Array 1 427426-427058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMNX010000002.1 Ruminococcus bicirculans strain D59t2_181005_B8 NODE_2_length_458434_cov_27.4056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 427425 37 97.3 29 ....................................A AGCTTTTTCTTCATTGTCTACAAATGCAA 427359 37 97.3 29 ..........A.......................... CTATGTAGCTTTTCTTGTAAAACATATTT 427293 37 97.3 29 .................T................... CATCTGCCTTCTGCATATCGGACACTTGA 427227 37 97.3 29 .........C........................... TACACCTCCTTATGCGATTTTATCGTGCG 427161 37 100.0 29 ..................................... TCATCTTCAAGACCGAGCAGGGACATCAT 427095 36 91.9 0 ............................-..G...G. | CG [427063] ========== ====== ====== ====== ===================================== ============================= ================== 6 37 96.9 29 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAACT # Left flank : TACGCCGCCCTCACGCTTGGGCAGAAATGTGCTTGGGGTCATGCTCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCATAGAAAATTATTTTGTTGAAATTATGATATAAATGCCGTAAAACGTGATAAATGTGCAAAAACATAGACAAAAAAGTTTTTGATAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAACCACTTTCTATTGACATTTATGTCCGAAAATGGTATAATATATATATTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : TTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGCTGCTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTCAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTCTAAGGGCAGCAGCAATATCGAGCTTCATGGTGTAAACGAAGTAAACATCACTTTTTCCAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGAAGCGGTGAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 67860-68087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMNX010000013.1 Ruminococcus bicirculans strain D59t2_181005_B8 NODE_13_length_72823_cov_31.3664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 67860 33 100.0 32 ................................. CAGAAATGCAAGGTAGTAAAGTTGGACATCGA 67925 33 100.0 32 ................................. ACTTGTAGTGTACAACATGATACTATCAAACT 67990 33 97.0 32 ................................A ACGTACTCTGAACTCTTAATTATTTGCTATGC 68055 33 87.9 0 ..................TCA..........A. | ========== ====== ====== ====== ================================= ================================ ================== 4 33 96.2 32 GTTGCAACTTACGCATAGGTGTAAAATACGAGG # Left flank : GAACTATCCAAATGGAAAAGCTGACGGGTATTACATCTAAATCTGATCGTTTTCTAAAAGACTGGACTTATTATGACCTCCAGACAAAGATAGAAAACAAGGCGAAAGAAGTAGGGATAAATGTCGTCTATATCGCCCCTAAATATACAAGTCAGAGATGTAGCAAATGCGGATATATCCACAAGGATAACAGACCAAATCAGGCGAAATTTAGATGTCTTGAATGCGATTTTGAAAGAAATGCCGATTATAATGCAAGTCAGAATATCGGAATTAAAAACATTGATAAGATAATAGAAAAAGATTTGAAAAAGCAAAAAAGCGAAGTCCAAGTGAACGAAAACAAGTAGAAGGTTCACACAATTTCAGGGCGACTCGGCGTCCTAAAATCGAGAAAGTGTACATAAGTTTTTAACAAAATACGGTAAATACTCTCGGTAAGGTTTTAACGTGCACATAATAATCCGTGCAACAGGGTTACACTTTTGTGCAATTTTGTA # Right flank : GCACTCAATTTGCATTGTGATACGATATTGAATTACAATCACATATTTGTAAAACAACAAAAGGGCTGTCCACACAGCCCTTTTGTTCTTATCTAACCTATGCCAAGCCCCTTAACCCTTAGGCTTTTTCATAGTAAGCGAAATACGCTTTTTCTTCAGGTCAACGTTAAGTACCCAAACCTTAACTACCTCTCCGACCTTTACGACCTCAAGAGGGTGCTTTATATATCTGTCGCACATCTGAGAAATATGTACAAGACCGTCCTCATGAACGCCGATATCAACGAACGCTCCGAAGTCTATAACGTTTCTCACTGTGCCCATAAGCTCCATGCCCGGCTTCAGGTCTTTAAGCTCCATGATGTCACCGCTTCTCATAAGCGGTGGCGGCAGCTCGTCACGAGGGTCACGACCCGGCTTTTCAAGCTCCCCTACTATGTCCTTTAACGTCGGAGCACCAATGCCGATATCTGTGGCAAGCTTCTTCATGCCCATTGCAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACGCATAGGTGTAAAATACGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 137034-137463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMNX010000005.1 Ruminococcus bicirculans strain D59t2_181005_B8 NODE_5_length_279068_cov_24.321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 137034 32 100.0 34 ................................ GCAAGGGTAACGTCATCCCATATCTGCGGACCGC 137100 32 100.0 34 ................................ TCTTCAAAGGCTTCGAGGGTCAATGTGCGCTATG 137166 32 100.0 34 ................................ TCTTCAAAGGCTTCGAGGGTCAATGTGCGCTATG 137232 32 100.0 33 ................................ ATCATAGACGAAGCACAGGAATACACCACAGAC 137297 32 100.0 36 ................................ ACCCGTCTTCATTTCTGTAACTGAAAAACGACCCTG 137365 32 100.0 35 ................................ GAAGAACACGCAAGTATAGGTGTAACAAAGCTGGA 137432 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTAAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAGTAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAACGCACAGTGAACAAAATCAAATTGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TATGATAATGTAAAAAAGAGAGGTATCATGCAATGATTAAATTATTTTTGAAAGAATACTTAGATGAAATGTCAACTGTATGTAGGGATAATCAGAATAATGTAAGTATCGCTGTAAATCCCGATTCTGAAAGGCAGGGATATCCATATTTCAAATTTTATAATTCCGTTTATTATGGAGATGCTGCTAAGGTGGTTAGAATTTTATTTAATTCAGCAGATTATGTTGATAATAAAAATGCAGAAGACCAAAAGCTTTGGAAACTTTCGCATAAAGAAAAAAAGTTGCTTAAAGAACTTTTGAGTAGTCCTTCTGCAGAATATTCAGATATGACTATTTGGGAAGCTTGTAAATTTGAGTGGAACTTTGAATATTTAGAGCAATCTATTAACTTAGATAAATATGTAAATGGTGAATATGATAAGGATAAAACATTCACAGAAAATCCTGGCTATGTACCCTACAGTTTGGAAATGCCTGATTATTTAGAATTAAACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 137983-138145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMNX010000005.1 Ruminococcus bicirculans strain D59t2_181005_B8 NODE_5_length_279068_cov_24.321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 137983 32 81.2 34 CGT......C.CA................... TTTTGACGTTGCCGAAAAAGACTACTATTCGGAA 138049 32 100.0 33 ................................ TGGTTTCCTTGACGTTGTACTCAATGCCTGCAT 138114 32 81.2 0 .........C.C..............CA.TT. | ========== ====== ====== ====== ================================ ================================== ================== 3 32 87.5 34 GTCACGCTCAATGTGAGCGTGTGAGTTGAAAT # Left flank : AGGTATCATGCAATGATTAAATTATTTTTGAAAGAATACTTAGATGAAATGTCAACTGTATGTAGGGATAATCAGAATAATGTAAGTATCGCTGTAAATCCCGATTCTGAAAGGCAGGGATATCCATATTTCAAATTTTATAATTCCGTTTATTATGGAGATGCTGCTAAGGTGGTTAGAATTTTATTTAATTCAGCAGATTATGTTGATAATAAAAATGCAGAAGACCAAAAGCTTTGGAAACTTTCGCATAAAGAAAAAAAGTTGCTTAAAGAACTTTTGAGTAGTCCTTCTGCAGAATATTCAGATATGACTATTTGGGAAGCTTGTAAATTTGAGTGGAACTTTGAATATTTAGAGCAATCTATTAACTTAGATAAATATGTAAATGGTGAATATGATAAGGATAAAACATTCACAGAAAATCCTGGCTATGTACCCTACAGTTTGGAAATGCCTGATTATTTAGAATTAAACTTTTGCTAAATATGTAAATTTAA # Right flank : TTCGTTTCAACGCAGGACTTATCAATATTGAATAATACAAATAACCGCTTGACTAAGGTCGGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGTTTTCCGTCAAATCCGCCAATTCACACCCCGAAATTTGTGCAAACAAATGATATATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCGTGTATAAGTAGAAGAGGTTTCACCACAAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGCTTGAAAATTGAATATTTATACCGACACACCTTAGCAGTACCCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTTTGTTGACATTATTCATATAAAATGGTATACTTAAAATAAAATTTATACATGA # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCAATGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //