Array 1 47113-42868 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZA01000018.1 Campylobacter concisus strain AAUH-48UCil-a 1105900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 47112 30 100.0 36 .............................. TAGGAATATAGACCTTTTGGATAGTAGTTTGCGGAG 47046 30 100.0 36 .............................. TGTTAGAACTACCCATTTTATTTATCTTTTGGCTCT 46980 30 100.0 36 .............................. AGAGATAAGACTTGCAGAATAGAGTTTTGATGATTA 46914 30 100.0 36 .............................. TTTTCTAGTGCTTTTTCTCTTATAGTCCAAAGAGAA 46848 30 100.0 37 .............................. TCATATATAGATAATCCGAGTAGTTCATCTCCTCTTG 46781 30 100.0 34 .............................. TCATCATAAAACATTGCTTTGCAGCCGTTTTTCC 46717 30 100.0 37 .............................. ACGTCTGCCATCGAGCTTTCAAAATCAATGGCACTTT 46650 30 100.0 34 .............................. TCTTTCTTTCTTATATTGTGCTCTTTGTTGGCTG 46586 30 100.0 36 .............................. GCCTACATAAATATCGCTCTTGCCGCTGACTAGGTT 46520 30 100.0 35 .............................. TATCTAAAATTTTTTGAATTTTGCCCTGAATATGG 46455 30 100.0 33 .............................. TGGAAAATATTAACTCTACGCAAGAAAATACTT 46392 30 100.0 39 .............................. ACTTGGCTCCGAAAAGGTGTTTCGTCCAAACGGAGCCAG 46323 30 100.0 36 .............................. TAAGATGTTTAAAGAGAATTCAAAGCCTAGATTTGA 46257 30 100.0 38 .............................. GATCACTATTTTCGCAAATAGCTTTTATAAAGCGTTTT 46189 30 100.0 36 .............................. ATTTCTTTGGTTTCTTTAAATGGGGCAAAATTGTTG 46123 30 96.7 34 .............................T TATATGGTAGGTTAAAACGAACTACTTGCATAAT 46059 30 100.0 38 .............................. TTTATTGACGGCATCGGACTAATGGGCGAGGTCGTTGA 45991 30 100.0 35 .............................. CATCTAATCCTTGAAGATATCCTTTCTCAAAGTTC 45926 30 100.0 35 .............................. CATCTAATCCTTGAAGATATCCTTTCTCAAAGTTC 45861 30 100.0 37 .............................. GTTTTAAGGAAGCGACTATGCGAGCAAGGAATTTATA 45794 30 100.0 36 .............................. TATATAAAAAATGAATTACCTTCTGCCAATTCTTCA 45728 30 100.0 35 .............................. TTTTACTTGGGTTTCTTTATCTTGTTTTTGGTTGT 45663 30 100.0 35 .............................. TCATCATTGTTTAATAGTCCTTGATGAAGCTTATA 45598 30 100.0 34 .............................. ACTAAACTTAAGGACAAATCAGCAGAGGATATTT 45534 30 100.0 36 .............................. GGGCTAAAGTTTGCTGACATTGAAATATCAAGCAAA 45468 30 100.0 34 .............................. AACTTCAAATCGCAAATGCGAGCGAGAGCATCAT 45404 30 100.0 35 .............................. TAAGCAGGTTGATGAGCCATATAATGAAGTGGTAG 45339 30 100.0 37 .............................. ACACAAAGAGAAGGACATTTGCTTTGGAGTGGTAATT 45272 30 100.0 37 .............................. TAAGTAATGCATTTGTATTTTTCCCTCAAATTTTGGG 45205 30 100.0 36 .............................. CCCATTTATGCTTACCTGTTAATGGGTCTTTTACAA 45139 30 100.0 39 .............................. GAAATTATAAATATCCCATTTCTTCAAGAAGTTTTTAAC 45070 30 100.0 34 .............................. AATCAGATAGAGCCTTTTGAAGTGCTAAATGATA 45006 30 100.0 34 .............................. AAGCAGAGTGCGAAGCAAAGCTTTAAGCCGACAA 44942 30 100.0 37 .............................. ATGTCTTTGAAAAAAAAGTGCAGTGCCGACAACTTGC 44875 30 100.0 39 .............................. AAGGCTTAGTAATGCTTTGCACTGAAGCCAAAAAACATT 44806 30 100.0 37 .............................. AGACAACAAATCGACGGACTTTATTCAAAAAGTCTTG 44739 30 100.0 35 .............................. TTCAAAACCTAGCATCGATGAAGCTCAGGTAAAAA 44674 30 100.0 37 .............................. CACCCCGCTGCCCAAAATAAGCTCTTTGGGTTTTTAT 44607 30 100.0 34 .............................. GATAAAATGCTTCTAGGCTATCAACTACATTTTT 44543 30 100.0 34 .............................. GATAAAATGCTTCTAGGCTATCAACTACATTTTT 44479 29 93.3 37 ......-........A.............. TTTTTTATACCGCCATAGATACGATTTTCAAAGCACA 44413 30 100.0 37 .............................. ATTGAAGTTTGAAAGCCGTTTAACTCGCCGTTTTTCT 44346 30 100.0 36 .............................. CATTTAATCCTCGAGGATATTCTCTCTCAAAGTTCA 44280 30 100.0 35 .............................. TTAGTTTCTATCGCATCACTCACAGCCTTTTCGGT 44215 30 100.0 38 .............................. TCGATGAAGTTGTAGGACTTGACGCTTTTAACAACCGC 44147 30 100.0 34 .............................. TATTGTAAAGGCTGGTATTGATATTGTAAGCGGT 44083 30 100.0 35 .............................. TTAGTAATTTAATTAATGGTCTTGATACCAGCTAC 44018 30 100.0 40 .............................. GCAGTAGTTTTTGTGCTATTTTATGCACCACCAAAACATC 43948 30 100.0 35 .............................. TTTTATTTATTGCGAGGGCTGTCGCAAATCCCTCA 43883 30 100.0 35 .............................. ATTGATATATGGTGCAGATTTACAAAAAGAGTAAA 43818 30 100.0 34 .............................. TCGTTTCCATTATCGTTGTTGTTAGCATTATCTG 43754 30 100.0 37 .............................. GCTTAAAACCAAGAGCGTAGATAGGCTTCCAGCTAAG 43687 30 100.0 36 .............................. TAGAGAGGCTTTAGAGTTTGCACTAAGGCAGCAAGA 43621 30 100.0 37 .............................. CCGCATTATCAATATGCAAGATTGGAGCGAATATGGA 43554 30 100.0 37 .............................. TTGTGTTTTAAGTTTATTGGATGCATAATTTGAGAAT 43487 30 100.0 37 .............................. TTGTGTTTTAAGTTTATTGGATGCATAATTTGAGAAT 43420 30 100.0 35 .............................. AAAGCATAGTCCATAAAACACCAAGAATAGAGCCT 43355 30 100.0 34 .............................. AAGAAACTGGTAAGCTTGATGCTACTGCTTCAGC 43291 30 100.0 35 .............................. AACATTTTTTGCCCCTATCTCGTTTAAATTAACCC 43226 30 100.0 35 .............................. TTTTTTTCCCAGTTGTAGATAGTTTTTATATCTTT 43161 30 100.0 36 .............................. GGCGGTGACGCTTGTCATTTTCTCGAAACTCATATA 43095 30 100.0 35 .............................. CTTTTAGTTTGCCAAGTTCAGGCAATACAACTTCA 43030 30 96.7 35 ..............A............... TAAGCACTCCATAATGCGCCACCAGTCCCTAAAGC 42965 30 100.0 38 .............................. GCAATAGGCATTTTTGTAAAAGGTCTTTTTAATTGCCT 42897 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 65 30 99.8 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGAGCCTTGAGCCTACATCTCGATCTAGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTTATATTTAATATGCTAAATAAAAAGGAGATCACCGCAAAAGACTTCCAAACGGACGCCGGCAGGATAAAATTTAGCAACGATGCCGTGCAAAAGATCGAGCTAAAGATGCTCTCGCGCCTTTGCGAGACGCTCACGGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCGAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAGGTGGGAGTGAAATCGCATTTTGATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTTGCGTATTTATATGTAGCTAAAATTTAGTCAAATTTAAGGCGAATAAATATAGACTTTTTGCACCAAAAGGTCTATAATATCAGCTTTTTGGTGCT # Right flank : CCACCAAATATGATTAGCGACAACCGCAATCACTCTTTTGATAGTCGTTTTTTCGGAGCAGTTCCATATAAATTTTTAGTTGGCAAAGTTAGATGGCAGCTATTTTGACACAATTTAGAAAAGCGCCTTGGCCAAAGATTAAAATAAAGCAAATTACCACATTAATTTTGAAGAAGGTCGTGATATCTTTTGTTAATTATAATTAAAACAAAGAATATATGAATTTATAAAACCTACTTGTAAAAACAAGCAGGTTTTAAAATGTTTTATTTTTCTAGTTTTTCTTTAAGTTTTTCTTTTTTAGATTTAGCTTTTGAAGCAGCTTTTTCTTTCTTTTCTTTTACTTTGTCAACAACTTTGTCTTTTTCATCTTTTGCTTTTTCACCCATACTAGTTTCATCTTCTTTGCTAGAAGTTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTTGCCTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //