Array 1 166581-164596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVR01000081.1 Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 166580 33 100.0 33 ................................. ATACGGACGCTGCATACAACAACGTTAAATCAA 166514 33 100.0 34 ................................. TGACGCAGAATTAGCGGATTGGATATAGACGTCC 166447 33 100.0 34 ................................. TACGAATCTGAATTAGATGGTATTCAAGTCGACT 166380 33 100.0 35 ................................. CATGTCGGGTATACACGTACAGCACCAACACCCGC 166312 33 100.0 33 ................................. GACTTTATCCGGAGTATCTACGCCCATAATACC 166246 33 100.0 33 ................................. TTTTACAACCGTCTTTGTTGTATCTCAATACCC 166180 33 100.0 33 ................................. CGATATGATGATGATATATTTACGCTTACGATA 166114 33 100.0 36 ................................. CGCAAGCTGCAGAATGTAAACGTAAATCTGACGAGA 166045 33 100.0 39 ................................. CGGAATCTCACCGTTGTATACTAATTCGGCTTGCCGCGC 165973 33 100.0 34 ................................. GCAAATCCTACGTCGCCTACTACTATTCTGCCTA 165906 33 100.0 33 ................................. TTTTGTGAATGGAGAAGCTGAAACTGAAAATAC 165840 33 100.0 36 ................................. TAAAACTGTTGAATCTGTAGCAGATTGAGCCATACG 165771 33 100.0 33 ................................. TATTCTCGATTATCTTTAATGTAGTTGAATACA 165705 33 100.0 33 ................................. AGTAGTTGAATCTTTTTCATCAGCTGCATAGGT 165639 33 100.0 34 ................................. AGAAAGGTCACATATGTATTTGACAAATCGAATC 165572 33 100.0 35 ................................. TTTTTGGTTTGTATCTTTTAGACTCATGGGGTACG 165504 33 100.0 34 ................................. TGGGGCAATGAATTTAATGAGTTTGTAAAAGCTG 165437 33 100.0 39 ................................. AAACTGTATTAGACTACGAAATGTTGTTTGGGATGCTGA 165365 33 100.0 33 ................................. AAACTCTATATTTCGTTGACAGTTACAGACAAG 165299 33 100.0 34 ................................. AGCGTAATGTTGAAATTAATCACATAGCGATTGT 165232 33 100.0 35 ................................. TCCCTCACCATCTTCACCATCTTCGCCGGGAACAG 165164 33 100.0 33 ................................. CTAAAACAAAATATCGTGTTTTTGTACAGCGAA 165098 33 100.0 34 ................................. ATAGCTTCTTGAGCTTTAGCATGACGTGTTGTAT 165031 33 100.0 34 ................................. GTGAACGTGATCGTTTCAAAATAATGAAGCGAGT 164964 33 100.0 34 ................................. GATCATGTCCATGATATTTTTTCGCTCATAATGC 164897 33 100.0 37 ................................. ACAAGTATCACTATTTTTACAAACTATGTCGGCTGTG 164827 33 100.0 33 ................................. CGAAACGCAAAAAGAGGAAGGTATCCCCTTCCC 164761 33 100.0 34 ................................. ATTGCCCTGGGATTTTGTTGCTATGGTCAAACTC 164694 33 100.0 34 ................................. ATATCGATTATTGCATTTTAAACATCTGAAACGC 164627 32 78.8 0 ...........C.......T.A..C-..A...A | ========== ====== ====== ====== ================================= ======================================= ================== 30 33 99.3 34 GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Left flank : AGAAGAATATCCACCTTTTTTATGGAAGTGAGGTTTTGATATGCTAGTATTAGTCACGTACGATGTCGTCACGAAAACGGCTGCTGGTCAAAAGCGACTACGAAAAGTAGCAAAAATCTGTGAAAATTATGGGCTACGTGTCCAAAATTCCGTTTTTGAATGTGTTGTCGATGCTACGCAATTTAAACAACTTCAACTTGCTCTTCAAGATAGTATTGATGAAAAAGAGGATAGCTTGAGGTTTTATCAGCTAGGCAACAACTATAAATCCAAAGTCATCCACGTCGGTGCTAAAGAAACATTCAATGTAGAAGATACGATAATTTTATAAACAACATTCGGTGCGGATGCAAAGCACACATAAAATCCCTAAAAGATTCGCACCGATTATTGCCAAGATTTCATTGGGGAAATATAGTTAATTGGGTAAAAAGTAAAGATAAAAATAAATTAATTGGTAAAATTATATTGAAAATGATCTCTATTAGTATAATTTTGCA # Right flank : AGGCAGTTCATTAAAATCTAAAACCCCGATACCAACCAAAAAAACGAACAGCGTACCCTTAACCGCTGTTCATTTTTATTGCCTAAAACCATGCCACTTTCATGAAACCGTCAAACATTCCAAATAAACGTCTGCATATTCCAGCAATTTTACACAAAATTGAATAAGCACAAGCATGTTCGGTATATAAATAGGGTACGAACATTTTTTGGTTAGGAGTGTGTAAATGGCTGTACTTGTGGTGAAGAGGAGTATTATGCATCGTTATCAAAGTATTGGGCAGGCGATTGAAGAGGCGGCGCCTGGGGATATGATTGAAATTCGGGATGGGATTTATGAGGAAAGCTTGGATATTGCCAAGAGGCTGACGTTGTATGGGGTTGGCAATGTGACCATCAAGGGTGGCGTTTTTATTCGTTATCAAACACATGTGGCGATGCGTAATTTACGGTTTCGGCAAGGTCAGGGGCTGTATGTGAAAGGTGATTTACAGCTAGAGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 178068-175263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVR01000081.1 Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 178067 33 100.0 33 ................................. CGCCAATTTAAGCTAGATAAATACGAAGGAAAG 178001 33 100.0 33 ................................. TTCAATATGCGTTATAGTAGCGTCAATTATCGC 177935 33 100.0 33 ................................. CGCATTTACTCGTACATCACATTCCATATAAAT 177869 33 100.0 34 ................................. GATAACGGAATCGACGAAGAATCCGATGAATCAT 177802 33 100.0 34 ................................. GATTTCCCTCTCGATCCAATCCGCCCATTTTTGC 177735 33 100.0 34 ................................. GGAAATACGAAATCGTCTGATAGGCCTAACGCCT 177668 33 100.0 34 ................................. AAATTTTCGTAGTTTATTATCGATGTACTCACGC 177601 33 100.0 33 ................................. CCATGTAAACTACCGCAGTCTTAGCGCCTTTCG 177535 33 100.0 34 ................................. GGTTGCTGCAGCAGTTATCGCGACGGTAGCCCAT 177468 33 100.0 33 ................................. TCCTTTTCGGTAAAATAGCGTTGGCATTTAGCG 177402 33 100.0 33 ................................. TGGCGCTGTGAAATGGGCTAAGAACTTAATTCC 177336 33 100.0 33 ................................. AAAGAAGGCGGATTTAGAGGCGTACTTGAAACG 177266 29 87.9 8 .............................---- GTGGATTG Deletion [177238] 177241 33 100.0 34 ................................. TGCGCTTTTGCCATATATCATCGTCCCTTTCCGT 177174 33 100.0 35 ................................. ATATACTGATTTACATACTGAACGTTCTTCATTGC 177106 33 100.0 34 ................................. TTCTTGACCTACTGGGCAGAAGAAACTGCGAGTA 177039 33 100.0 33 ................................. AACAACGGTACGACCGTCAATATATTTAACAGT 176973 33 100.0 35 ................................. GGGTACAATGCCGAATCCTTTACTGAATATGACTA 176905 33 100.0 34 ................................. TTAGTGGGAGCATTTGCTTTGTTGCTATTGCTAG 176838 33 100.0 34 ................................. TTTTAGATACTGTATTAGAAGTAATATCATCTGA 176771 33 100.0 35 ................................. TTTAGGTTTTTCATTAAATAAATCAATCCCAAGAT 176703 33 100.0 33 ................................. AAAAAATCTAAAAGCTTATCAAAAAAACCAAGG 176637 33 100.0 33 ................................. TATAGAGGAAGATTAGATAATCCCCAAATATCT 176571 33 100.0 35 ................................. AAGAAACATTTATCAATTATCGAATGAGTACCGAG 176503 33 100.0 36 ................................. CCTATGTCTTTCTTTGTCGTAATATCGACCATCCTT 176434 33 100.0 34 ................................. GTAAAGTGTTTGATTAGCAGAAGGACTTGTAAGC 176367 33 100.0 33 ................................. TACTATATGCAGTTGTACCGTCATAACCACCTG 176301 33 100.0 34 ................................. AAGTAGCCCCTTGTCAATAGCCTTTTCGGATAGC 176234 33 100.0 35 ................................. TTCCATTGCTCTATCTTAAAGGAGCTAATCATTTT 176166 33 100.0 33 ................................. ACAACTCTGTTATCGTTGTGGAGTTGTTTATAA 176100 33 100.0 35 ................................. CCATTAACATTTTTAGCTGAGTCAAATATATACTC 176032 33 100.0 34 ................................. TAAAAATAGATGTTGCAATACTCCCTATAGTTTC 175965 33 100.0 35 ................................. TACAACTTCTAACGGAAACTCTAAATTAGATTCCC 175897 33 100.0 33 ................................. ATCAAATAAACTCTTAAACGATACTAGGGACTG 175831 33 100.0 34 ................................. TTCTTGCATTTGATGTGATGTCTAGCTTGTCAGC 175764 33 100.0 33 ................................. AAGTCTCAAGTTAAAGAAGAACGCACATTCCGT 175698 33 100.0 34 ................................. TCTTTTGCTCGTACTGGTGCTGTTAGTATCCCTA 175631 33 100.0 35 ................................. TCCTGTTCATAACGGTCCTTTTTTGGATTATCTGA 175563 33 100.0 35 ................................. ATGTTTAGTCCAATCTACACTTGGCCATCCGTTAA 175495 33 100.0 33 ................................. TTTCATGCGGATTAGTTTCGCTTGTAGCTTTTC 175429 33 100.0 34 ................................. CCACCATTAGTAAATCTGGCTATACCACCTCTAG 175362 33 100.0 34 ................................. TTATTACAGCAGGCATTACTGTAGCATTAACTAT 175295 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ==================================== ================== 43 33 99.6 33 GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Left flank : GGTCACGACGCAAGCCACGAGCATGAAGCATCTGCCTCGAATGAAGCAACACTACAATATGTGCAAATTAGCACTGCACAAGTGGTGAAAGAGGATGCCAAAGAAATGGAGTCTTCGAACGCTACACCAAGAGAAGAGCAACAAGCAGCCGCAGCAGATGACACAGCATCCAACTCAAACACAGTATGGATGATCGCCATCCTAGCAGCCCTAGCCGCTATTTTTGTTATTGTATTTGTGAAACGCAAGAAATAATGTAAATGAAAAGAACCAGCAATGACCGAGGGAATTCGGTTGTTGTTGGTTTTTTTAATAGGGAATTATTGCTATAATAAGGGAAAGTGCGGATGGTAAGCGAACATGATTTTATAGCACGATTCGCACCAGATATATTAGTGAAAATGCTTGTTAGATAAAACTATGTTAGTTTGAAATGCTCATGTATATTTACGGAATGATAATATTAAGTACGTTATATTAAAAATTTATTCATTTTTGCA # Right flank : CCATTTAACCAAACTAGCTTGCTGATTTGCTCTGTCACACTCTGTATGAAGAGTTAAATCATTTGTCAGTTGAGCAAGACTGTTGTTATTGTCACTGAGAGTGTGAATTGAATTTGTTATCAAGAGGCGGAAGATTTAGATAATCCCCGCCTTTTTTTGAGTGAGAGAAAAATGATAAATTCTTTTTGTATAGGTCCTTAGACATCTGTTCGAAGGTTTGGTATAATTGTTTAAATATTACAATTTTTATATAAGAAAGAAGGGAATAGATGTCATCTGTAGAGTTTATTGCGCATATTCGAGCGAGCGATGGAGCAGAGCAACGGTTAGTGGATCATTTAAAAGAGGTTCAAGCTTTGGCAGAGGAAATTGGACAGAAAATCGGCCTTCCCCATGTCACTGGCCTTGCAGGAATGTTACATGATATGGGGAAATTTAGCCACGCATTTCAGGAATATATTCGTGAAGCGGCTGCTAATCCTGAAAATCCACCAAAACGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //