Array 1 1021896-1017078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016893.1 Thermoanaerobacterium thermosaccharolyticum strain TG57 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1021895 30 96.7 35 .............................C TTAAAGAGAAGATTAATCTTCTCTTAATTTTTCAA 1021830 30 96.7 36 .............................C TCAAAATAAAAATACTTTTGAATAAATTCTTTTGCT 1021764 30 96.7 37 .............................C GTATAAAAAAATTTTAAAGGAATTAGGTTTTAAATGG 1021697 30 96.7 36 .............................C ATGAAGATGAATGAGCAGTATAGAACAGTAGAAGAA 1021631 30 96.7 36 .............................C ATCGATAAATAATCCGTCTTTCCCTTCGCTGTCTAA 1021565 30 96.7 38 .............................C CTTGGTAAAACTAATATTCGTAATACGCAAATGCTTGC 1021497 30 96.7 37 .............................C ACATCTAAGTAACCCCAATCTAATATTTCATCTACAT 1021430 30 96.7 36 .............................C AAAATAAAAGCCTGTTTATTTAAACAGGCTTATAAA 1021364 30 96.7 36 .............................C TTGGGACTGGTATTCCCAACAAATCGGATATTACAT 1021298 30 96.7 38 .............................C AAATAAATAAAATTTAAAGTAAAAAGGAAGGATGATTT 1021230 30 96.7 37 .............................C TAGAGGAAAACATCAATCATTCGGTTTCACCTCTCTC 1021163 30 96.7 37 .............................C TTACGACTGTGTGGAACAGTATCACGCAGACCATCTC 1021096 30 96.7 35 .............................C TACCCATACGCTGTTATTTTATACATTCCGTTAAA 1021031 30 96.7 37 .............................C AGTATTGGAGGTAGTTTTGCGTTTACTGCTGCAATTT 1020964 30 96.7 37 .............................C TCGACCAAAAAACTAATATTGAATACGGCTTGAATTT 1020897 30 96.7 38 .............................C CGCCTTCAGGTAAAGTAGTAGTACCTTCTGGTAATCTA 1020829 30 96.7 38 .............................C ACCGTTTACATTTTTTTGAGTGGATCTTTTGTATATGT 1020761 30 96.7 37 .............................C CTTGAATTTACTCTTGTTTTCTTTCTGTTATTTCTGC 1020694 30 96.7 36 .............................C CTTTGAAAAAAGAATAGCATACGCAAAAGATATTAG 1020628 30 100.0 35 .............................. TAGGGCCTCTATAGTTTGTAGACCACTTTCTGACT 1020563 30 100.0 36 .............................. ACCTGCCGATATGAATAGAATTGAGCAAAATGAGGT 1020497 30 100.0 36 .............................. GCAAATGCACGTAAAGCATCTATTTCTGGTATACGC 1020431 30 100.0 36 .............................. TTATTATACCTCCCACTATAGATTTGTAATAACTTT 1020365 30 100.0 38 .............................. CTATGTTTCCCTGCTGATAAAATTTCTTTATTGTGCCT 1020297 30 100.0 37 .............................. TGGCAATAGATGTCTATTTCGTAGCCTCTGCCACCTA 1020230 30 100.0 38 .............................. AGCCTTAATTCTTTAAATCTTTCTCCAAATGTAGGCAT 1020162 30 100.0 36 .............................. TTGTTAGGCATTGTTCCAGTCTTTTTACTTCCACCT 1020096 30 100.0 37 .............................. TTGCTTTCCTAAGTGCTATTTCTGTTTCGGGTGAATT 1020029 30 100.0 35 .............................. CAACAACACCAAAAACTGTCGAAAGTGCATTGCAG 1019964 30 100.0 36 .............................. TGACATTACAAATCCTGATGCTCACAGCATGACATT 1019898 30 100.0 36 .............................. CATTGTTTATATAATCATATTCGTTTGTTGCTTCAG 1019832 30 100.0 37 .............................. AAAATTTCATGGCTGTCGCTTATTATCGGCAAACCTA 1019765 30 100.0 36 .............................. GTATAATTCCTATACTGGCTCTTTTTTTTATATTGA 1019699 30 100.0 37 .............................. AAAAATACAAGAAATGGAGGAGTGCAAATGATACAAG 1019632 30 100.0 36 .............................. AAAATACCATTGTTTGTATTATCGTGTGCCCATGAA 1019566 30 100.0 36 .............................. TGGGTATAAATTTAGCTACTGCAATAGGTCTTATTA 1019500 30 100.0 36 .............................. TTTCGCTTGCTTCTTCTATCCATACATCAGTTATGC 1019434 30 100.0 37 .............................. ATGTGAAAATATTTTTTATATGCCATCCTTCTCCACC 1019367 30 100.0 36 .............................. CTTTTATAACCAATAGATAAGGTAAAAAATTTTTTA 1019301 30 100.0 38 .............................. TGGGGTTGCAGGGGGACGGAGGCTCGATGTCAAGGTTT 1019233 30 100.0 35 .............................. CTAATGACATGATACGATTTACCACTACCAGGCGT 1019168 30 100.0 36 .............................. TACTGACAGACAAGAATACATTCATAGCCCAATTTT 1019102 30 100.0 38 .............................. TATTATCGGTCGTTGCAATTAGGCTATCAATGTATTTC 1019034 30 100.0 38 .............................. AACCATGTAAGTATGAATATAAAAAAGAAACTTTTTAT 1018966 30 100.0 36 .............................. TATCTCCAAGCATAATATATTGTATCGCCTGTATTA 1018900 30 100.0 34 .............................. CATTTCATATAGATTTATATATACGTTTACGTGT 1018836 30 100.0 36 .............................. CAGACGCGCAGAGAACTCTTGTAATAGATCAAGCTA 1018770 30 100.0 38 .............................. TTCGCATGTATAACTGTACTAAATCACCCTGGTTGACA 1018702 30 100.0 36 .............................. CCCGCAATAGCATTGCCTATAAATCCGACGGCACGC 1018636 30 100.0 37 .............................. CGAATTTTCATTAAGATTGCACGTACTGCTGAATCAA 1018569 30 100.0 35 .............................. ATCTATTTACATCTAACATATAAATTGGTGCACAA 1018504 30 100.0 37 .............................. CAAATTCCTGTTGCATCAATTTTTCCTGTTCTTCTTC 1018437 30 100.0 37 .............................. TTTCCTCATCGCTTAATGTTATTTTTTTACTCATTTA 1018370 30 100.0 36 .............................. ACAAAACAACAAGTAGGTGACAACAACGATATACCA 1018304 30 100.0 36 .............................. TCCTCTAAAAAAATCCACCTTTTTTGCTCTTTTATC 1018238 30 100.0 38 .............................. TGTCAATAGTTTATGCAAAAAAATTATTATTTTTTTAT 1018170 30 100.0 35 .............................. TCCTTCTGCTGGTGATGTTATTTTGCCTTCCTCTG 1018105 30 100.0 37 .............................. AAGCATGATAACTTTTCCCGCTTCCAACACTACCAGT 1018038 30 100.0 37 .............................. CCTATTTCACATGTACATCTTGCCGCATATTCTGCTT 1017971 30 100.0 37 .............................. TCTCCAGTGCTTTCCGCTATATCTTTTATAATTGCAT 1017904 30 96.7 36 .............................C ACGACATGAACATTGATTTTAGGCTAGTACCTGCGT 1017838 30 96.7 36 .............................C TATATGAAGTACCTGCACAGTATAGGCAAAACGGTG 1017772 30 96.7 36 .............................C CAGAATTGAAAAAGGCTGCCACAATAGATGTGGCAG 1017706 30 96.7 36 .............................C ACTTTATTCTTAAATTGTGGACTTAGATTATCGGAA 1017640 30 93.3 37 .................G...........C TGTTTCACTGCATCGTTTTTCATGTCTAAGTATTCAG 1017573 30 96.7 37 .............................C TTCCAGAATATAACTTCCTTGCCTTCCTCTCGAAGGA 1017506 30 96.7 38 .............................C AATAAAATTTTTAAATTTTTTGCAACAGTTATACCGTC 1017438 30 96.7 38 .............................C TTTACAACTATCATCTTTCCATCGCCTCCATTTTCTTT 1017370 30 96.7 36 .............................C GGCCTATTTCATGCGGTATTGAGTTTGTAGGCTTTC 1017304 30 93.3 35 .................G...........C GCACAAAAGCAAAATGTGAAGTGTCACTAGCACTT 1017239 30 93.3 37 .................G...........C GCCATACCTGGTATCCAGTTATGATACGCAATCTCAA 1017172 30 96.7 35 .............................C GCAAGTATATAAATGTAGCTGTTAGTTACATCAAG 1017107 30 83.3 0 .................A.A.G...T...C | ========== ====== ====== ====== ============================== ====================================== ================== 73 30 98.2 37 GTTTTTAGCCTACCTATCAGGAATTGAAAT # Left flank : ATAGTGATGATGGTACACCAAGCATAAGCAAATTTAAGCTTATAGATGACGGATATTATAAAGTTGATGCATATATAGAATATAATGATGAGGCAATTGAACTATGGCAAAGATATTTAGAACTTAAAAATGTAAAAAATCTTTTTAAAAGAAGAAACATATTTAATGAGTTTAAAGCTGATTTTTATAAATACGTAATTTCAATTCCAGAAAAAACTGAAAACATGCCGGCGGATGTAGAAGGTTTTAAATATGTAAACAGTGATTCAATAAATGAATATTATGATAAGGAGACGGGATTTATAACAAAAGGTGTTTTAAGCATCTGGTAATAAGATGTCGTCGATGTCCAATAGTGCAAAAAGTGCTGGAGATCGACGACATTTTTATTTTTTAGACACGTTGAATTATCTGTGTTTTATGATATAATAAGGTTGTAAACTTTACATAAATAGTATTTTATATTTTAAGACTTTGTTGGATTTTAGGCATTTTAACGA # Right flank : CTAAGTTATAAGTTAATTGGAGGATTTTTATGTTTGAATTCATAAAATTGCAAAGAACAATGTGCTATGGACCTTATCCCGTTTATAATGTGACAATAGATAAAGGCGGCAATGTAAAGTATTATGGGGAAATGTTTGTCTATAAAAGTGGAGAACATCACTGGAGAATAACAGAGAAGAAGGTAAAGCAATTAAATGATGTAATTGAGGACTTTGGCTTTAGATCTTTTGTATATATATCAAGTTGAAGAGAAAAATGAAGAGCCATCAAATAGATATATAGTTATCACTGCTTCAAAAGAAGAAGCCATAGAGCTAGTAGAGAAAGATTGTAATAGGCAAGAATTACTGGAATGGAGTGTAGAGAAGATAGGAATTGCTACAAATCATTATAATTGCTCAGTTATACTTATGAAAGGTATCTAAAATTGATGAGCGCATTAGATATACTTCATGGTCATACGATAAAAAATCAGTTACACTGCTGGGAATTGAAATGT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1469252-1469412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016893.1 Thermoanaerobacterium thermosaccharolyticum strain TG57 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1469252 29 100.0 36 ............................. TAGTACAAGGCTTTTTGATAGGTCTTACTGCATGGG 1469317 29 100.0 38 ............................. CCATTTCTATCACTTCTTAGATAGCTCAACTATACCTT 1469384 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 ATTTAGTCTACCTATTGATTGATTATGCC # Left flank : TAGTCGATGATATCAGTATCTATAGGAAAATTCGCAATATTATATTTTATAGAAGCCTGTTTGCTTTTTGAGCCATGGTAAAATACATAGGCTGTCCTCTTTTATTTAACGCAAACATATGTTTGATATAAATATTTTACCATGGTCATTGAGGGTATTCAAGAATACTTTTTTATAAATTTTTTATTGCTTTTGTATTAAAGAAGAATATTACGAATAAAAGATAAGAAAAGAAGGATTTTGTAGGTTTATATAGAATAAAATATATGTTTTGAAAGATTACAAAACTTAAAACCTGTTGCAGCTAATACATATAAGGTCTTTATTTTTATCGTCTATCTTAAATAGTGTAAAAAATATATGAGATCGACGACATTATATTATTTTATTTTACTAAAATTTATTGAGATATTGCAATTTTATAGTTTTGTAAGGGCAAAGATTTGACAGTTATTTTAGACTTGAGTAAAATTTTTGGCTTTATATGGCTTTTTAAATGG # Right flank : CCTCACGAATCACGTGAAGCGCGTTGTTTCGCTCAAAAGAAAACACATTATTTGAAGCCGCTTGCGGCAAAAGGTTAGGGCATGTGGAATGGAATGATATGGGTATATTCCCGTGGATGAGCGGGGAAATCACTGAAGTTTTAATTGTGTTGTCTGGTATATTCTATCGAAATATTGTTAATAAAAAAACGGCTTTTGCTTGTAATTATTCGCATTTGCGAATATAATATTTTTAGGTGAACGCACAATATAGAGGTGTGAAATCATGGAATATATAACACCAAAAGATGCTGCTCAAGAATGGAATATTACTGTTCGCCGCGTACAGATCCTATGTGCGCAAGGGCGGATCCAAGGGGCAACACGACTTGGTAACATGTGAGCAATTCCTAAAGATTCCCCAAAGCCAAAAGATATACGTATAATTTGAAAGAGGTGAATATATGCAAACCCAACTTTATTTTTGGAAGCCATTAATAGAAAAATATAAGGAAGAATTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGTCTACCTATTGATTGATTATGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //