Array 1 30243-28383 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOB01000016.1 Salmonella enterica subsp. enterica serovar Weslaco strain 172 NODE_16_length_97202_cov_29.8105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30242 29 100.0 32 ............................. CAGGTATTCAATGCTCTGCCCTGCCGTTATTC 30181 29 100.0 32 ............................. GGCTATATTGTCGAATTTCTTCGCGGTTGCAA 30120 29 100.0 32 ............................. TCGGCCACCAGCACGGCGCCGAGCTTGATTTT 30059 29 100.0 32 ............................. GTAAACTGGCTGAGATTTGTGGATGGACTCAG 29998 29 100.0 32 ............................. CGCAATGTTAATAAAACCAGTCGTCAGCGCTC 29937 29 100.0 32 ............................. TACCAGGGGCGCACATACCGCGCATCTGCAAA 29876 29 100.0 32 ............................. CATCTCACGTTTCATCGCCCATTGCTGCTGGA 29815 29 100.0 32 ............................. CTATTTCTTCGCTTACGTGGGCCGGGAATACC 29754 29 100.0 32 ............................. ACGCTTCTGCATCTTCGTTCCATTCGCTCTGT 29693 29 100.0 32 ............................. CTACAGAAATCCTCAATCGCGTTGCGGTTTTA 29632 29 100.0 32 ............................. GGCACCATACGCGCGCTTCGTAATGTTGTTGA 29571 29 100.0 32 ............................. GTTCCGGACTCAGTGTTGGCACCACTGGTGTT 29510 29 100.0 32 ............................. TTCTCGTTCGACAGCGGGAATGTCACCATGGA 29449 29 100.0 32 ............................. CCACTGTTGTGCTAACAGGCTGATAGAATACT 29388 29 100.0 32 ............................. AGAGAATATTATTTATGGAAAAAATTAATCTG 29327 29 100.0 32 ............................. TGAATTACAGGAAATTAAACTTCCCGGCTTTC 29266 29 100.0 32 ............................. TCAGCGAATTGAATGGGACAAAAACCTGAAAG 29205 29 100.0 32 ............................. CCACTCTAACGAGTGGCTTTTTTGTTTTCATA 29144 29 100.0 32 ............................. GAGCTACGAACCGGCGGTGGGGATCCCGTTAT 29083 29 100.0 32 ............................. CATCACTATTCCGATTCTGTTTTCGCTTTCCA 29022 29 100.0 32 ............................. GGTGTTAAAGGCGGAAATCTACGCCGAACTGT 28961 29 100.0 32 ............................. AAATAAATTGACATATTGATTTTATTCGTGAT 28900 29 100.0 32 ............................. TTGGCAATTCATCGGGGGAAGCGGTCATTTGA 28839 29 100.0 32 ............................. GAGCTTGCCGTGATAGATGCCAACGGCGGCGT 28778 29 100.0 32 ............................. TCCTGCAGCAGGCGATATAAGCCATGCTCCAC 28717 29 100.0 32 ............................. TGAAGGAGTTGATATCAGGGAGGGGGATAAGT 28656 29 100.0 32 ............................. CCCAGCGGAAAGTGGAAAAGGGCAAGGAAAGA 28595 29 96.6 32 ........T.................... GTGTGGTGAGTTCCTACGACCGGACCAGAAAC 28534 29 100.0 32 ............................. AGCAGGCAGGAGCGAGGATATGGTCGCCCGTG 28473 29 100.0 32 ............................. GTGCAACGAACTCTACCGTGGATTTACTGCTT 28412 29 93.1 0 ...........AT................ | A [28385] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGACAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTTTACCTGTTTAAAATCAATAAGTTAGAGGTCTTTAAAAATTAGGAAAAGTTGGTAGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGATAGATTTAGA # Right flank : TTTCACCAGCATATCAGTACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGTCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTACTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACAGAAAGTACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCATCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51605-50784 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOB01000016.1 Salmonella enterica subsp. enterica serovar Weslaco strain 172 NODE_16_length_97202_cov_29.8105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51604 29 100.0 32 ............................. TGGGGGCCGCTCAACGCTCAACTTGGTACGAT 51543 29 100.0 32 ............................. TAACTACTTCTCCCGACTGCCAGCACAGGGCG 51482 29 100.0 32 ............................. GTTAACAGTAAACCACTGACCGGTGATATCAC 51421 29 100.0 32 ............................. CGGCAGCGCTGGCGACCGGAACGCCGGTTACT 51360 29 100.0 32 ............................. CGGCATTCCCAAGAAAATGCACCTGTGTCAGC 51299 29 100.0 32 ............................. GTGAGGCTTTCGGGGCGGAAATTGGCGCTGCG 51238 29 100.0 32 ............................. CAATAAGCATAAAGAAAAGATGGCCAGCGGTC 51177 29 100.0 32 ............................. CCCCGGCATTACGAACGTTACCAGGAGCGTAT 51116 29 100.0 32 ............................. GGACAGATAAACAACTGTGTGTATTTCGGGCA 51055 29 100.0 32 ............................. GGGCAGGCAAACCAATTCAAATCAGGGCTGTT 50994 29 100.0 32 ............................. GCGGGTTAATAGTTGTTTGAGGTATTCAGGCA 50933 29 100.0 32 ............................. TTTTTGGGCTTGCTTGCTACATAATATGTCTA 50872 29 100.0 32 ............................. CGATCGACGCGGTTCCATCCGTAAAAACTAAT 50811 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : TGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGACTCATCCATTACCTCGCATTGTTTATTTTCTGTATGTGAATTTCGATGAGTATATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAATAAAAAATCATTCTATTAACTTTTTTCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTTATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTGGTTTATAAACAATGATATACGATTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCAACAAACCTGTAAAGTAAAAAGACCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTCGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCTCTGATGGCAGTTTTATGCAAAACACGTCGGCGAGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCTGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGAACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTACCTACCGATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //