGGTTCCTAAT 7195 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTATTCTCCACGTATGTGGAGGTGATCCA # Left flank : AGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATTTGATTGAGCATTGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TAAAAAAACGAGACAATACATATTATGTGTCTCCTTTAGAACACGATTTACTGATAAATGATGATGCAGCTCATGCTTTAAAAGAATTACCGGCAAATTCAGTTGATTTGATATTTACGTCACCACCTTATTACAATGCTAAAACAGAATATAGTGAGTTCTTAACATATGATAAATATTTGGCTTTTATCAAAGAAATTGTTGAAGAAGCAACCAGAGTTTTAATACCAGGAAAATTTTTTGTAATGGATTCATCTCCTGTATTAATACCTCGAATTGATAGAAATCATTCATCTACGAGATTAGCTGTACCATATGATATTCATAAAATATGATGTTCATAAAATCTTTATGGATTTGGGCTATGAATTTATTGACGACATATATTGGGTTAAACCAGAGGGTGCTGGCTGGTCAGCTGGAAGAGGCAGAAGGTTTGCAGCTGATCGTCATCCTATGCAATATAAAGCTGTTCCAGTTACTGAAAATATTATGGTATA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6636-7529 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHH01000079.1 Lactobacillus helveticus strain IMAU10149 Scaffold79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6636 36 100.0 30 .................................... CAAAGCTTTCAGTCGCCATGCTCATTGCAG 6702 36 100.0 30 .................................... GCACACGCTACACAAGCCGTAGCAGACACC 6768 36 100.0 30 .................................... GACGAGGATGGAAACCCAACCGAGTTCGCA 6834 36 100.0 30 .................................... TGGAATATGGACAGCGGAGACTTTATCAAG 6900 36 100.0 30 .................................... AGAACTTACAAAAAACATTGTTAGCAAAGA 6966 36 100.0 30 .................................... TCCAAAACACATAAGCAGACTATTGCACCC 7032 36 100.0 30 .................................... CAAGACCTAGAATGATATGTTGTGGGTGTG 7098 36 100.0 30 .................................... TGCTTATTACAGTATGGTGCCAGATGGCGC 7164 36 100.0 30 .................................... TGGCTTCCTTACCGGTAAACCCCATAGCCC 7230 36 100.0 30 .................................... TAGAGTTCGCGAAAAGTTCTTGCAAGCCAA 7296 36 100.0 30 .................................... TTTCCTGAATAAAAATAAACTAAGAGTATA 7362 36 100.0 30 .................................... ATGACGCAATATTATCAGTAACTAATCCTA 7428 36 100.0 30 .................................... TAGTTCTGTGTTGTGGAAGTTTGCCAATTA 7494 36 91.7 0 ..............................C.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.4 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : ACTAAAAATATAATTGAAAAATATATGCCGCATATTTTGAAAAGCTATATTCAGAAGTTAGATGAAGAAAATCGAAATAAGATATTTTCCGCGTATCATAATTTAGAGTCTTTATTACAGGATTCTTTACTGTTAGAAGATCTACCGTTAGAAATTGATTTTAATGAAGATTTGAAAAAGCTACTAAAAGCAGAAAACTTACATTTAGATGTTAAATTATTAAAGGAACCATATGTTATAATTGAATCGATTCTAAAGATTCATCAGATGTGTAAGATAGATTCAGTTCCTGTGATATGTAATGTCGCTAATTACTTAAATTCACAGCAATTACAAGAACTATCAAACTTAGTAAAACAAATGAATATGAAGCTCGTTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAAAATGCTGAATTCTTCTATATTGACGAGGACCTTGTTGATTGGTATTGATCATCAGATGAGAAAAAGATTATAAAAAATCG # Right flank : CACAAAATAAATTAGCTATTTACTGAGACTATATGTTCACAGACTTGTGTGATTAAAAAATTGGTAGGCTCTATTTCAGAATGATTATGTAGTAATACGTAATCATTCTTTTGGCTCTTTGTCAAATCCTGTTGATAGAGAGTAAATGAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 46-380 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHH01000120.1 Lactobacillus helveticus strain IMAU10149 Scaffold120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46 29 96.6 32 ............................T TAAAGAACTTCGCACTGATTTTAGGTTGATAA 107 29 100.0 33 ............................. TAGGATTATCTAGTCTAAATAACATGAAAAAAG 169 29 100.0 32 ............................. ATATTTAACAGGGCATGAGGCAGGAACTAGTG 230 29 100.0 32 ............................. CTAACACTTTATATTGTGCCTCGGGGTCGGTG 291 29 96.6 32 ............................T TTGTGCAACAAGGCGTAGAAATGTTTGAAAAT 352 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 32 GTATTCCCCACGTATGTGGGGGTGATCCC # Left flank : AAAGCAATGAAATATAAAGGGCTCCAACTTGGAGCCTTTTTATGTG # Right flank : CACCAAGCACAAAACCATTAGCATTCAGGAAAGCACGGCAATTCTTAGTAGGAATATAAACATTGCGGAGAACAGAGCTACTGCTGGGATGTAGGGGTTTCTTCTTTTTTTGAAGCAGACCAGAATATTGGCACCATTTTAGTAAAATGGGATGGAAAAACCTGGTTGGATAGTGTTGAACAATTGAATACAGCATATCTAACTGGCTGTCATTAACAAAATCAAAATTGCATATTAGCTGTAATAACTGCATATCATTTTCTGACAAAGACAAAGAGCCTTTAAATCGTTTAGGACTATAAACAAACATAAAATACCTCCTAAATTAGGATTGAAATATGTATAAGAGTAGCACTTCTAATTCAGAACTTGGATAAAACTCTGAAAGCTAGAATATGCAAGGCTCTAGACGATTTTAAATACCGGAAAATGTGTCTCTACAGCACTTCGATTTTGAAACTTATTTTGGAACTTAAAAAAGGAGAAAAAATGGATAATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1110-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHH01000012.1 Lactobacillus helveticus strain IMAU10149 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1109 32 100.0 34 ................................ ACCAAACCGCAGCTCACTGTTACATTTCTAAGAT 1043 32 100.0 35 ................................ CTTGTATTACAAGCAGACCAACCTGCTGTCTACAA 976 32 100.0 35 ................................ ATTATTAAGTGGATTACCGCTGCTGTCATTCATGC 909 32 100.0 35 ................................ TGTTCGGCTCTATCTTGATGTCAAAGATCCTAACG 842 32 100.0 34 ................................ AAAGACATAATTTGAAAGTCGTCTTTTTTGGTTA 776 32 100.0 35 ................................ AAATGCACCACCACCAATATTAGTTGGAGTAACTG 709 32 100.0 35 ................................ TATCACAGAAAGCAACACTGCTACTTGGCATTCAA 642 32 100.0 33 ................................ TTTGACCGACTGCATACGCATCGGCTGCCGAAT 577 32 100.0 34 ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT C [576] 510 32 100.0 34 ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT 444 32 100.0 34 ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 378 32 100.0 34 ................................ TTGGTTACGACTCTGACAAAAGCAAGAAATCAGA 312 32 100.0 34 ................................ CTTTCGCTTTGCAACCAGGCATGGAGGTTTTTTA 246 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 179 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 112 32 100.0 36 ................................ TTACAGATTCCTGCTTCGACTGAAAGTGTTGCTTTC 44 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGTAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAACGGAAGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //