Array 1 114673-116286 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYS01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PL1264 NODE_1_length_381675_cov_84.234689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114673 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 114734 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 114795 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 114856 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 114917 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 114978 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 115039 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 115100 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 115161 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 115222 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 115283 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 115344 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 115405 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 115466 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 115527 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 115588 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 115649 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 115710 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 115771 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 115832 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 115893 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 115954 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 116015 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 116076 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 116137 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 116198 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 116259 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132419-133058 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYS01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PL1264 NODE_1_length_381675_cov_84.234689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132419 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 132480 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 132541 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 132602 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 132663 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 132724 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 132785 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 132846 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 132907 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 132968 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 133029 29 96.6 0 A............................ | A [133055] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //