Array 1 251788-251233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQO010000013.1 Nocardia abscessus strain BJ06-0146 NODE_13_length_261480_cov_23.042360, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 251787 29 100.0 37 ............................. CAGCACTGCGATCAACGAGCCTGTGGAGCGGGCCAGG 251721 29 100.0 35 ............................. CTTGGTAGTCAAGGTGATTCGCCCCCTAGGGTAGG 251657 29 96.6 38 ..........T.................. CCGCTCCATCTTCTGCACTGCACCCAAAGCGTTGCCGA 251590 29 100.0 38 ............................. CCGGCGACGAACTCGATCACCGTCACCGACACGGTCCA 251523 29 86.2 36 .........................AACG TGAGGATGCGCTCCATCTCGATGTGTCCGGTGGCTT 251458 29 100.0 35 ............................. ACCGATCAGGACGAACCCCTTGTTGGGGCGCCGAA G [251443] 251393 29 89.7 39 .....AG.....A................ CAACAGCCTGCTTGTCGCCGGCCACGGGTTTGTGACGCG 251325 29 96.6 35 ...............T............. CGCGGTGGAGCGCGAGGCGGCGCGGATTCTGGTGT 251261 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 96.2 37 GTCCTCATCGCCCCTGCGAGGGTTCGCAA # Left flank : TGCCCTCCCAACTGCATCCCATGGTCTGGGCATCCGCAGCTGATCACTGGACGTCACACCAGTACCGTGTCGCGGTGGTTGAAGCCGCTGAGGGGCTGACGATCCATTGGAAGACCAAACTCGGCCGCAACGATGTTGACGGCACCGAGTTCTGGCAACAATCCCTCTCTCCTGGGGAGCCGACCCCCGAGCGTCCGAAACTGCACTGGCCCGGTGATCGCACCGACAAGACGGTCCGCAGCATGCGCGGCGGACTCGAACCGATGGCACGCGCGCTCAATGACCTGGCAACCGGGCTAAATCTGACGGTCCGCAATGTTGCGACTCATACTCGTGAAGAACTATCCGAGCAGGAAGCCCTGGAGAGGCTGGCGGCGTACAGCTATCTGGCAAGGCTCCTCGACCAGTGCGAGATCCGCCGTGCAGACGATGAATGAGGGACCTAGCAATGGGACCTGCCTCCCAGTCGGTCCGCTGCGGCGACGCCGACGGGCGAGCGT # Right flank : TCGGTCGATCCAGTCCGGCCACGGCAGCGGAAGCTCGCGTCGAGCTAGAACACATGTTCGATTGGCTGTATGGTCGGGCTATGCCCGAGTTCAGTCGACTCGATTTCGCCAAGATGCAGCTAGAGGACGTGCGCCGCCACCTGCTCGACGCCGCTGCATTCGGCAAGTTCGTCACGCCGGAACAGCTAGAGATCATGGCGCGAAAGCTCGCCGAAGGCCTGCGCATCTACACCGACGCCACACAGAGCAAGGAATGACAGGAGCCGACGATGAGCTGATGACCACCGACCAACAGGCACTTGTCCGCGCGGTGGTCGACGCGATCAACACAGCAACGCGGGAAGTCACGGCCGTCGAACTCGCCGGGTACCTGGCCGGGCGAATCGCACCGGCGCCAAGTCCGGAAGATGTGGCGGCAGTGATGCGGATTCTCGCGCTGCCCGCCGTCGCGTTCCGGCGCGGCGAACCAGGGACTATCGTGCTCGCGCGAATACTGGACG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 105711-104771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQO010000019.1 Nocardia abscessus strain BJ06-0146 NODE_19_length_188277_cov_21.973952, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 105710 28 79.3 91 ..T.....A....-..GT..........T CACATTCGCACCACCACGAAGCGACCAACCGATCCCGAACGAAGTGAACGAAAAACGGGGTAATGTCAGATAAATCCGCAGCTCAACAAGT 105591 29 96.6 32 ............................T TCGCTCAGGTCGCGGTCAAGCGCATCACCCGC 105530 29 100.0 32 ............................. CCCCGACGCTGCGGTCGGCGGGCTGGTGGCGA 105469 29 100.0 32 ............................. TAGAGGCCGACGAATTCGGCGTGCAGGGCGGC 105408 29 96.6 32 ............................T CCGTCTCCGGATCTCCGATACCGAGCCGCTCG 105347 29 100.0 32 ............................. AGCACCGACAATTTCGGGTTCGCGGCGTGGGT 105286 29 100.0 33 ............................. GAGATTGCCGCCATCCGCGCGGCCCGTCAGAAG 105224 29 96.6 32 ............................C TGGGCCTTGGCTACCGCGGTCTGGGTGGTGCC 105163 29 96.6 32 ............................A CGATCCGTTTTACGTGCTCGAATTCGTGAATC 105102 29 93.1 32 .............C..............A GGAGACAGCGCAATGCGCGTGCTACGACTGGC 105041 29 93.1 30 ...................A........C CGGCCCGCCGCTTCGGGATGCCCACGGCTC 104982 29 96.6 32 ...........A................. CGAATCGCGGATCTGGAGCGCACGGTGGATCG 104921 29 96.6 32 ..........T.................. TGGTGAGCGGCTGGCGCCCGGCCGAGGGCGGC 104860 29 96.6 32 ...T......................... GACTCCAACCGGGCAACCGGTATCGAGATCCA 104799 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= =========================================================================================== ================== 15 29 95.9 36 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : ACCGCGACTTCGAACGCGCTTCCCATAACATCCGCACTGACATGAGTTCAGCCGACCTCGCCCTGCGGAAACTGCCCCGCCCCAGGTTGGTGCTCTCCGAGCACACCCGCGATCCGGGTGGCCGAGGACTGGGCGCTGCTCGATGCCCTGAATGCCGATTCCGCCCCGGAGTGGGCGCGATGGCTGTCCACGCATTTCCACCGCTGGTTCGCTGTCAAGGACGGCTCCTGGATGCACGACCCACTGGCCCTTGGCACCGAATACAGCGCAGCAACGCCGGGCGTGCATCGGCCCGCGCGCGCACTGGACGAATTACCGACGGCTGGCCGAGTTGATCCGCGAATACCTACGCCAAGTCGCGGAGCGCGCCGACCGGTAAGCGCAGCCGCGACATAATGAGCCCGGACGACACCACAGTCCGTGCTCGTCTCAGTCGTTCCCGCATGTCGGATGCGGCCCGGACTGAGGAACTCCGGCCAAAGGCCAGCATCCGCAAGCGC # Right flank : CTGTAGGAGTCCAGCGGGATCCAACGTTGCACCATGCGTGATTCGCTCGTGCCCGGCGTGGTTGCTGGTCAACCATCGCTACTTGTCATCAAAATCGCCATTTAATGACTGACGTCAACCAACGAGACTCGCACCCGCCAACGCCAGCAATCCATGCTACAGCGGGGTGGGTGGGTATTGGAAGTATCCGCAGCTCAGCGGCCCAATGCAGCCAACTGACTTCAACGCGGTCTGCTCTTGACAACGATGCCAATCGCAAGCTAGCGCGATGTGAGTACATGGAGTTACCCATGTACTTGCGAAATCAGTTGCCGCCGTGGGCATCAATCCGTAACGCCCCGGACAATTTCCGCCTCGACCCTCGGCTCCGGCGGTGGACTGGAGCGGGCGTCCGGTCGCTCGGAGATCACCCGCATGCCGCTGCCGACGAAGACACCGCCGCGCTCGGCAGGCCGGTGTGGTCGACCAGAATTCCCACGACGCGATAGCCCCGTCCGCCC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 113921-113224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQO010000020.1 Nocardia abscessus strain BJ06-0146 NODE_20_length_127237_cov_23.841547, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 113920 30 96.7 37 ....G......................... CCGGCACGGCGGCGGACTGGTTCGCCGCGCTTTCACA 113853 30 100.0 37 .............................. TCATCGAACCAGCGCGGGCGCTCAGGTCGCGTAGCGG 113786 30 100.0 36 .............................. CGGTTCGATGTTGCTGCCGAGTCTGCGCGACGCCTA 113720 30 100.0 35 .............................. GCCACCGCCCACAACGTACTGACGCTCTTGCAGGG 113655 30 100.0 34 .............................. AGGACCGCTCCCGTGTCGTACCCGCTCGGCGCAC 113591 30 100.0 38 .............................. TCGGCAAAGGAATTCGTCGGCGCCCTCGACGAGCTCGG 113523 30 100.0 39 .............................. TGGCCATGCGCAGGACACGGTCGCCGCGGTCCTCACGAA 113454 30 96.7 36 ....................T......... CAGAAAAGAGCGCCCAGTGACCACCGCGCCAGTGTT 113388 30 100.0 38 .............................. GTCGCCGGTCATCAGCTTGACGGCGCGCCGATGCTCGA 113320 30 100.0 37 .............................. TAGTCCCAGCCTCGACCGGAACGGACACCGGCAATGA 113253 30 96.7 0 ........T..................... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.1 37 GTTGCCAACCCTCGCAGGGGCGATGAGGAC # Left flank : GCCATAGCCGCTGTCGTGGAGCGCGGCTCCCAGCTCTGGCGCAGACCCTTTCAGCAAGGTATAAACCAGCGCCCGCCCAGGGGCCAGCACATCGTCCCACGCCAACTCGCGGGCTCCGGTATGGAACGTCAAACGCAGACGCATTACGGCATTCCTCGACAGGTTCGGATCTCTGGTATCTGGAAGCTGGGCAACGCAGGTGCGGCCACGCGGTCAATCTCGCCAACCGCGCTTCGAGAAGTCCAAGGACGCTGCACCGCAGCACTTCTCGCGCAGATACGAATGCCCACTCTCGGCCTCACCAACGCCTCCAATCCCAACGTGAAGCAGCATCGGCCACCGTACCGGCACCCACCGACAAACCACCGCCGATCACACAACCAACCCTCAGTCGGTTTACACCCCCGCTCAGCCCCAGCGGCAAACCACCCTACGACGACGCAGCGTTCTACCTACAGATCGTTCTATCTCCAGATCGCGGGACCAGCGGCTAGGACAAA # Right flank : CCGTGACCGGTTCCATCCGGGCGGGAAGATCATGTTGTCGCGTCCGGCTGAATACTGGATCTGGCACGGTTTGCGTGATTGACACGACCCGGATTGCCAACGCGCGCTTGATAATCGATCATGTGGCCGGTGTTCTGATCTTGGACCGATGGCGGTCCTGTTCCCGCATCTGGATGGGCTGAGGATCGACGGTGTGGACTCGGCCGGGGTTCGGGTGCGAATCGATGCGAGGACGGGTGACGAACCAGCCGTGTGCCCAGGATGCGGCGCGTTGTCACGCCGAGTCCACAGTCGCTACGGACGCCGATTGTCCGACACCGCGATCACCGGCAGGGAGGTGGTGATCCGGTTGCGAGTGAGGCGATTGTTTTGTGACAACTCCGACTGCGGGAGAAGGACTTTCGCCGAACAGGTGCCAATGCTGGCAGCGCGGCATGCGCGGCGCACCGCCGTCCTGCAACGCCTGCTGCGCGCGGTCGCACTGGCCTTGGGTGGTCGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCAACCCTCGCAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //