Array 1 67085-66687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000004.1 Acrocarpospora sp. H8750 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 67084 30 96.7 31 .............................T CTCCCCAAGACATCCGACGTAGATATTCCTG 67023 30 96.7 32 .............................G GTGGCCTCGATATAGACGCCGGACCGGAAGCC 66961 30 100.0 31 .............................. ACGATGACGAGATCGAGATCTCCGACGAGGT 66900 30 100.0 31 .............................. TGGGAGAGGTAAGAGACCTGCTGGACAAGCT C [66895] 66838 30 100.0 31 .............................. GGAACAACACCAGGGTGTCGGACAGGGTGAG 66777 30 93.3 31 .........................C...G GCTGGCGGTTTCCGGCCCAGCCGGACGGTGG 66716 30 83.3 0 .....G.G.........C.........TG. | ========== ====== ====== ====== ============================== ================================ ================== 7 30 95.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GGAACGGGTGGGAGCAGAGAGTGGCCCCTGTTCCCGCAGGGGCCACTCACTTTCCGGCGCATGCCGTAAGTAACCGACGCGTTGGTGTATCGAGTCGGTAGTCATCCCCGACTTGCCGGTGAGGCGCCGGGGACTTCGCGCTGGCGAGCCCGCCTGCGAGGGGACATCTCCGGATTGCTGCTGGACGGAGAGTCGGGCCCGTGCCTCGGTAAAGGCAAAGTGATCGTATCGCATCCCGGTCGGCACTGGTGTAGTCCTACTTTTGTTGGTTCAAAGCTGGCGGCCCCGCATGCGAGTTCGCTGCTGTGTTGGCTCGCGGATGCTTTGAGTCCAAGGACCGGCTTTGCTGATCGCCTACGGATGCGGCAAGGGTTTGATGCAGATACCGTTCACGCGATGAAGGTTCCGCATGAACCAGCAAGAGGCCGTCCGAAATGTCCGATCCTTCAAAAGTACTCGAAATCGCCGCCTTCACCCGAGAACAATGCAGGTCAGAAAGG # Right flank : GAGCGATCACGTGGAAGTCTGAATCGGCGGACACGAGTGTCGCGGCCGATGGACAGCGCTTCCCTGCGAGGTGATGGGTACTGGTTATTCAAGGCTGGAGCCACTGTGCCTGTGCAGGCTGAGTCGTCAGGCGATCGCGGCGGATCTCAGCAAGCCGTGTCCATGAACCTGGGACAGAAGCTCCCGCTTACCTGCCTCGACTGCTTCTTCTCCGCCAGCCCGCTCGACGTGCTCGGCTCGGATGTCCCTCCAGCGCACATGTCCGCTCATCTGTCACCCTCCCGCTGAGCTCGTTCCGTCAAGTAGACCTCATGCCGGGCTGGTCAGCGGACGGCCAGGGCGCCGATTTTCTCGAAGATGCGGAAGACCTCGGCCTTGGCCAGGGCCACGTCTGGGTCGGAGGAGTCTCGGGGGAAGGGGAGGTTCATTGGGATGTCTTCGGTGAGGTGGCCGCCCTTGGCGAAGACGAGGATGCGGTTGGAGAGTTCGACGGCCTCGCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75541-75936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000004.1 Acrocarpospora sp. H8750 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 75541 30 100.0 31 .............................. GCGGTCTGTGATGATCCCAATTCGCGGGGGT 75602 30 96.7 31 .............................T GGCGTGTCTGGCAGAGTGATGGCGGCAGGGT 75663 30 100.0 31 .............................. CGGCGTCCCAGTCTTTCTGCTTGATGATCTG 75724 30 96.7 31 .............................C TCTCGCCGAGCTCCGCGCCCGCTGGGCATCC 75785 30 96.7 31 ..........T................... CCGACGGCACCACCACCTGGAACATGGGGCG 75846 30 93.3 31 ............................GT CCTCATCACGGCCGCCCAGCAGGGCCATCCG 75907 30 93.3 0 ............G....A............ | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCCGCCGAGCAGATCGAATGGCTCATCGGCAAGGGCGAACAACACGGCTTCGTCATCCCGGCCAGCCGACAGGGCACGCCCGACGTGGCCACAAGCCCGAGCCCTAAACTGGTCGGAAAGAGACGAGAGCCACGTCATATCACCATCGACCCCGTCCGCTACGACGGCCACCTGGTGATCACTGACCCTGCCGCCTTCACATCATCACTGATCAACGGAATCGGACGCGCCAAATCCTACGGCTGCGGTCTATTCAGCCTCGCACCCCCGCGCGGCACCCCTTCCCTCTGATTGGAGGGGACACGCGATCAGGCTGAACAATAGCTTCAATCGATCCTGAATCTCATTTGGGTCATCCATGCATGAGGAGTCCTGCCGAAGGTACCGTTCACACGACGCGGGGTTCGGAACGAACCAGCCAGAGGCCGCCCGAAATGTCCAACTCTTCAAAGCTACTCAAAATCGCCACCTTCACCCGAGAACAATGCAGGTCAGGCAGT # Right flank : GTTGGCGCTGACTCTGCCTCGCTCAGTCTGCGCCGACGCCAGCTTCTAAACCCCGATCCCGACCATCGGAAAGGGACTCATCCCACAGCTCCGGCGACGGCCATTCATCGGCGGGCAGGACGCCGATCCCTCTGTTCCCGTACGACCTCGCCCAGCCCGCCTCCACGAGCAGCCGCGCCGCCGCCCGCACCGTAAGCCCTGACACCCCGTACCGGCGGCCGAGCGCATGCGGACTGGGAATCACCCGACCCGGCGCGATCCACCCCTGACCGATCTCCCACGCCAGATCGCAGGCGATCACCCGATACACCGGCATCGCCTCCCGCGTGGCCGGGCTTCCCCACCCGGCGAAGTTCCGCCGCCCCGCCACCCGCACCGCCAGCCCGCGCTCCCGCAGCTCCCGATGAACCCTGCGCGCCAGGTTCGGCGAGATCCCGTACTCCCGTGACAAGACGACCTCACCCGGGACCGGATCCCCCGCGCGTAGTTCCCGCCGCCTC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 79874-79661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000004.1 Acrocarpospora sp. H8750 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 79873 30 100.0 31 .............................. CGGCCGTGGACGCGATCTCGGCGCTGGTGAA 79812 30 96.7 31 ............................G. CCTTCTCCAGCACAGGGAGATCACCAGGCAG 79751 30 96.7 31 .............................A GCCAGGCCGTGATCTGGGTGAGGTTCGGGCC 79690 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCCGCGCTGGGAAGTGGATCTTTTTCGTGGGGATTCGACGAGGTTTGACTGTCGGCGGACACGTGGCTTCTTCTTGGAGGCTGCCTTGAATCGCCCCGCCAGCAGCCACCCAGTCATCCGTCGATCGCCCGCGCCCCGGTGCCGCCGTCCTTCGGCACCTGCCCGCCGCGTGCGTTTCACATAATGTGCCGCCGTGTGGTGTCCGCACCCGGGCCAGCACGACCGCAGCACGATGACGCCCTGTGAGGTCGTGTATCTCAAGTATTCCTTGATCTCCCCGCAGTTCTTCACCCCCTCGGCTCTTGCCGACCGGGATTGATCGCGATCAAATGGGGATATCTGGCCGTCTGCGGGGAACCTGCTGGCCGTCGGTGGAGTCGTACCTGGCCGCCGTCACCTGTGATCAACCAGATACTCAAGCCGCGCCCGCGTCCGAAATGTCCACTTCTCAGTTAATAGATTTCCGCTTCCTCGATGCCTAGCTTCCCACGTCAGCGAGT # Right flank : CGCTCTATGCGGGAACCCCCGCCGGTCCTGTCACGGTCCGGCGGGGGCTTCCGCTTTCACTCCCCCTGCTTGCCCTTCCTGACGGGGGCTCCTCCTCGTTCAGACGGTGAGGGCGCGTAATTCCCGGGTGGCGGGCACCGTACGAGCGCTTTCAGGTAGGGCTTGGATGATCTGGCCCATGATCCGGCGGCGTGAGGCTCCCAGTGGTTGTTCCTCGGCGGCGGTGGAGGCGATGTCGAGGCTTGTGGTGATGTCCCGGTCATGTACGAGGGCGAGCGCCTGCATCAGCTTGAGTTCGGTTACATCTGCGCGGAGGGTGACAGGGCAGAGGGCCAGGGCGCGCTCAAGGGCCTGTGATGCCTCGGCCGTGTCCCCCATGAGGGCTGACGGGTACGCCTGGCTCCAATGCATGCGTCGCTCTGAGAAGCTCCACAGCGGTGATCCCCTGTCGGGGTCGGGTAGTGCTTCGTATGTCCGGTCAAGGTCGTGCTGTGCGGAGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 80493-81105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000004.1 Acrocarpospora sp. H8750 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 80493 30 96.7 31 .............................C GAGAGTCTTGCACCCGGCATTACGGACCCCA 80554 30 93.3 31 ............................TG ATCGCCGCCGACCCAGAGACATTCTTGGCAC 80615 30 100.0 31 .............................. CGTCCAGCCGGTGGGCGGTGACCGCCGCCGC 80676 30 100.0 31 .............................. GAAACGGGCTGCGGATATTCGGGGCGAAGGG 80737 30 93.3 31 .T...........................C GGCAGGACTTCACCCAACGGGCAAGGAAGGT 80798 30 93.3 31 .T...........................G GGGACGGGATCCGTGAAGGCCTGACCCCGCT 80859 30 86.7 31 .TA.....................T....C GGGCCAGCGTCCCGGCGGCCGAGTGGATCTT 80920 30 90.0 31 .T..........................GG TGGTGGCGACGAGATCCGGCGCCCGCTCGTC 80981 30 86.7 29 .T.................A....A.T... ATGCCGTGGCCTATAGTTTGGCGTTGGGA 81040 30 70.0 5 .ATTA.................GA..TT.C ATCTT Deletion [81078] 81075 30 86.7 0 .........................GGGG. | T [81078] ========== ====== ====== ====== ============================== =============================== ================== 11 30 90.6 28 GCGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : ACGACTCCACCGACGGCCAGCAGGTTCCCCGCAGACGGCCAGATATCCCCATTTGATCGCGATCAATCCCGGTCGGCAAGAGCCGAGGGGGTGAAGAACTGCGGGGAGATCAAGGAATACTTGAGATACACGACCTCACAGGGCGTCATCGTGCTGCGGTCGTGCTGGCCCGGGTGCGGACACCACACGGCGGCACATTATGTGAAACGCACGCGGCGGGCAGGTGCCGAAGGACGGCGGCACCGGGGCGCGGGCGATCGACGGATGACTGGGTGGCTGCTGGCGGGGCGATTCAAGGCAGCCTCCAAGAAGAAGCCACGTGTCCGCCGACAGTCAAACCTCGTCGAATCCCCACGAAAAAGATCCACTTCCCAGCGCGGCCGCATGCCCTGCCCTACCATCAACATGCCCACGCCACCTCCCCAAGGTCCGAAATGCCCAACTCTTCAAAGTTAATAAATTTCCACCACCTCGCCAACTAACTCCCCAGGTCAGCAAGT # Right flank : TGATCCAACGCATGAGCGCTCAGGCTGGCCATGAGGAGGCCTACAAGCAGCCCCAGGTGCCGCGGACTGCCGACGGCATCGCCGCTGCGCTTTCTGGTAGTCGGCGTATGGAGTTCTATCGTGAGCTCGGTACAGCTCCACTTGAGCAGGTAGAGTCCCTCCTGCGCCGTTGGTGGGGGGAAGCGATGCTTGACACCGACCCGGCGGTGAAGGACGTGGAGCGGCAGATACGGGAGGGCCGGATGCCTACGGGCACGCCCGCTGAGAACGTTTTCCCCGACTGGGCGGAGCAGGTGGCCCAGGCGCGGGCTCGCCGGAGATAAGCTACCGCGCCGAGTTGCATCCGTTCGCGCTGGCCCAGATGAAGGGGCTGCCGTTCGAGGCCATCCTGGCATTGGCGGCCAGAACTGCCGAACTGATTGACGAGCCGTGGGATGCCACCGCCGTTTACCCCGATGATCCGTCGTTTCGGAGAACGGTCTTCGGCGACTTCGGGGTCA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36518-35628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000010.1 Acrocarpospora sp. H8750 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 36517 30 100.0 35 .............................. GCGTGCTTCTTCGCCTCCCGCTCCTGCTCCTTCAG 36452 30 100.0 40 .............................. ACGTACGTGAGCACCGCGTTGATCCGGTCGCGCAGCCCCT 36382 30 100.0 34 .............................. CTGGCTAACAGCACCATCCAGTCGTCGATCCCGG 36318 30 100.0 36 .............................. CTTGCGCATGTCGGGGAGTTCCTCGGGATGGTGGGG 36252 30 100.0 33 .............................. ACGGCTTCCTCGCTGCTGCCCGGGGTGGCGGGG 36189 30 100.0 40 .............................. GCCTCGCAGTCGGAGGCGCCGAGCAGGACGCCGGTGCCCT 36119 30 100.0 37 .............................. GTTGGCGGTCGAGTCCAGACGGCCGCCTGCTCTTGCA 36052 30 100.0 36 .............................. CGGCTGCCGTAGACGGGGCACTCGGTGAGGTGCCGC 35986 30 100.0 39 .............................. TACCAGATGTTGACCCGGGCGCAGCAGCCCCGGGTGCTC 35917 30 100.0 34 .............................. GCGGCAATGTGCGCGTACTCCGGCGTGCCCTCCG 35853 30 100.0 37 .............................. GCCACGGTCCGGGGCCGGGTCGCCTCGGTGCGCACAG 35786 30 100.0 34 .............................. AGGTACATCATCCCGGGCTGCTTCTGCTTCCACA 35722 30 100.0 35 .............................. CTCCGGGGTGTCCGGCGTGCGCGGTGGAGGCCGCG 35657 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 100.0 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGCCTGGCGCTTCGTCAACGAGTTCGCCGACATCGACGTCACCGCCCTGGCCCCGAAGGTCACCTGCCCAACCTTGATCCTCTGCGGCCGCCGCGAACCCGACAACCTCTTCGACCAGTCCCGGCTGCTCGCGACCTTGATCCCCGGCAGCCGCCTGGTCCCCCTGGACACCGCCAATCACCTTCTACCCGCCCAGGACCCGGCCTGGCCGCGCTTCCTCACCGAGGTTGACCAGTTCCTGCGAGACCCCGAGCGGCCACAGCGGTGAGAACGCCACCTAGTCATGGATCGTCTATATGGATGTACGGCGTGGGCGACGGAGTACCTCTCTTCCGATGCCGACGTGTCAGCCTCACCGATATCCTGTGACCCAGCCCATCCCGTTTTGATCATGATTTTGCAGCAAACCTCCCGGGTCTTCTGCACAACCGGAGGTTCACTGCAAAACCTGGCCCCAAACCGCCGACAAGACCTGCTCTGACCTGTGTCTTTACATTGGG # Right flank : GTGCCTGCACGGTGGGAATCGTCATGATGGCTGCTGCTCACTAGGACGACGGGATCTCCTTGCCGGGTAGTTCGGGTGGTCTGCATCGTCTGGTTGGTTCAAGCTGGGTGAGCCGGACCGCGCCCAGGGTTGTCCCAGCTGTTCCCGGGCCACCGATCGTGCCTGTTCGGCTGGTCGAAGAGGGGTACTTCTCCCAGGTTCATCGGGGCCTGTGCCCTGTACTCGCCGGTGTCGTCGTAACCGGTGTTACGGGGACGGGACGGGATGCGGTTCACGATCTCGTGAATCCAGCCGAGTCTGCGGCCGAGGCGGACGCGGATTTGGTCGCCTTCGGTGAGTTGTTGCCAGTCCTGTTCGCGGATTCCGAAGGCTTTGATGTTCCGGTCGCGGCCCTCGTCGATCGCGCACCAGTGGATGTACTTGGCGTTGCCTTCGCCCGCTGAACCGGTCTGGACTTGACGGAGCCGTACCACCTGGCCCTCGGTTCGTTCCCCGGTGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 39960-39203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000010.1 Acrocarpospora sp. H8750 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 39959 30 100.0 35 .............................. GTCATCGAGGACTACCCGAAGCGCGGCGAGCGCAG 39894 30 100.0 36 .............................. GCTGTTGGACGGTCTCCTTCCACGTCCTGTTCTGAG 39828 30 100.0 36 .............................. GGTGCATCGGCCGCGCGCCGGGGCCGGACTCCCCGC 39762 30 100.0 33 .............................. CGTGACGCATGGCGTCATCCGACGCGTCCAGCG 39699 30 100.0 39 .............................. ACTGCGGAGACTGCCGCTCGGGCGAATGCCATTGGGGTG 39630 30 100.0 36 .............................. CCGGCGAACTGCCACATGCCCTGAGCGCTCACGCCC 39564 30 100.0 36 .............................. CCGGCGAACTGCCACATGCCCTGAGCGCTCACGCCC 39498 30 93.3 33 ...............AC............. TACGGCGGATGGCCGATCGCGCGGAACGGACGG 39435 30 90.0 39 ..........T....AC............. CTCAGTGACGACCAGGTGTCTTTGCAGGTGGCTACGCCG 39366 30 90.0 36 ..........T....AC............. CTGATGAGGTTTTTGGGGCAAGGGCACGGTGACCCT 39300 30 90.0 38 .........A.....AC............. CGCACGCCATCGGTGCCGCGAGAAAGGCGTCAGGCGTG 39232 30 93.3 0 ................C......C...... | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 96.4 36 GTCCTCATCGCCCCTGAGAGGGGTCGCAAC # Left flank : GCGCCACGCCGCCGCACGGCCTGCGGAAACACCGGAGCCCCATACCCCAGCGGAACCATGCCGTACGGCCCCGCCCCCTGGGCGTGCAGCCGCTGCCCCAATTCCGGCGCCTCCCGCGCAAGCAGGTCGTACGCCAGAGCACGGCCGGGCGCCAACACCTTCGCCCATGCAAGCTCACTGGCCCCCGTGGTGACCTCTATCCGTAACCTCACGCTTCCTCCCGTGCTCGTGCTTCACCCAATACAGATGGACGACGGCAAGCACGACCCGAACGGATTGCTCCTCGCGCAGGTCAGGGCTGGTGAGTAGCCACAGATCCTCAATGAGGGAGATCATGCGCAGACAATCGAGCTACGCTCCTCCCAAGGAGGCAAGGAGTAGCTGATGATCATGCTTTTTGCAGCAGACCTCCCGGGTTTTCTGCACAACCGGAGGTTCACTGCAAAAAGGCAGCCCAAAGCGTGAACCTTGCTTGAGTTCACCTGCGGCTTTACCTTTGG # Right flank : GCGCACTTCGCGGCGGGGTAGGCGGCGCCTCGCCCCTCGAAGGCTCAGACAGTGAGCAGGTAGGAGGCCAGCCAGAGGACGGGCATTCCGGCCAGTAGGGCGGTGCGGGGCGATCCGGTGCGGGTGACGGCGGCCACGGCCGCCGTCACGGCGAGTAGGGGTGGTATGGCCGAGGTGAGGGGGCTCTGGGCGCAGGTGGCGATCACGCTGGTGGTGGCCAGTGCAGTGAATGCCGCTGGGGCGACGAAGCCGGTCGCCCGTTCCAGGCGGTCGGGCAGGATGACCTGGTCGGCGAGCATGACGAAGCTGATCCGGAAGGCGTAGCTGCCCAGCCCCACGGCGAGTATGACAAGCCAGGGTGCGGTCATCTCATTTCTCCTTTGAGTCATTTGCGTACGCCATGGCGATCCCGGCGGCGATCGCCATGGACACCCCGAGGTGGAGGGGAAGGCCCGTGGTGGTCGCGGCCACCGACGCGGCGCAGAGCGCGGCGGCGCGTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGAGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 48321-49279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000010.1 Acrocarpospora sp. H8750 NODE_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 48321 30 100.0 33 .............................. CGCAACCCGGGTGGTGAGCCCGCGCACGATCGG 48384 30 100.0 36 .............................. TAGTGGTCTCGGCCCGGGGAGTCGTCCCAAGCGGCG 48450 30 100.0 34 .............................. AACCAGCGGACCCCTTCGAGGCAGCTCGCGGTGA 48514 30 100.0 35 .............................. GGCAGCGGGTGCGGGGTGCACACGTCGGCGAACGG 48579 30 100.0 34 .............................. CCGGCGAGGCGACCGGCCACCGGCTCGCCCAGTA 48643 30 100.0 37 .............................. TCGAGCCGGTGTGGATCACGACGACGGTGACCTTCCG 48710 30 100.0 37 .............................. GTATGTCTTGTCACCAACCAGGACGCGGACAACCCCA 48777 30 100.0 37 .............................. CCGTTCATCACCTTGAGTATGGACCCAACGACTGGGA 48844 30 96.7 41 .........G.................... GACGGGAGGCGATCGCCCGGCTGGAGCTTGCCGCTGGCGAG 48915 30 96.7 37 .........G.................... TGGTCCTGCGTGACCTGGAGTGTGCGGCGTGCGGGAG 48982 30 90.0 37 ........TG.......A............ CAGATGCCGCCGATGGTGGTCTCCGGGCACTCCTCGG 49049 30 93.3 42 .........GT................... TCGAGGTAGTCGTCGGGGTGTCCGGTCCATCCCGGCGAGCCA 49121 30 93.3 36 ........TG.................... GGTGCCACCACCATGTGGGGAGATCCGGTTGCCCTG 49187 30 86.7 33 .........G.......A..CA........ ATCGTGGTCAGGAGCAGGTGAACCGTCTCCCAG 49250 30 86.7 0 .........G.........CA.......G. | ========== ====== ====== ====== ============================== ========================================== ================== 15 30 96.2 36 GTCCTCATCACCCCTACGAGGGGTCGCAAC # Left flank : AACGTGGCCTACGAAGAACTGCTGTACCTGGAGGCTTTACAACTCACCCGCACCTGCCTGGAGGGCACACCGTACAAGCCGTTCCGGATCTGGTGGTGACCCCGCATGTACGTCGTGGTCGTCTACGACACCCTGGCCAAACGCAACGCCGCCATCCTGCGCCTCTGCCGCCAATATTTGCATCACGTACAACGAAGCGTCTTCGAAGGCGCACTGACCCCAGCCCAACTCCGCCGCTTCCGCCACCGCGTAGAAGAGGTAATCGACCAGTCCTACGACAGCGTCCTGGTCTTCACCTTCCCCCCAGGCACCAACCCACAACGCCAAGAATGGGGCATCCCCCAGCCGGCCCCCACCGATATCCTCTAACCCAGCCCATCCCGTTTCGATCTTGATTTTGCAGCAAACCTCCCGGGTCTCCTGCACAACCGGAGGTTCACTGCAAAACCCGGCCCCAAACCACCGACAAGACCTACCCTGACCTGCGTCTTTACACTGGG # Right flank : CGCTGCATTTCGCATTTCCGATGCGCCGCGATAGGAGCCCGACTTCAATTTCCGCGAAATCGCGGCAGAACTGGGGCAGTTCAGCCCTAAGTGACAACGACGCGGACGAGGAGTTCAGGTCGACGGAGTTGAGGTCCATCTCGAATCGGGCCGGGTTGTCGATGCGCCGATCTTGTTTATAGATCATCACGACCAGCACGGCGGCGTTCGCCTATCGTCCACAGCCGAACATGTCGTCGACGAGTTTGGGAAACGCTCACATCGAGCATCTTCGCGTCAGCCGATTACAAGGCGTTCGCCGCCGAAGTCAGCGATGATCTCCATTCGTCCGCCGAGGGCTTTGATGTAGGCGGCAAGGGTTCTCAGTTCACTGGTATCGACTTTGGCGCGTTCGATGGCGGAGACGCGTTCCTGGCGCACGTGCATTCGCGCTGCGACCTCAGCCTGCGTCAATCCCAAACGCTTGCGCATCTCGGCCAGCCGATGGGCCCTGCTGACGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 65055-64364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000010.1 Acrocarpospora sp. H8750 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 65054 30 100.0 33 .............................. GATCCCAGACGAGATGCACAGGCCGAAGGACGG 64991 30 100.0 36 .............................. GGGTTCACCTGTGACCAATCGAGGGCGGTGGACCCT 64925 30 100.0 36 .............................. ATGGTGAAGTAGGAGCCTGCTGCGTGCGTGGAGGCG 64859 30 100.0 35 .............................. CGTCCAGTTTCGTGGACGCGAGCAGCAGCTCGCCG 64794 30 100.0 35 .............................. GGTGTGTGCTCGCTGACGCCCACGTCCAGTCCCAG 64729 30 96.7 41 .........G.................... TTCCACCCCCGGGATGTAGCTCACAGGACTATTCCCCCCGG 64658 30 96.7 38 .........G.................... TGGATCTCGAAGACGACACCAGCACCGCGTCCGTGGGG 64590 30 96.7 37 .........G.................... CTGATGACGCCGCCCAGATCCAGCATGATCGCTTTTG 64523 30 93.3 34 .........G....A............... CCTCCTTGCTCGAACTCGCGCCCGCAGTGCGGGC 64459 30 96.7 36 .........G.................... GTGGTTTCGCCATCGTTGGAGGTCTGGCCAGCCTTG 64393 30 90.0 0 .........G......T.....A....... | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 97.3 36 GTCCTCATCACCCCTACGAGGGGTCGCAAC # Left flank : GTCGCCGAGGGCCTCCGCCACGAGGACGAAGCCATAGTCGCCCACCGCTGGCTAGCCGAAATCTTCCGCCCGGTCGTCACCGCGATCCCCGCCCCCCTCCGCGGCAAACTCGAGCAGGCCCAGCTCTTCCACGAAGTCCTCGACCACCGCTGGTACATGTCCGAAGCCGCCGGAAAGGACGTCGGCCTCAAACCCGCCGTCGACTCGTACATCAAGAACGTCCTAGTCCACAAACCCGACGAGAAGGCCATCATCGCCTCAGCAGACGGCATCTCCCCTTGAAACTGCCCTCGACCTGGACCCCCAGAGACAAGCCATCCCTGGCAGCTGCAAACTGCCAAAGTGACCCCAAGAAGCCGCCGCAGATGTGAAGAGAGCCTATTCTTGATGTCGGCATTTGCAGCAAACCTCCCGGGTCTCCTGCACAACCGGAGGTTCACTGCAAAACCCGCCCCCAAGCCACCGAGAAGACCTACCCTGACCTGCGTCTTTACATTGGG # Right flank : GATCCACTTGCGGTGGCGGAAGTCCCATTGCGCGATAGGCCAGGTCATCGGTGAACTGGCCTATCGCGTGGTGGGCAGATCAGGCTGGGCGCTTGGGTCGAGTGAGAGTGCCGGACGTTCTATGGGTGGCATTGCTCGGTGGCCCAGTCCAGGTCGGCCTGGGTGATCTGGTTGACCCATTCGCGTACCTGGGCCTCGGCCTGGGTCGGCTTGAGGTTGAGTTCTGTGGCGGCCCATTCGATCAAGTTCGGATCGGGGTTGGTGGCGGCCGCGCAGATGCGTTCCAGGACTCGATGTTCGGGGGAGCCTGTCGTGGTGAGCAGGGGGGTGAGTCTGCGTCGTATGGTCTGTGTTTCCTCGGTTTGGATGAGGAGTTCCTCTGGGTTCGTGGGGGTGTTGGCCGTCCAGGGGAGGGGGTCGCCCTCGCTGAGGTACTGGAACACGTTTGCCAGGTAGAACTCGGGGCGGAGCGCGTGCAGGTGGTCGAGGGTTTGGCGGAG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGGTCGCAAC # Alternate repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 65844-62000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000025.1 Acrocarpospora sp. H8750 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 65843 37 100.0 37 ..................................... ACCCGATCGGGCGCGTACGTCCTGGCCCGTCTCGACG 65769 37 100.0 36 ..................................... CCGACCGCAACGCGGAAAGTCGTGCGCGTGGTCGCG 65696 37 100.0 35 ..................................... GTCGGGCGCTAGCCCGTGAGGCCGGAAATGCCGTT 65624 37 100.0 35 ..................................... ACCGGTCAACCCGGCGAGGTCGCCGTGCAGAACAC 65552 37 100.0 41 ..................................... AATGTCCCGCATACTTGCTCCTTTGCTCGCTATCAGGGGTT 65474 37 100.0 35 ..................................... AGCCTGCGCGGATTCAACATCTAGGGAGGTCCCTG 65402 37 100.0 36 ..................................... TTCGAGTCCGCCCTCGGCGAGCAGGTCTACCGCCAG 65329 37 100.0 36 ..................................... CCGGACGCGGGGTCGTCGAAGGCGCGGGTGCCGAGC 65256 37 100.0 40 ..................................... ACCCACCAGTCCACGGCGATGAGGATCGCTCGGATCGCGA 65179 37 100.0 38 ..................................... ACGTCCTCGATCGGGACGAGGCCGCGGCGCGTCAGCAC 65104 37 100.0 38 ..................................... AGCGCCTCACGGAGCGTCTCGCCAGCGCGGCGCGTCTC 65029 37 100.0 36 ..................................... CCGGACCGATATCGAGGCTGCGCTGAGGGACCTTGA 64956 37 100.0 37 ..................................... CCCACCGAGGACGAATGCGACGCCTGGTGGCTCCAGT 64882 37 100.0 35 ..................................... CATGCGACCTGGTGGGGGTGCGGCGCCGCCTCGAT 64810 37 100.0 36 ..................................... TAGGTAACGCCAGCCTGAGAGCGCTTGCGGTCCGAT 64737 37 100.0 37 ..................................... GGGAAGCTGGATCACCTTCTTACCAGGCACACGGGGG 64663 37 100.0 36 ..................................... CTCGTCAAGGTGGTGACCTGCCAGCCCGAGCCCTCG 64590 36 75.7 13 .....................-..C.G.C...CGGGA TCTACCACGGCGC Deletion [64542] 64541 37 100.0 35 ..................................... ACAGGGCACCCGCCTCGCGCTCGGCGAGCTCGGCG 64469 37 100.0 38 ..................................... CGAGGGCCGATACCGGACGGCCACGAGTACGCGGGCGA 64394 37 97.3 38 ............................C........ GAGCTCGCCGTCCGCCAGGACGTCAAGCGGCTCGCCAC 64319 37 100.0 39 ..................................... ACGCAGCGCTCCTGGCGTACTCGTAGGGACGACGACGGG 64243 37 100.0 38 ..................................... GTTAAGGAACTCAAGGAACGCGCGGAGTCCGGGGAACC 64168 37 100.0 39 ..................................... TTCCCGGGTGAGCGGCGCGATGCCGTCGGGGAGCTGGAC 64092 36 97.3 38 ...............-..................... TCGGCATGGAGGAGTTGGAGGATGCGGACGAGGTCGGG 64018 36 97.3 37 ...............-..................... TCTCTGTTCAGGACTTTCAGAGGGACTGGGCTCGCGG 63945 37 100.0 36 ..................................... ATGGTCCAGGCGCCCGGCGTTTTCCTCCAGGACCTG 63872 37 100.0 35 ..................................... ACCAGGTCGACCCGGTCCTCTCCCATCGGTCTGTC 63800 37 100.0 35 ..................................... ACCCTGTACAGGTCCGGGTGGTCTACGGAACGCGG 63728 37 94.6 33 ......A..............T............... AGATGACCGAGATCCAGGTGACCACCGTCGAAG 63658 37 100.0 36 ..................................... GCGGCCTAGCTGGGTGGCGTCGTGCCACAGTTCCAG 63585 36 97.3 35 ...............-..................... CTCAGCGGGTACCTCAGCTGAGTGCTTGACCTGCA 63514 37 94.6 38 ....T.T.............................. ATCTGCCTCTCGGCCCGCCACGGCAAGAACGCCGCCTA 63439 37 100.0 38 ..................................... GCTGGGTTCGACTCAGCGACACCCATAGGCAGGAACCA 63364 37 100.0 39 ..................................... CAGCGGGCCCGCACCAGCACGAACTGGAGCACGGCGAGG 63288 36 94.6 41 ..........-.................T........ ATGTCCGGGCTGAGCGGGACGCGCGGCCGATCTATCACCCA 63211 37 100.0 36 ..................................... GCCGACGGCCTGGTCCCATCCGCGGACGCGGTCCCC 63138 36 94.6 35 ..........-...........T.............. GTGGTGCGACGCTCCTCCCTCTCGCTGAAGGTCAG 63067 37 97.3 36 .................C................... GTGGCAATGCTCGCGCGGCAGATGGACGCCTTCGGC 62994 37 100.0 38 ..................................... CAGGCCATGCCGGTCACGTAGTCCGTCGGCGAGAGGTA 62919 37 100.0 40 ..................................... GTCAACGAGGTCCGGGCCGTCACCAACGATTCCGGGACCA 62842 37 91.9 38 ..............T...TC................. GCTGAGGGCCTGTTCCGGCTGTCGGCGCCCCTGGTGGC 62767 37 100.0 36 ..................................... GCGACGGCGACGGCGTGACGGTGGGCGTCGATGCGC 62694 37 100.0 33 ..................................... GAGGCGCTCGGCGGGGACGCGGACAGTGCTCAG 62624 37 100.0 35 ..................................... CTCGTTCTCCGGCTGCTGGGCGGCCATGCCCTGCT 62552 37 100.0 37 ..................................... GCTGCTCCAAGGCATGGCGAAGGATCAAGCCGAACAG 62478 36 97.3 37 ...............-..................... GCTGCTCCAAGGCATGGCGAAGGATCAAGCCGAACAG 62405 36 97.3 37 ...............-..................... TCCCGGATTCAAACAGCGGCTACAGACCCAGTCGGAC 62332 37 100.0 37 ..................................... CAGCCAGCCCTCCAGCCGCTGCTGGCCGGGTTCCGTG 62258 37 97.3 36 ...............T..................... GATGTTGTACTTCGACGTGCCCGCGTCCTCGGTCTC 62185 36 94.6 38 ...A...........-..................... ATCAGGGCGTCTTCGATCGGCCCGTCGATATCGCCCAG 62111 37 100.0 39 ..................................... ACGTACACCACACCCGCAGGCAGCGTGGTCACCCTCAAC 62035 36 94.6 0 ...............-.C................... | ========== ====== ====== ====== ===================================== ========================================= ================== 53 37 98.4 36 CCAGCACCGGCCCCCCGTGGCCGGTGAGGATCGCAAC # Left flank : CTGCTGCCCCTCATCCAGGCCCGTCTCCTGGCCCGCCATGTCCGCGGCGACCTCGACCAATACTTGCCCTGGACCGTGAACTGACATGGACCTGCTGATCACGTACGACGTGGAGACCGTCACACCGGAAGGCCAAGCTCGACTTCGTCGCGTCGCCAAGATCTGCGAGGCGTATGGCCACCGCGTCCAGAAGTCAGTATTTGAGGTCGTCTGCCGCGATGTAGACAAGATTCGCCTGCTCGCCGCTCTGCACCAGGTAATCGACCCTCAACGTGACAGCATCCGCATTTACCACCTGCCCCATCACGCTCTCGACGATGTGGAACACCTCGGCCGTCCCCGCGACATCGACCCACGGGGACCACTAGTGATCTAGGAACCCCAAGCAGGCAAGCGACACGCCACTCGCACCCAACCCTCGAAAGCCAACAACCGGACATCCAGCACATCCACAACTATCCCCAACACCCCTTCTCAGCAGAAGACCCTGCTCAAAGACT # Right flank : TCATCTTCCGTCCCCAAGTCGGGAAGTCCCGGTTGGTCCGGGCGGGTTACATGCGCACCGGCCCGTGGAAGGCTCACCGGCCGGCTCGACAGGGCAGCCGCAGCAGGTCCCTACCTGCCCCGGCGGCACGAGCGGCTCTACCGGCCCGGCTGCCACCATGGCGTGCGGGGTGGGCGCGCCGAACGGGTGAAGGGGGGAGGACTGCAAGCGGGATCCTCGCCCCGCTCGACAAAGGACTCGCCAAAGCCAGCCGCACCAGGGACGACGTCAGCGGGGTCGATTGTCTCTGCTGGCCCCTGCGCGGGGAAGCATCCGAGAGCTTTCGCACATCCCTTAAGCGCGGATCCAGTTATCGCACTCTTGGCGCATGAAGCCTTCCCCGTCTCTGACAGTGACCGTTACGCCTTCGGATCGTTGATGACGGAGCCGTTGTCGATGATGGCGCCCATTTTCAGCGACAAGGCGATCACTAGAGACCTCATGCCACTTCGTGGCGCCCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCGGCCCCCCGTGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 82356-77816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000025.1 Acrocarpospora sp. H8750 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 82355 37 100.0 39 ..................................... CGAGCAGCATTCTCGCCCCGGGGTACTCGGTCACTGCCA 82279 37 100.0 35 ..................................... TGCTGGCCGGTGTTGCGCCCGTGGCCGTGAAGGAA 82207 37 100.0 36 ..................................... GCGATTGACCGCTTTCGACCAGCTCAATCGCACGAC 82134 37 100.0 38 ..................................... CGGCGGGTGTGGGCGATGAAAACCGCCTCTGAGGGCTC 82059 37 100.0 40 ..................................... CGCCACGCACTGCCACGGGTCAGCGGAGGCTCTAGGCCAG 81982 37 100.0 35 ..................................... TCTGCGAATTTGTGGGCATCGCCTGGCTATACCGG 81910 37 100.0 37 ..................................... CCCACCCCCGCCTCGGCTTCGGCCGGGGCGGGGCCCG 81836 37 100.0 38 ..................................... TGGGGCATGATGGACCTACCTCTTTCTGCGAGGTGCCC 81761 37 100.0 35 ..................................... GAGAAGTGGGGCAAGCGATGACCGTTCAGACCGGC 81689 37 100.0 36 ..................................... GAGGTCATCGGCCATGAAGTCGGCATCAGCCGCCAA 81616 37 100.0 37 ..................................... CACAACGGGAACGCGCCGTCGGTGTGCGCTGGCCCAT 81542 37 100.0 36 ..................................... CTGGATGTCCCTCGCCCGTAGCGACCACGCCACCAG 81469 37 100.0 42 ..................................... CCTCAACTCGGGGTGGGCGTCCAGCCATTCGAAGGACTCCAG 81390 37 100.0 36 ..................................... CTGGGAGCACGCCCAGAACCAGATCGCCGGCAGCGC 81317 37 100.0 35 ..................................... CATGGAGACCCACACGCCTCGGTTTCGCGGGCGAG 81245 37 100.0 34 ..................................... GCTCTCCTCGCCGAAGAACAGATCCAGCGGCAAC 81174 37 100.0 36 ..................................... GGGGGTCCAGTTCGGAGGTGTGGGCAGGTAGCGGGC 81101 37 100.0 36 ..................................... GCCCTTTGGGCCCCCAAATTTCCAAGTCCTGACGGC 81028 37 100.0 39 ..................................... GCCGAGGCGGCGGGCCAGGCCGTAGAAGTGGTGGTAGGA 80952 37 100.0 38 ..................................... GTCCTCGGTGGGGAAGACCAGCCCGGCGCGGCCCTGGG 80877 37 100.0 35 ..................................... AAGCTGACGGTGCAGATTTCCGGCGGCACGCCGTC 80805 37 97.3 36 .....G............................... GTTTCGGCCGGCGCCGATGTGAGCACGGTGCTCGTG 80732 37 100.0 38 ..................................... TGCGGCGACACGCTGCAGGTCGCCGACGGCGCCGCCGT 80657 37 100.0 34 ..................................... CCTACGCCCGGAGGAGACGAGTGGGGGGTCATAC 80586 36 97.3 40 ..........-.......................... CAGATCGCATCCAGGTCCGGAATTTCCCGCCCGTCTGGAG 80510 36 97.3 36 ..........-.......................... TCGTGGTCATCATCGGGCTGCTGATGGTGATCCTCG 80438 37 100.0 38 ..................................... CCCGACTGATTGAGGAGACTCTGTTGCGATGGCGTCGT 80363 37 100.0 40 ..................................... GACGGAATCGTGTCCAAGTCGGAGGAGGTCATCCAACGGG 80286 37 100.0 37 ..................................... TCGACCCGGGACAGAGTGTTGAAGCCAACCCCCGACT 80212 37 100.0 37 ..................................... GGCCGGTCGGCAACGGAGAGGCCATCCGTGGGCGCCG 80138 37 100.0 37 ..................................... TTCCTGCGGTGCGGACCTCCCCCGTGCAGCTGCACGG 80064 37 100.0 39 ..................................... GCGATCGCCGCTGACACCGCCATGGGGGCACTGTCTCTG 79988 37 100.0 38 ..................................... GGTGTAGCCATGGTTTCGGTCCCTTTGGTGGGGGAGCG 79913 37 100.0 37 ..................................... GGCGAGTCGGCACGGCGTAGCGCGGGCGGCGGGACGG 79839 37 100.0 35 ..................................... GCCGTCAAGTCCACGGCGGCCGACGCCCTGGCCCA 79767 37 97.3 35 .........C........................... GCGGAGCTGAACTCGGGGATCAGCCGGGCGGCGAA 79695 36 97.3 36 ...............-..................... CGGACGGCGTTGCCGTCCTCGTCGCGGCCGAACAGC 79623 37 100.0 37 ..................................... GAGTGGGTGGCGCGCATCGTCGCCCAGGCCCGCGAGG 79549 37 100.0 35 ..................................... ATGGTGCTGGCCGAAACCATCTCGGAGAAGGCCGA 79477 37 100.0 34 ..................................... GACGGCGTTCCGGGATGGCGTGTACACGGTGGGG 79406 37 100.0 36 ..................................... TTGAGCGATGTCGTCACCGGCGGCGTCGCCACCCAG 79333 36 97.3 36 ...............-..................... CATTGGTCGGGGGGGTACGTCGTGGGGTACGTCGAG 79261 37 100.0 37 ..................................... CGCTGCACGGTATCAACCGTGTGGCTCGGCCTCGATC 79187 36 97.3 38 ................-.................... TTGAAGGTCGTTCATCGGGTGCGCTTGTCCACTAGGTC 79113 37 100.0 38 ..................................... TCACGCCGATCGAGGAATGGACGCTCACCCCCAACGGG 79038 37 100.0 40 ..................................... TGGCTCCCCGAGGACCGGCTACGGGACCTGAGCAAACGCA 78961 37 100.0 39 ..................................... TGGTTCGGCAGGCTCCCGAGCGCGTCACGCGCGCTGATC 78885 37 100.0 39 ..................................... CTCATGTTCCAGGGTGCTACACCCTGTAAGCCGCGGGCG 78809 37 100.0 35 ..................................... TGGCGCTCGGACTGTAGGAGGAACGAGATGTCCAA 78737 37 94.6 37 ........................G...........T TTCAAGTGGGACCTGCTCAACGCCCGCTACGGCGACA 78663 37 100.0 35 ..................................... CCGCTGTTCGTGCGGCCTGCCGGGGACGCCGAGGG 78591 37 100.0 37 ..................................... TTCAATGAACTCGTCATCCTGCGGCGGCTCATGAGTC 78517 36 97.3 35 ...............-..................... GGCCGCCACCAGCGCGGCGGCCTGCTCAACCCGAG 78446 37 100.0 36 ..................................... TCTTATGAAACGGTCCAAACCATCGGTTCACATCCG 78373 37 100.0 39 ..................................... CCCGTACCGGGCTTGAGGTTGACGAGTGCGATGATGAGG 78297 36 97.3 40 .........-........................... GTCGCTGGGCGGCCGTCGAAGGAGGACGTCAAGGCGCTCG 78221 37 97.3 39 ....................C................ AGCGCGGGCCAGCTCGTCCGCCGCACGCTTCCCGAACCA 78145 37 94.6 39 ................A...C................ ACCTACGACGCGAGCACGTACATGTTCGGGACGCTCGTG 78069 37 97.3 37 ....................C................ CGGGGAACCGCGGCGCACAAGATGCTGGACAACGGAG 77995 37 97.3 36 ....................C................ TTCGTGCACCACACCGCCGGGCCGAAGACCCAGACC 77922 36 91.9 35 .........A.....-....C................ GACCCCCGTTCGGCGCTCCACGTGCGCCCATGGCT 77851 36 86.5 0 .....G.........-...AC......T......... | ========== ====== ====== ====== ===================================== ========================================== ================== 62 37 99.0 37 CCAGCACCGGCCCCCCGTGGTCGGTGAGGATCGCAAC # Left flank : GAGGCGGTCGCGGCCCAGCCGGTGTACCTACGGTTCGACGAGTCCGACCGGTTCATCGGCTTCGAGCAGACCGACGATCCCGTCGCCGTCGTCCGGCATCTGGTGTGGCGGGATGCGGCTTGGCAGCACGCCCTCACCTACCGCTCCTACCTGTATGTCTTCCCCCAGTAGCGGGGGGTGGCGGATTGGGAAGGTTCACGTTGGCTGTACCGAGTTCACGCCATCGGGACCGATGCCTGTCCGCGCGAGCCGGAACGTGGTCAGCGCTGGCGTTCAGATTGTCCGGCGTGTTTCGTCTTACGTGGTGCGACATTCGCCGGGCATGATTTGCCATCGTGCACTTACGCTGAGTTCACGAGGACCATTAGTGATCTAGGAACCCTAAGCAGGCAAGCGACACGCCACTCGCACCCAACCTTCGAAGGCCAACAACCGGACATCCAGCACATCCACAACTACCCCCAACATCTCTTCTCAGAAGAAGACCCTGCTCAAAGACT # Right flank : TTATAGGGATCGAGGCGCGCCCTGGGCGCGCTGATGACCTCGGTCCCGCCGCCCTGACCAGCGAACTGTGCCAGCACGCCACCCGCGAGGCCTGGACGTCACCACTCCGTCCCTCGACCGTGTGAGCTCAGCGCAGTCGACGCTCTGGACTGAACCGGTCTGATAAACCGGTCGCGGCAATCTACGTAGATTTCAGCTGCCCGGCGAAGGCCCGGATCCGGGGCAGGTCCTCGGGGAAAACCCCCTCCCAGTCGTGCTGCAGCGGGACCCATGCGGCGGGCTGGTGGCTCTCGCCTACCACGTCGGCCGAACCATCCAGGACTGCCGCGTAGGAGAGGCCGAGCGTGGGCGTCCAGTCCGCTCGGTAGGCACGCACTGTCACCGCAGCGGGCAACTCCAGTAAATGGGCCTCCTGCCCGGTTTCCTCTCGCAGCTCCCTCAGGGCGGCCTCACGAGGAGTCTCGCCCGCCTCGACCGTTCCTCCCGGAGGAACCCAGCCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACCGGCCCCCCGTGGTCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 8042-9047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000052.1 Acrocarpospora sp. H8750 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8042 29 100.0 32 ............................. GCCGGTGTAGAGCTGGATGCCCTCGGTGTTGA 8103 29 100.0 32 ............................. CTTCCGCTCCTCCCTGATGTCCTTAAGGGTTT 8164 29 100.0 32 ............................. GCGAGCCAGCGGGTGGCCGTCTGCGCGAAGGC 8225 29 100.0 32 ............................. TACATGGGGCCGTTGGAGTCGGTGCCGCAGAA 8286 29 100.0 32 ............................. AGGGGATCATCCCGAAGCTTAGCCACAGCATC 8347 29 100.0 32 ............................. TAGCGTCATCTGGCCGCGAACCCAAGGGTTGA 8408 29 100.0 32 ............................. CCGGATTGGCAGGAGCACCACCGATGGAACCC 8469 29 100.0 32 ............................. CTCTACGGGGAGACCGCAGCCGCCAACCGCGC 8530 29 100.0 32 ............................. TCCGCCGAGCGGCTCGCCCCCATGCAGATGGC 8591 29 100.0 32 ............................. GGCGTCCCGGCCGGGATCGACATCCGAGGGAC 8652 29 100.0 32 ............................. TTCCGCTGCCTCTCGATCGAGAGCTTCAGCAC 8713 29 100.0 32 ............................. CTCGCGCGGCGGGCGGCCGGGATCGCCGACGG 8774 29 100.0 32 ............................. GTCCGCTCGGCCGAATCCGCTGGCGAGGTGGA 8835 29 100.0 32 ............................. GCGGTGCCCGCGGGAACCCGGGTGCCGGTGGT 8896 29 100.0 32 ............................. AACTGCGCGTCGGCTGGCTTCCGGGTGCGGCC 8957 29 100.0 32 ............................. ATCACTGTGGGGCTGGTGGCGCGGCTGACCAG 9018 29 96.6 0 ..................A.......... | T [9022] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGGTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CGACATCCCGTGGTAACCGCCCCCCTGTCACCCCGGACCGCCCCTTTCACGCGCTCCGTGATGCTTAGGAGCGGCCCCCGCCAAGGAGCGTCACCATGGCTTCGATGATCGTCATCTCCACCACCGCCGTACCCGACCACGTCCGCGGCGCCCTCAGCCGCTGGCTCATCGAACCAACCCCCGGCCTGTACGTCGGCACTGTCTCTGCCCGCGTCCGAGACCACCTCTGGGCCGCCGTCGCAGGCTGCGTCGACGACGGCGCGGCCACCTGCCTTCACCCAGCCGACAACGAACAAGGCTTCATCGTCCGCACAGCCGGCCACCGCCGCCGCCAGATCAGCGACTTCGACGGCCTCCAACTGGTGCGCTTCCTCCCCGAACCCCCACCCGAGCAATGACGCTCCCGCCCTGCTGGCCTGAAACAGCACCTCTCGCAATCACCGACAAACTCCGACAAACCTATCTATGCAGGTCAACCGAATTTCCCCAGCTCAGAAAGT # Right flank : GAACAGCAACGCCAGGCCAGGCGGGTATTGCGAGTGGTCCCCACAGGTGATCGTCTGATGGTGGGGGTGCAGCGGAGAGTCCGCCGCACCTTCTACCAAGGTTCTGGGGATCGGGTGTCCCTTAGTCGGCAGGAAGGCGTTCAGCGTATGGCGAGGCGGAGATGGCGGTGGGCCGGCATTGTCGCGGGTGCTCTCCTGCTGTCCGCGGTTGTTGGGTATCAGAACTGTCCCGACTGCCAGCTGGCGGGCTGCCATTTCATCAACCCGGTGCAGCGGCACGTGCCTCTTCCGCCGGGAAACGCCGGTCCCGCCGAGGTCGTCGGTTCGGTGGGAAAGCAGCCTGCCGGCCGATCCTGGAGGATCGTGGGGTACGGCACGGGCGTGTAGTCCGAGGGCATGTCGGATCTCATCGGATCCGCTCGTAGTACGAGGGAAGGTCCCCCCAGGGGTTCGGCTGCCGGAACGTGGTGAGGAACCCCGTTCCCGCCAGCCGAGAGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17931-18264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000052.1 Acrocarpospora sp. H8750 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17931 29 100.0 32 ............................. CCGGTCAGGATGCCGCCCTGGATCCAGGGCCC 17992 29 93.1 32 ...........A..............A.. TACTACCTTGGCGTCAACGGGGAGGCGTACGG 18053 29 86.2 32 T...C..TT.................... GGTGGTATCGGTAAAACCACCATCGCAACCAA 18114 29 93.1 32 ...................A......T.. CGTTGCGGCGCGCGGCCACCACCACGGCGAGC 18175 29 96.6 32 .......T..................... CCATTTCGGCACATTGCGGGCGTATCGCTCCT 18236 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 CTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : GGGGGCACTCAAAAAATTCCACCACTATTGACTACGCACCATCCCCCGAACACAACAAATCCAACAATCCCGACAAACCCTGATTGGCCCACTATCACCCACACATCCCGCCGATATCTTCGGTCCCCGACTGAAGCGGTACGGCATCTGCTACAGATTGTGTGGAGGTTCCCGATGTCCAGCAGAGTGAGCGAAGCCCGGCGCCGAGTGCTGCCGCTCATCAACGAGGTCACTGAGGAGGGCAAGGCTGTGGAGATCACCGCCAGGAACAACCGTGTCTCCCCGGTGCTGGCCGGCGAGCATGAGGCACTGGTGAGACGGCACACCTTTTGCGGTCCCCGGCCAACATGCGCAGACTCCTCGCCTCCTATCAGCACGCCCAGGAAGGCCGCCACGAAATCCGCGAACTCATCGACGACACCCAGGAATGAAGCTCGATCACCGACAATTCCCGACATTCACGTCACCGCAGGTCAGTTGTATTCTCCCTGCTAGGGAAG # Right flank : GTGGTGAGGGCATCCTCAAACCAGCCGCCGGATGTTCTCTCCCATTGACGAGGTCACGGAGGACTGCCAGGCCGTGGAGATCACCACCAGGAACAACTACCGCATGCCCGCCGCCGAGTACAAGGCACTGGAGGAGACAACGCACCTGCTGCGCTCCCCGACCAACGCGAGCAGGCTCATCGCCTCTTATCGGTACGCCCTGGAAGGCCACCACGAAATCCGCAAAGCCATCGACGGCGAGATCCAAGAGTGAACCTCAATCACCGACAATCTCCGACATTCGCGTCACCGCAGGTCAGTTGTATTCTCCCTGCTAAGGAAGTCTGCTCCCCACGCCCGTGGGGGTGAACCGTCCTACCTCGGCTACGCCGACCAGCAACTCCACTGCTCCCCACGCCCGTGGGGGTGAACCGACCGAGGAGATCTCGGCGTCCTTGAAGTGCCGGCTGCTCCCCACGCCCGTGGGGGTGAACCGTGCACAACCAGGTGCATGGCACGAT # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18587-20253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000052.1 Acrocarpospora sp. H8750 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18587 29 100.0 32 ............................. TCCTACCTCGGCTACGCCGACCAGCAACTCCA 18648 29 100.0 33 ............................. ACCGAGGAGATCTCGGCGTCCTTGAAGTGCCGG 18710 29 100.0 32 ............................. TGCACAACCAGGTGCATGGCACGATGGGAGAG 18771 29 100.0 32 ............................. TCCCCGCCGGGCAGGGCATCCTCACCCAGTCG 18832 29 100.0 32 ............................. TAGTCGGACACGAACGCGTCCTTCTCCTTCGA 18893 29 100.0 32 ............................. GTTGGTAAGGTGCGCCCTGAATGAGCGACTTT 18954 29 100.0 32 ............................. GACTTCGCGTTCGTGGTGAGGCCGGTGGCGTA 19015 29 100.0 32 ............................. GTTGCCACCCTCACACCCTTAGTAGTCCCGAT 19076 29 100.0 32 ............................. GCGGTCTTCGCGACCTTCAACACCATCGACAG 19137 29 100.0 31 ............................. GCGTCGGCGATCCGCTTCTGACTGTCCGGCC 19197 29 100.0 32 ............................. CTAACTAAATGGGCTTGGCGTCCAGAAGAACG 19258 29 100.0 32 ............................. CCTCTCGGAGACCTCCGAGAGGGCGATCAGGT 19319 29 100.0 32 ............................. GTAGATCGCGTCCGTATCGAACCCCAGCACCG 19380 29 100.0 32 ............................. CCCGCGCTGTAGAGGCGGTCATGCTGGGCCTG 19441 29 96.6 33 ............................A GCACGGGAAGTGCCGGAAGACGGAGACGAAGAT 19503 29 96.6 32 ............................T CTGCCGTCGGGGTCTTCGGCCCACATTTGGCA 19564 29 100.0 32 ............................. GTACCTACCGGACCGAGCTGGATAAGGCGATG 19625 29 100.0 32 ............................. CCGTACACCTGAACAACCCATGGTCGGGAATG 19686 29 100.0 32 ............................. CCGTACACCTGAACAACCCATGGTCGGGAATG 19747 29 100.0 32 ............................. TCCACCGGCGATGGGGTGCTGGACAGCCTGGA 19808 29 100.0 23 ............................. CGCACTCGCGCCCGGCCCCAGGA Deletion [19860] 19860 28 86.2 32 AC..-G....................... TCCGCCGGTCTCTACCGGGCGGTGGGTGTCGA 19920 29 100.0 32 ............................. CAGCGGACGGGATGGGCATGTGGTTCTCAGTC 19981 29 100.0 32 ............................. GCGTGGATGGCGCTGGTCTATCTGTGGTCGGC 20042 29 100.0 32 ............................. AACACGGTGGTGATGCCTGCCGGGGTGGGCAG 20103 29 100.0 32 ............................. GAGGACGTGACGGATCAGCTCCAGCTGCCGGG 20164 29 100.0 32 ............................. ACGTCAGCCCATCTGTGCAAGGAGTGTCATAT 20225 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 CTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : TATCGGTAAAACCACCATCGCAACCAACTGCTCCCCACGCCCGTGGAGGTGAATCGCGTTGCGGCGCGCGGCCACCACCACGGCGAGCCTGCTCCTCACGCCCGTGGGGGTGAACCGCCATTTCGGCACATTGCGGGCGTATCGCTCCTCTGCTCCCCACGCCCGTGAGGGTGAACCGTGGTGAGGGCATCCTCAAACCAGCCGCCGGATGTTCTCTCCCATTGACGAGGTCACGGAGGACTGCCAGGCCGTGGAGATCACCACCAGGAACAACTACCGCATGCCCGCCGCCGAGTACAAGGCACTGGAGGAGACAACGCACCTGCTGCGCTCCCCGACCAACGCGAGCAGGCTCATCGCCTCTTATCGGTACGCCCTGGAAGGCCACCACGAAATCCGCAAAGCCATCGACGGCGAGATCCAAGAGTGAACCTCAATCACCGACAATCTCCGACATTCGCGTCACCGCAGGTCAGTTGTATTCTCCCTGCTAAGGAAGT # Right flank : GACGGCAGCAGTCCCTGCAGTGGCAACAATGGCGGGAACTGTGTCGAGGTCGCACACAACCTCCCAGGAGGCGTCGCTGTCAGCGACAGCAAGAACACAGCCGGCCAGGCCGTGGAGATCACCACCAAGAACAACTACCGCATGCCCGCCGCTGAGTACGAGGCACTGGAGGAGACAACGCACCTGCTGCGCTCCCCGACCAACGTGCGCAGGCTCATCGCCTCTTATCGGTACGCCCTGGAAGGTCACCACAAAATCCGCAAAGCTATCGACGGCGAGATCCAAGAGTGAACCTCAATCACCGACAATCTCCGACATTTGCGTCACCGCAGGTCAGTTGTATTCTCCCTGCTAAGGAAGTCTGCTCCCCACGCCCGTGGGGGTGAACCGGTCGAGACCATCAGTTTCGGCGTAGACGTTAACTGCTCCCCACGCCCGTGGGGGTGAACCGATCACCGTCCAGCAGTCCAGCAGCGCCGACGCCTGCTCCCCACGCCCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 20614-21679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000052.1 Acrocarpospora sp. H8750 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 20614 29 100.0 32 ............................. GTCGAGACCATCAGTTTCGGCGTAGACGTTAA 20675 29 100.0 32 ............................. ATCACCGTCCAGCAGTCCAGCAGCGCCGACGC 20736 29 100.0 32 ............................. TGCTCGAACGCCTGGGCCTGGACCCATGTGAC 20797 29 100.0 31 ............................. GCGGCGATGTCCACGGTGGGCCGGTCGAGCC 20857 29 96.6 35 ............................C AAGCCCGCCGCCGCCACGCCAGAACGGGAGGAGAC 20921 29 96.6 32 ............................T CTGCCGTCGGGGTCTTCGGCCCACATTTGGCA 20982 29 96.6 32 ............................C GAATCTGGGACGCCCAGAGAGCGGAGCCAACC 21043 29 100.0 32 ............................. TGGAGCAGAACGGCGCTCGCGCTTCCGAGGTC 21104 29 100.0 32 ............................. ACGCTCTGGCAAAGACCCGGGCATTGGAGGCG 21165 29 96.6 32 ..................A.......... AACTCCCCCATGGTCCGGATGCTGACGGGAGG 21226 29 100.0 32 ............................. GTGTTCGTGAACTCCCTCTCGGACCTGTTCCA 21287 29 100.0 32 ............................. ACGTTTCCGGAGGCGCCGAAACTGGCCCGCGC 21348 29 100.0 31 ............................. ACCATCCCTGGTTGGGCCGGCGTTGGTGGGC 21408 28 96.6 32 ............-................ TGGATCACGGCGAGCAGGCCGCTAACCTGTCC 21468 29 93.1 33 ......A....T................. ACGCGACGCAGATCGACAACCCGACCAGCACCC 21530 29 96.6 32 ..............G.............. TTCAGCTGCACTGGGGAGGTGAGAACCCTGGA 21591 29 96.6 32 .....G....................... GCGATCGACACCGCAGCCCACGTGCGGTTGTT 21652 28 86.2 0 .................-.T.....G.T. | ========== ====== ====== ====== ============================= =================================== ================== 18 29 97.5 32 CTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : GCCCGTGGGGGTGAACCGGAGGACGTGACGGATCAGCTCCAGCTGCCGGGCTGCTCCCCACGCCCGTGGGGGTGAACCGACGTCAGCCCATCTGTGCAAGGAGTGTCATATCTGCTCCCCACGCCCGTGGGGGTGAACCGACGGCAGCAGTCCCTGCAGTGGCAACAATGGCGGGAACTGTGTCGAGGTCGCACACAACCTCCCAGGAGGCGTCGCTGTCAGCGACAGCAAGAACACAGCCGGCCAGGCCGTGGAGATCACCACCAAGAACAACTACCGCATGCCCGCCGCTGAGTACGAGGCACTGGAGGAGACAACGCACCTGCTGCGCTCCCCGACCAACGTGCGCAGGCTCATCGCCTCTTATCGGTACGCCCTGGAAGGTCACCACAAAATCCGCAAAGCTATCGACGGCGAGATCCAAGAGTGAACCTCAATCACCGACAATCTCCGACATTTGCGTCACCGCAGGTCAGTTGTATTCTCCCTGCTAAGGAAGT # Right flank : GGCATCAGTCCTCGTTGCGGTCGTGTCGGCCCTCAGCACAGTGCAGGAAGTCGTGGTTGGGAACGGGTATCGCTTGCGGTTTGTCTGTGTGTGGAAAGCCCAGGTGGACGGCCAGTCGGCTTTCGAGGGCTTGCATGGTGGTGCATCCCGTTAGGTTTAGCTTTTCGGGGGAGACCCCGTTGGGGCTTTCTGTTGGCCAGAGGTGTTTGGGTACGGCGAAGGTGCCTCGGTTCGGGACGGTGTAGACCCAGCCCATTGTGGTGAGTGCTGTGATCACCTTTTTGGCCGTCCGTACGCTCACGTCGTACTGGCTGCTCAGGCCCCGCAGGCTTGCCGCGCGGCGATGAGGTCCGATCTCGCCGGTCCGGATTCTGTCGATGATCACGTTGACGGCCTCGTCGATCTGCTGTGACTCCGGCATCAGAGCGGTGAGCCTGGCCAGATCGGAGGGACCGATCACGATGGCCCGGTCGTTCTCCGGGCGGACCAAGCCCATGCGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2511-4183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCST010000130.1 Acrocarpospora sp. H8750 NODE_130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2511 29 100.0 32 ............................. GGCTACTCGATCGGCATCAAGGACGCCCAGGT 2572 29 100.0 32 ............................. GGCTGCTGCCGAATCCTCCCGCCGCCGAGCAG 2633 29 100.0 32 ............................. GTAGCGAGACATCATCAGGTCCAAGCTCAAAG 2694 29 100.0 32 ............................. AGTCCTGGGTCACCTGCACCCCGCCCGACCAG 2755 29 100.0 31 ............................. ACCCGCGCGGCATCCTGCGCGGCGAGCGGTG 2815 29 100.0 31 ............................. ATCGATCAATACCTGAATGGTTCTTCCTGGA 2875 29 100.0 32 ............................. CTGTACGACCCTCCGGCGGATGGGGCCACCCT 2936 29 100.0 32 ............................. CATGGGACGGGGCGCTCGACGCTGAGCATCCG 2997 29 100.0 32 ............................. TAGCCGCCGTTCTTCCACCGGTCCAGGGACCG 3058 29 96.6 32 ...................C......... TTGTCAGGTAGGGATTCGGCGGGGCCGCTCAG 3119 29 100.0 32 ............................. CCCACATCCTCAACGACCTCGTCGCCCGGATC 3180 29 100.0 32 ............................. TACGGGTCACCGTCGACGGGCAGGCGGTGGGT 3241 29 100.0 32 ............................. TCGCGGCTTCACGCTGCCCGTCGTGACGGCCA 3302 29 100.0 32 ............................. TCGCGGCTTCACGCTGCCCGTCGTGACGGCCA 3363 29 100.0 32 ............................. CTCTTTGATGAGGAGAGTCATGTCCTGCTCAG 3424 29 100.0 32 ............................. CCTCTATGTCGGAGGCTGAGAGGGCAATTGCC 3485 29 100.0 32 ............................. ACTCCATGAGCCCCGGTGTCGGGTGTGCGATG 3546 29 100.0 32 ............................. CAGTTGTAGGCGACTTTCAGCAACTCCGCCGA 3607 29 100.0 32 ............................. CCGGTGGACGGGGGCGACCGTGGCTGAGATCA 3668 29 100.0 32 ............................. GCGGCAGGGCTGCGCCCGCATGCCGCCTATGG 3729 29 100.0 32 ............................. CTCCCGGAGAGGAAGGCCCTCCTTGGCTGCGA 3790 29 100.0 32 ............................. GGCGAGGTCAGGACCGTCTTCGCCACCTTCAA 3851 29 96.6 32 ..........T.................. CGGGAACGGAACCCTGACCCGTACTGGGCTGC 3912 29 100.0 32 ............................. GGCGCCGACCTCTCCGAGGCCGACCGCAAGGG 3973 29 100.0 32 ............................. ACCGGCATGAGCGGCGGCGACCGCCCCTACCC 4034 29 100.0 32 ............................. GCAGTTTCGATCAGGAATTGCCAATCCGTGGC 4095 29 100.0 32 ............................. AGAGCGCCGACTTTGGGACCCTCGCGTCGGCC 4156 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 CTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : CAGTACGACAGAAGGCACCGGGCCTCGTCTTCGTCAGACTTCAGTTCCGCCGAAATCGACGCCCGAAGCCCAGCCGACAGGTACTCATCCCACAACGCCTCTGCAGCAGCTGCGGTATCCAGCAGATGGCAGACCAGCGGATAGGGCGTCGGCAGCCCTCGCGACTTTCCCCACAAGGCCAGGTCGACATCCGACCCACTCATCTGAACCCCCAATCCTGAACGTCATCAATCAGCAAGCACAGTTGATCACTCCATGCTCCACGAATGCCCACTATAGAGCCAGCCGCCGACAATCCGTCAGAGATTTACAGAACATGAGAATTCTTCTCATAGAAAATGCCACCATAAGCCCATAAAACACCACAACTCATGCTTCGAACCGCCGCTGTGTTCCGCCACAAGCGCTACTACAACCCTCTCAACACTTTTTCTCGATCACCGACAATTTCCGACATTCACGTCACTGCAGGTCAGGTGTATTCTCCCTGGTAGGGAAGT # Right flank : CACATGCTGGGCTCGACCGCGGTCCCGTCGCACTGCTCTCCACGCCCGTGTGTCAATGGCCGGGTGGTCCTGGCTCTGGCACAAATTCCGGATGCTGTTGGTGATCTTTGTAGTGTCTGGCGTTCTTGTTGAGTCCATGGTTGTCTGAGGGTGATTTCACCGCGCCGTTCTGTAGCCGTTCTGCGGAGGTGGACGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //