Array 1 3175158-3177807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066855.1 Klebsiella pneumoniae strain 1970_kpn chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3175158 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 3175219 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 3175280 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 3175341 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 3175403 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 3175464 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 3175525 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 3175586 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 3175647 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 3175708 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 3175769 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 3175830 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 3175891 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 3175952 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 3176013 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 3176074 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 3176135 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 3176196 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 3176257 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 3176318 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 3176379 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 3176440 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 3176501 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 3176562 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 3176623 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 3176684 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 3176745 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 3176806 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 3176867 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 3176928 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 3176989 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 3177050 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 3177111 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 3177172 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 3177233 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 3177294 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 3177355 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 3177416 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 3177477 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 3177538 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 3177599 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3177660 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3177721 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 3177779 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32546-33548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066856.1 Klebsiella pneumoniae strain 1970_kpn plasmid phvKpST147_NDM-29, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32546 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 32607 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 32668 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 32729 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 32790 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 32851 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 32912 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 32973 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 33034 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 33095 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 33156 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 33217 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 33278 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 33338 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 33399 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 33460 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 33521 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //