Array 1 18091-17863 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEBG01000003.1 Bacillus safensis strain DE0299 NODE_3_length_301879_cov_59.795160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18090 32 100.0 33 ................................ TCTAAGTATCTTATGTTTTCCCTGCATTTATCA 18025 32 100.0 33 ................................ GCGCTGGCAGTGTATACGGAAACGTCGGATGAA 17960 32 96.9 34 ............A................... ATCATATCTTCAACCGAATTACGCAGCGTCATCA 17894 32 68.8 0 A.....A...CCA.......A.A...CAC... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 91.4 34 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GTGGATTGAAATTGTTTGGCAGCAGGTCACATGAAATGTAGTATGTGTCGCACTCTACATGAGTGCGTGGATTGAAATTTAAATAGTTCAGTACCTTTTTTTCGGTTAGTTGTCGCACTCTACATGAGTGCGTGGGTTGAAATCTGAAGCGTCGCTGACTTTTTTGGTCAAAATAGGTCACACTCTACGTGAGTGGGTGGATTAATAATTGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCAAATTATATAAAGTCAAATACCTATCCATTTCAAAATCTACACAAATGAATAATCAAAATAATGTACTTTCCACCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGATAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCCGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGG # Questionable array : NO Score: 8.43 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18874-18382 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEBG01000003.1 Bacillus safensis strain DE0299 NODE_3_length_301879_cov_59.795160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18873 32 100.0 33 ................................ TGTACAAATAACAATTAAGCGGAAGAATAAAGG 18808 32 93.8 34 .........C...........C.......... TTTTACCATCCATCTTGTAACCTGAAAGCCATTC 18742 32 96.9 33 .........C...................... GTTTTCTGCCGGAACGTTATAGCAACGAAAGGC 18677 32 100.0 35 ................................ TTGTCGCACTTCAGTTAGCTGAGTACTTTGATACA 18610 32 96.9 34 ...............T................ TGTTTGGCAGCAGGTCACATGAAATGTAGTATGT 18544 32 100.0 33 ................................ TTAAATAGTTCAGTACCTTTTTTTCGGTTAGTT 18479 32 96.9 33 ........................G....... CTGAAGCGTCGCTGACTTTTTTGGTCAAAATAG 18414 32 87.5 0 ...A........G......G.......A.... | T [18384] ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCTGACTATAACAGCGTCAAGCTAGACAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCGACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCGACCAGAAGAAGCGGAATGGCTCGAGCTCGCCAAAACCATCTTACTAGGAGCTTTAGAATACGAAGGAATCGGTGCTAAAACAAATGCAGGCTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTCAGGTGAACATAAAATCCCTAGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATGTGAGTGCGTGGATTGAAATTCTAAGTATCTTATGTTTTCCCTGCATTTATCAGTCGCACTCTATGTGAGTGCGTGGATTGAAATGCGCTGGCAGTGTATACGGAAACGTCGGATGAAGTCGCACTCTATATGAGTGCGTGGATTGAAATATCATATCTTCAACCGAATTACGCAGCGTCATCAATCGCAATCTCCA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27484-27121 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEBG01000003.1 Bacillus safensis strain DE0299 NODE_3_length_301879_cov_59.795160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27483 32 100.0 33 ................................ ACCAGCTTTTTTGGCGCCCTTTTTAAAGAAATC 27418 32 100.0 34 ................................ TCGGAAACATTATATAAGACCGCATCTACAGCCT 27352 32 100.0 34 ................................ TGCGATATGCCGCTTGTCCTAGCTGAATGTATTT 27286 32 96.9 35 ...........T.................... AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 27219 32 93.8 33 ...................T........G... ACAGTAGCCGTATTAATTACAGGTCTTATATTT AT [27207] 27152 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGGAGACAAAATCACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTATCAAGAGGGGCCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTAAGGGTTTTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCTATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAAATTGGTAAAAATGTATATTTCGTGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTGAGGGCTGCACAATTTGCCAGCGAGAAAGTCGTCGCACTCTACATGAGTGCGTGGATTGAAATCCTCTTGGCTTGTATATGATCTCTAACCTAGAATGGTCGCACTCTACATGAGTGCATGG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //