Array 1 23392-22895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZA01000029.1 Neisseria meningitidis strain NM2187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23391 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 23325 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23259 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23193 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23127 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATAACATTT 23062 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 22996 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 22930 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 24159-24458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZA01000029.1 Neisseria meningitidis strain NM2187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24159 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24225 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24291 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 24357 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 24423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTTCTCCTAGTGAAGTTAATCACACAGGCGAGAGCCGAACAAAAATCCCCGTTGCAGCGGGGATTTTTGCTGTTCCCTGTTTGATGATTAAACTAAAATCTTGCAAAATGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGACATTTAGGGGATTTCTCATGAGCACCTTCTTTCAACAAACCGCCCAAGCCATGATTGCCAGACACATCGACCGTTTCCCGCTATTGAAGTTGGACCAGGTGATTGATTGGCAACCGATCGAACAATACCTGAACCGTCAAAGAACCCGTTACCTTCGAGACCACCGCGGCCGTCCCGCCTACCCGCTGTTGTCCATGTTCAAAGCCGTCCTGCTCGGACAATGGCACAGCCTCTCCGATCCCGAACTCGAACACAGCCTCATCACCCGCATCGATTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACN # Right flank : TNNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTGGCTGTGTATGAATACCCGGTTGGTTTTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTGGACATCTCAAAGGACACCATAGACGCAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGCAAAATCTTATGTATGATAATTGGCAGGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTAACATCGTGTATTGGGTTATTATTTTAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGTTTTGTGGCAATGGTTTCCGCCGTGGGTAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTAAAAAAGGCAGAACAATTACAAAAAGAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTAATTACTCGGCGTATGTATTTCTATTTGGATTGTAGCACTGCGAAATGAGAAAGGGAGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 25161-24465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZA01000029.1 Neisseria meningitidis strain NM2187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25160 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25094 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 25028 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24962 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 24896 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 24830 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 24764 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 24698 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 24632 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 24566 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 24500 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCCCTTTCTCATTTCGCAGTGCTACAATCCAAATAGAAATACATACGCCGAGTAATT # Right flank : NNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAAAATCGAAATAACAAAATGGTTGTTATTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGCAAAATCTTATGTATGATAATTGGCAGGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACCGCATTTGCAAAATTTAGTGGGTTGCCGTTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAAGAAAGCGAGCTTGTAAAAAGGCAGAAGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACNGTTGCGGTAGCGGCATAAGGTGCTGTAATCGGGGATGCTCAGTTCGTCAAAACGGCAAAACAGGTTGAAATCGATGCGGGTGATGAGGCTGTGTTCGAGTTCGGGATCGGAGAGGCTGTGCCATTGTCCGAGCAGGACGGCTTTGAACATGGACAACAGCGGGTAGGCGGGACGGCCGCGGTGGTCTCGAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //