Array 1 6676-7923 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUB01000120.1 Salmonella enterica subsp. enterica serovar Anatum strain BCW_4009 NODE_120_length_8973_cov_1.10972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6676 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 6737 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 6798 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 6859 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 6920 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 6981 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 7042 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 7103 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 7164 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 7225 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 7286 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 7347 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7408 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 7469 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7530 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7591 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7652 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7713 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7774 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7835 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7896 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3297-2840 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUB01000456.1 Salmonella enterica subsp. enterica serovar Anatum strain BCW_4009 NODE_456_length_3351_cov_1.10876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3296 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3235 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3174 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3113 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3052 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 2991 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 2930 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 2869 29 93.1 0 ............TC............... | A [2842] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CCCGCGCTAGCGGGGATAAACCGGACCACGACTGGAGTGATCAGATCGGTGTGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //