Array 1 709189-709400 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCM01000002.1 Streptomyces albofaciens JCM 4342 strain ATCC 23873 Streptomyces_albofaciens_9747_chromosome_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 709189 29 100.0 32 ............................. ACTTCGGGGTCGGCCTGGGCACAGATCGCCTC 709250 29 100.0 32 ............................. TGGCTCGGCAACCCCTTCGGGCTCGGCTGGGC 709311 29 89.7 32 .....................T..G..T. GGTGCAGATCCACGGGTACGTGACGAACCTGT 709372 29 82.8 0 ...........C..C.........C..GA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : CACTGACCTTGGCCATAGAAGGCCCGCCAGCGCCTGACGAGGACCGGGTCCTGTCCTACCTCAAAGGAGGTGAGGAAATCTACAGCACCATGGGCGCGGAGCGTGACGCCATTTCCGGAGACGAGTGGATCGGTGGCGCCGGGTCGCTGATGACGGATGGCGAATGGGTCTGGCCTGTCGATCTCGTGCACTACCTCTCGCGTTACCACATTGCCCTTCCAGCCGATTTCCTCGACCATGTGCGGAAATCCGGGTACCAGGCTCCCCAAGTACCGGACGAGCGCTCCCGAGAAATCATGGCAGAAATCTTCCCCCGGCGGCCTTCCCCCTGGCAGTAGCACCCAGCACGCCGCCCGGCCCACACAGCGCTCAGTCGAGGAAAAACTCGATGCTATTGAGGTTGATCCACGTCGGCGCGAAGGCGTTGCTGTCGTGACTGTGCGAGCTGCCACCATCCAAACCGGTGGCCGCCGTACCGTCCCAGCCTCCGGAGACTGAGA # Right flank : AGCTGTGTTCCGCGCGGATGCGGGGGTTAGCCCCAAACGGGATCGCGCGGTCCCCCGCGCTCAGGGCGAACTCCGCATCCGGGCCTCTATCACCACCGAGATCTGGGTGCTTCCCGCCTGTCCGGATCCCCTCGCCGCTCGCAGGCGGCGGTCGCGTCGGCAGTTGCCGGGGTCGCCCCCGTACTGCTCAACGGGCCCCTTCAAGCGAATGCACAAATCGGTGTCTGCCACGCGTCACCCGCCACCAGCCAGTCCCTGCGGCGGCCGTTGTAGTCACCGCCAGAGCGCTTCCACACGGCCGCCAGTGGGATTTCAACCCCGCGCGGCGGGGACCACCTAGGCGATTTAGCCGAGGTCGGAACACCCCTGGCCCGTTCAGGGACGGCACATGCATCATGCCGTAGTCCCGTCCATAAACAAACGCCGCTCCGGGGCACCTACAGCACCCCACGTATTCCTAGTACGTCATCCCCCAAGGGGCGCCCTCTTACCTACCACCG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 725920-727360 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCM01000002.1 Streptomyces albofaciens JCM 4342 strain ATCC 23873 Streptomyces_albofaciens_9747_chromosome_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 725920 29 100.0 32 ............................. TGCTCCTGGCTCCGGTGTGCACGTGTCCTGTC 725981 29 100.0 32 ............................. GTCGCGGAAGCGCCGGACCTCGTCGAGCGTGT 726042 29 100.0 32 ............................. AGTGCGGGCAAGGCGGGTGTCAACGCGCAGAT 726103 29 100.0 32 ............................. GCGCCACCAGGGCGCAAGAGGCGGAAACCATC 726164 29 100.0 44 ............................. TGGCCCGCTGTGCCGCCCCGGTAGCGCTTCCACGCCGCGGCATC 726237 29 100.0 32 ............................. GACCCCCGCTTCGCCCACATGGCCCGCCACCG 726298 29 100.0 32 ............................. CATCCGACACGCTGGTAGGCCACGACGATTGC 726359 29 100.0 32 ............................. CCGATCGTCCTGATCAGCATCGCGATCGCCGC 726420 29 100.0 32 ............................. GGCATCGACCCCCACACGGTGGCCCTGCGTTG 726481 29 100.0 32 ............................. GCCGGGTGACGGCGCCCGGCCCACGCGAGGTT 726542 29 100.0 32 ............................. CGAGACCGTAACCCGTGACGGTCGCCGTTTCG 726603 29 100.0 32 ............................. GGCCAACGCCACCAAAATGATCACGAGGTACG 726664 29 96.6 32 .........A................... TGGACGTCGAAGACCGCGCGCGTCACCGCCAA 726725 29 86.2 32 .........A...........G..CC... TGGGCCTTGTGTTGCGCCGAGCGAATAGCCCA 726786 29 93.1 33 .............A..........C.... GGAGGCGCCGCATAGCGCAGGAGGGAGACCCCG 726848 28 75.9 32 T..A.-T..............T..A.G.. TTTTCGGAGCGCGTCGTCGCACTCTTTAAGGA G [726864] 726909 29 86.2 29 ...........C..C......T..A.... CCCTGTTCGGGGAAGATCATCGCCACGCA 726967 29 86.2 32 ....C......C......A......G... GCGTCACCGTCCTGTACCGCGTCCACTCCGGA 727028 29 82.8 32 ...........A.....A..A.C.....A CCACCGAGCGCGGGCAGCATCTCCGCGCGGAT 727089 29 100.0 32 ............................. GAACCCACCCCCCTGCGCCTGGACCACATCCT 727150 29 100.0 32 ............................. TGATCGGCGATCCTCTCGCCGACGCGGCGGCC 727211 29 96.6 31 ............................G CCGTCGCCAGGGTTTGCCGGTCGATGTCCTC 727271 29 100.0 32 ............................. GGGAACCAGGTCACGGTGCCGTGCGACGCGTG 727332 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ============================================ ================== 24 29 95.8 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : GCTGTGGTGACCGTCATCATCCTCGCCAACTGCCCCGCCGGCCTGCGCGGCTTCCTCGCCCGCTGGCTCCTGGAAATCTCCCCCGGCGTCTTCCTCGGCTCCCCCACCGCCCGCATCCGCGACCTGCTGTGGGACGAAGTCCGCCAGTACTCCGACAAAGGCCGCGCCCTCCTCGTCCACCAGACCGACACCGAACAAGGCTTCACCTTCCGCACCCACCACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACCCTCCTCCACCGCCCAGCCCCCCGAACCACCCCACCGGAAACCGGCCGCCCGCCCCAGCCCCCGAAACAGAACTGGAGCAAAGCCGCCCAACGCCGCAAATACGGCCGCCGATAACCACCCCAGCCCGCGTCCCACATGAATGGAGCAGCCCGCCAATGCCAGAATATATGCCTGTTATGTCGGAATCCCTGGAAGTAAGTAAAAACCCGTCCCTCGCCTGACAAAGCCGCTGGTCACGGCCT # Right flank : CTGAACTCGGTCGGGTGTAGCTCGTTTCGAGTGAGGGCGAAGAGGCTGGTCAGCGCCGGTGTCAGTGGTAGCGCATAGCATCCGGATCATGCGTGAGTTCTTCATGGCCGGTGGGCGGCGACTGTCGTATGTGGACTTCGGTGGGCCGGGGGCCCCGCTGCTGGCCTTGCACGGGCATTACAACGAGGCGTCGGCGTTTGCGCCTTTGGCCGAGGCGCTCGCGCCGCGGTGGCGGGTGATCGCTCTCGATCAGCGTGGTCACGGTGAGTCTGATCGTGGCGAGAGTTACGACCGGGACGACTACGTGGACGATGTCGCCGTCTGGCATCGGCATTTGGGCCTGGGTGCGGTAGCGGTGCTGGGCCACTCGCTGGGTGGCGTGAACGCGTACCAATACGCCGCTCGGCATGCGGACCGGGTCTCCGCGTTGATCGTCGAGGACATCGGCGCGGTCGTGGACAGCGACTGGTCGTTCACCTTGCGCCTGCCCCGCCAGACGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 735939-739447 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCM01000002.1 Streptomyces albofaciens JCM 4342 strain ATCC 23873 Streptomyces_albofaciens_9747_chromosome_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 735939 29 100.0 32 ............................. CCCAGTGACACCCCGGATCAGGCGACGCTCAC 736000 29 100.0 32 ............................. CCGACGCCGGCGGCGGGGCGAACTCGGCATGA 736061 28 96.6 32 .................-........... CCACCGACCCGGCCAACCCGGTCTACCACTTC 736121 29 100.0 32 ............................. CAGGCGGGGCACCATCGCGGTTCCACCTTAGG 736182 29 100.0 32 ............................. GCCGACGACGGAGGCGCCACGTGAACCTGATC 736243 29 100.0 32 ............................. ACCTCGCGGGGACTGGCCTTCTCGCCGCCGAA 736304 29 100.0 32 ............................. CCATATGGGTCCAGGGCGACGTGTTCGATGTG 736365 29 96.6 32 ..............G.............. GCAGAGGCCCGGTGGAAGAGGCAGGAGCAGGA 736426 29 100.0 32 ............................. ACGGTGGAGAACCGGTCCGTGCGGTGGCGGCC 736487 29 89.7 31 .......................C...AA TGCCGAACTGATCGCCGTCGGCGGACGGATG A [736510] 736548 28 75.9 31 ...T....GA.....T.-.........AT AGTGCTCGGCGAGCTGCGCGGCGGCTTGGTC C [736572] 736608 28 82.8 31 ...T..........T..-......C.T.. ACGGCCCGGCAGTCGCGCTGCAGCCGCTCCA 736667 28 82.8 32 .....-....T...........C.C.T.. TAGACGGTCTTGGTCAACTGGGAGACGATCCC 736727 29 96.6 34 ...T......................... ACGGCCGTCGCCATCGCCCGCGCGATCCTCGGGG 736790 29 86.2 32 ........T.....G.........C.T.. ATCCGCGCCCGCGTTCTGGCCCGGGATCCGAT 736851 28 89.7 32 ...........C.....-..........A CGGGCAGCGACGCCCACGGACGTGGCCGGAGC 736911 29 96.6 32 ........T.................... GTCCGGGAGGCACACGAGGTGGCCGCGGAGCG 736972 29 96.6 32 .A........................... GTCTTGTCCTTCGCCGTCAGCCCGGCCTTGGC 737033 29 100.0 31 ............................. ACGATGTCTCGCGGGTCGTCCGGCGCGGGGG 737093 29 96.6 32 .G........................... ACGCCGGTGGACGGCCCGGAGGACACGGTGGA 737154 29 100.0 32 ............................. TTGGCGCATGATTGGCGCGGCGGCAATCAGGC 737215 29 93.1 32 ................T....A....... TGATCGGCCGCGACCTCCAGGACGTCGCCGAC 737276 29 100.0 32 ............................. CAGGCCCGCGAGACCTACAAGGTCGCCAAGGC 737337 29 93.1 33 .....T......................A GCGTAGGAGGTCCGGGTGCTACTGCACGGGCGT 737399 29 96.6 32 ....................A........ AAGAGGGGCGTCGGGGAACTCCTCCGCTCGCC 737460 29 96.6 31 ...........................G. CTGTGGCCGCCGCGAAGCAAGGACATGGCCT C [737484] 737521 29 100.0 32 ............................. GTGAGGCACGCGTGAATCCTGACTTCCTGCCC 737582 29 93.1 32 .C...........A............... GCCGACGTGGGGGTGCTGCGCCGAACTTCGAG 737643 29 96.6 32 .C........................... ACCACCGACAGCCGCTTCGGGTCGGACACGTC 737704 29 100.0 32 ............................. GCCGACGTGGGGGTGCTGCGCCGAACTTCGAG 737765 29 96.6 32 .C........................... ACCACCGACAGCCGCTTCGGGTCGGACACGTC 737826 29 93.1 31 ........................C.T.. TCGGCGGTGTAGGTGAGCTGGTCCGGCGCCG 737886 29 89.7 32 .G......................C.T.. CCGGGCCCGTCCGTGAGTCTCACGGCTGCCGA T [737890] 737948 29 100.0 32 ............................. TCGGCCAGGAACGTCTCGGTCTCCCAGTACCG 738009 29 100.0 32 ............................. TCCGAGGCCATCTCCTGGGCTTCGGTGGCTAG 738070 29 96.6 32 .........A................... GACAGCCGGGCTTCCCCGCCGAACGCCTGGAA 738131 29 100.0 32 ............................. TTACCGGGCGTGGCGTGGGACTTTTTTGTGAC 738192 29 96.6 32 ........................C.... GCCACCTTGGTCGTGGAACACGCGGAGATCAC 738253 29 100.0 32 ............................. CCAGGCCGCACAGGCGGGGGCCACTTCTTCCA 738314 29 96.6 32 ......................C...... CCAATCGCGCGCTCCTCCAGGTGCCCCGTCTT 738375 29 93.1 32 ............T.T.............. CATCGTTGCAACACTTAGGCCGTGGCCTTCTT 738436 29 96.6 32 .......T..................... GCGGCCTACCTGCGAAGCCGCGTTCCTGTTCT 738497 29 96.6 31 ...........................G. TGGTGGAGCATCGTGGATTCCTTTCGCTCGT C [738521] 738558 29 93.1 32 ........................C.T.. ATCGCGAGAGGGCTCATGCTCTGGTGATCTCC 738619 29 93.1 35 ........................C.T.. CTCACGGTGGGCGTCACGTCCAGTACGGCGAGGTC 738683 29 86.2 31 CC..C......................G. CGGTAGGGCGGTAGGTAGGGGGCCGGTAGGC C [738707] 738744 29 96.6 32 .....T....................... CAGGCGATCCGTACGACCCGTGCCATGGGCCA 738805 29 93.1 32 .............A........C...... CCCTCCAGGGATGGGCTCATGCCGTCGTACGA 738866 29 93.1 32 .............A........C...... CCCTCCAGGGATGGGCTCATGCCGTCGTACGA 738927 29 93.1 32 .............A......A........ CCGGTCCCGCGCGAGTGGTGGTTCGCGTTCCG 738988 29 82.8 37 .C...A.......A........C....G. AGCTGACCTGATGGCGGCCGCCGTCGTCAAGATCCTG C [739012] 739055 28 86.2 32 ..............G..-......C.T.. TCGAACACCACGGTGGTGGTCGTCTTGCCGGG 739115 28 82.8 32 .C...........A..-T..........A CGGGTGTCAGGCATGTGAGGCATGTGGCCTGT 739175 29 93.1 32 ..........G..A............... GCGTTCTCCATGAGCGCGACCTCGGTCATGGC 739236 29 93.1 32 ............A.....A.......... CGCGGGCGTACACCGAGTACAACCGGGCGCGG 739297 29 93.1 32 ......T............A......... GCCACGGTGATGGTGCGCTTGTGCGGGGTGGC 739358 29 93.1 30 A..........................G. CATCGAGGGGCGTTGCCTGGGACACGTACC C [739382] 739418 29 93.1 0 .G............G.............. | T [739422] ========== ====== ====== ====== ============================= ===================================== ================== 58 29 94.4 32 GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Left flank : GCGCCTGCTGCCCCGCATCGTCCGCGATACCCAGCATCTGCTCACCCCAGAAGCCACTACCGCCGCTGACCACAGCGAACGCCACGACGTCGACATGGTCCACCTCTGGGACCCCAAAAAGGGCACCCTGCCCGCCGGAGTCAACTACGCCGGCGGCGACCGCTGATGCCTTCCCTGCTCGTCATCGCCACCACAGCCGTCCCCGACCATCTCCGAGGCGCCCTCAGCCGCTGGACCAGTGAAGTCGTCCCAGGCATCTTCGTCGGCGCCGTATCCGCCCGCGTCCGCGACCAACTCTGGCAAGCCGTCACCGAAACCGTCGGAGACGGCGCCGCCCTCCTCGTCCACCCTGCCGACACCGAACAGGGCTACGCCCTCCGCACCGCAGGCACCCGCCGCCGCGCCCCCATCGACTTCGACGGCCTCACTCTCATCCGCATGACCGGCACACAAAAGGCAAAGAACGAGCAAAGCCCCCTTTAAGTCGCAGGTCAGGAAGA # Right flank : GCCGTGGCGGTCGCGTCCGCGCCAGTCCGTGAGGTTCTTCCTGCAGTCGCGGGTGTTCCGGCCACGAGAACGGCGTTTCGGCTGGCGTCGGAGACCTCGCCAGACACCCTCTGGCATGACGGTGACCGGAACGCGCCCCAGGCGCGATGCTGTAGGGCTACGCGATACCCCGAGCGCCTTCCCCTCATCACCCGAGCGGGGGAAAGCCGCGGTCTCGGGCACACCGACGAGCGAAACCCGCGCAGCTTAGGAGGGCCTAACGGTCACATGAGGTATCGCACAACCCAGCGCCAACCAGGGTCGTACGTCAGAGCAGCTCAGAGCCCAAGGTCCCAACCGTATTTGCTGCTGATGCGGCCGGTGGCGATGTGGCGCAGCGCGGCGGCGTGGTAAGGGACGGTCTGCTCAGGGATGCCGTCGAAAGGAAACCAGGACAGTCCGCCGCATTTGTCGGGCTCGGCGTTGTACGGTTCGCCGTCCCAGGAGTGGGCCCGGTAGAA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGCCGCGGGGGTGTTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [34-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //