Array 1 140539-141886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSD010000001.1 Pseudomonas aeruginosa strain PA762 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 140539 28 100.0 32 ............................ AACAATGGAAGACTTGCAGTCAGCATTCAGCA 140599 28 100.0 32 ............................ TTCACCAAGGAGTTGTACGCATTCCCCGACAA 140659 28 100.0 32 ............................ TGAATCTCAGACGCCTTCACCATGCACGACAA 140719 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 140779 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 140839 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 140899 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 140959 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 141019 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 141079 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 141139 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 141199 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 141259 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 141319 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 141379 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 141439 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 141499 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 141559 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCTG 141619 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 141679 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 141739 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 141799 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 141859 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 152600-150411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSD010000001.1 Pseudomonas aeruginosa strain PA762 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152599 28 100.0 32 ............................ TGCAAGACCTGCTAGCAGAAAGAGTCACCCTT 152539 28 100.0 33 ............................ GAGGTCGACGGCAAAGAGTGCCCGATGACTCAG 152478 28 100.0 32 ............................ TGTTCCAACTCGATGCTGCGTGCGGTGCTCCG 152418 28 100.0 32 ............................ TGTTCGAGGAATTCATCGAGCACCACAAGGAG 152358 28 100.0 32 ............................ GGGAGGGAAGGGCAGGCAGAAACGAAAAGCCC 152298 28 100.0 32 ............................ TCGAGCTTGTCGAATCCCCTCAAAAACTCCCC 152238 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 152178 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 152118 28 100.0 32 ............................ TCGATGCCCCGACGAACCGGGGCGGGGTGGTT 152058 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 151998 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 151938 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 151878 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 151818 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 151758 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 151698 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 151638 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 151578 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 151518 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 151458 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 151398 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 151338 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 151278 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 151218 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 151158 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 151098 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 151038 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 150978 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 150918 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 150858 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 150798 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 150738 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 150678 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 150618 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 150558 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 150498 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 150438 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //