Array 1 19282-18116 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOYF01000013.1 Budvicia diplopodorum strain D9 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 19281 29 100.0 31 ............................. TTAGATCGGCGGCTCGTCATCGTTGCTCATT 19221 29 96.6 31 ............................C GATTATAGCCAAGTTTATCCGCGCATAACGT 19161 29 100.0 31 ............................. GTAGAATCGCCAGTCCGAGGTGTAAAGAAAT 19101 29 96.6 31 ............................T AGATCCCCAGCGCATCAGTAATGTTTCTTAT 19041 29 96.6 31 ............................T CATGAAAGTTTACCCATTGCATACCGCCGTT 18981 29 96.6 31 ............................T GACTCGCTGACGCGCACCGCCTCAGCAGGTA 18921 29 100.0 31 ............................. TTAAAATAGTAGCCACGCCACCAATTCCACC 18861 29 100.0 31 ............................. GCGTGTCAGCGCCACCGACTTTGTAGATCAT 18801 29 100.0 31 ............................. GTCTGTGGGCGTATAACACACTGGATGCCAT 18741 29 96.6 31 ............................C GGATGGATAAACCAACCGGATCGGCTTCTGA 18681 29 100.0 31 ............................. CAGCGCATCATCAAACCCGTTGCTATCGAGG 18621 29 100.0 31 ............................. GCGCAACGGATGATTGATAAGGCTTATCCCG 18561 26 86.2 31 ...........---..............T TGTGCAGGACCGTGAGTTTCAAAAATTTACA 18504 29 96.6 31 ............................G CAAACATTTTAGCATCGAATTCGCTGCTGGT 18444 29 96.6 31 ............................C TTTATAAACATCCTCTGCATAAACCCAAATC 18384 29 96.6 31 ............................C TGATTCGCTGTACCAGTGCATTGATATCTGA 18324 29 96.6 31 ............................T TCCTTATTTGAGCCAGCTGTAGTGATCGCAA 18264 29 96.6 31 ............................T ACGTCCGCTGCTGGTGAATATTGAGCAAGAA 18204 29 100.0 31 ............................. ATCTAACTTTTTCTGAATGCCGACCCATCCA 18144 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 20 29 97.6 31 CTGAACCGCCGCATAGGCGGCTTAGAAAA # Left flank : TGTACACACTCCGTCTGGCCGTGTTTATCACGTTAAATTCAACCCGCCGAAGGTTGAAGGTAAAGATGATGCTACCGGCGAAGAGCTAACGCTGCGTAAAGACGATCAGGAAGAGACCGTTCGCAAGCGTTTAGTTGAATACCATTCTCTGACTAAACCACTGGTGAACTACTACACTGCTGAAGCTAGCAACGGTAGCACCCGTTATTTCAAGTTAGACGGTACCCGTAAAGTGACCGAAGTTAGCGCTGAGCTGGCAAAAATTCTTGGTTAATTGATTCTTCAATTGACTAACAAAGGCGACCAATGGTCGCCTTTTCTGTATCCGTTGCTCCCAACTTCATCTGATAACTTACTGTTGATGGCTAATAACCCTTTTTTATAAGAGTTTTTAACTCATTGATTTTAAAATAAGAGAATCGAGGTCTTAGAAAAGGGTATTAGACGGCCCTGAGTGAATAAACAGATTAACAACAGTAAGGTAGTGGAGTATGGTTCTA # Right flank : AAGCTAAATGATTCTACCGACTCCATCGGCTCTGAATCGCTGCAGGCGGTTAAAAAAGCACTGCGTTGGCAAATCATATCACCGTTATCTATCGTAGTAATTGGCTCGAAAAGAATGATATGGCGCTCGCTATATGTCAATATATTGCCTGCCGTTAAGGCCGCTAACGGATATCAGTATTGATAATATTACGGTGAACTGCCGCACGGGCGGCACCTCTTTACACTTGTTGGAGCTACCGCCTTATAGGCGAGCAAAACACCTATGCCGCAGATTAAAACCGGAATCCTGTTAGTTAACCTAGGTACGCCTGATGAGCCAACGGGGCCGGCGGTAAAACGTTATCTTTCTCAGTTTTTACACGATCGTCGGGTGGTGGATACCCATCGCCTGATTTGGTATCCGTTGCTGCACGGTGTGATTCTACCCATTCGCGTACCGAAAGTGGCTAAGCTGTATCAGGCCGTATGGATGGATGAAGGCTCCCCGCTGCTGGTTTA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 147043-151212 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOYF01000007.1 Budvicia diplopodorum strain D9 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147043 29 96.6 31 ............................C GTGCCTCTGAGGTCGAGGTAACCGCCGACGC 147103 29 100.0 31 ............................. AAGTAAGCAGCAGGGCTTTTTCAGATATGTT 147163 29 100.0 31 ............................. CACACTACACACATACACAGCACATGCACAG 147223 29 100.0 31 ............................. CGGGTCGTGGACAAGAAATAGTTTGCATTAT 147283 29 96.6 31 ............................C ATATCCGGAAACGCCCGTGATAACACTGCTA 147343 29 96.6 31 ............................G GATATGTGCTGTCAAGTCCCATATCCGGAAA 147403 29 93.1 31 T...........................T GATGCCGATGGCACTCACGGCAGAGAACGGC 147463 29 100.0 31 ............................. TCCGGATTTTAGCACCCATCAACTCATCGAG 147523 29 96.6 31 ............................C AATAGACGTATTGCCGCCGCTCGCGCTGAAT 147583 29 100.0 31 ............................. ACAGAATAAGTAAACGCCTCGGGCCAATTCA 147643 29 96.6 31 ............................T CTTAATTGAAATGTAGTGCCACGTTGGACAC 147703 29 96.6 31 ............................T TGAGGTGAGAGACCAGACGTAAGTGGGTAGT 147763 29 96.6 31 ............................G TGAACACATCATCCCATAATCCTATAGCCCT 147823 29 96.6 31 ............................C AGCTATGATATGTTGCCTCATTGAGACTCAA 147883 29 100.0 31 ............................. CTTTGCCATTGTATGCTTCCAAGCCTTGTGC 147943 29 96.6 31 ............................T GTCATTCACACAAGTTCTTGGGGTGTATGAG 148003 29 100.0 31 ............................. CAGATTTGTCGCGGTGAAATACAACTCCGTG 148063 29 100.0 31 ............................. TAAAATCGATCGCTCTCAGTAAGTGGCGTTT 148123 29 96.6 31 ............................T GCGTTTGGGATAGCGAATTGCAGGGTTTTGG 148183 29 96.6 31 ............................T GTCCGAGGCGCGGGCGGTGCGAATCGTTCAG 148243 29 96.6 31 ............................T CACCTCCCCCGTCCTCACCCCCGCTGATGGT 148303 29 100.0 31 ............................. CCCCACCCCCTCCCCCTCTGGGGGTAACCAC 148363 29 100.0 31 ............................. AGAAAGATGAAATACATCGGGTAGATGACAA 148423 29 96.6 31 ............................T AGTACATCAACAACAAATGAGGATTTTAAAA 148483 29 96.6 31 ............................T TGTCAGCAAGTTCATGTAACGCGTTGCGTAA 148543 29 100.0 31 ............................. TCTGTAAAAGTTAAGTAGCTCACTAGAACTT 148603 29 100.0 31 ............................. AATGTGCATTCAGGTGCTTATGTGCTTTATC 148663 29 100.0 31 ............................. TGACCTAGGCTACCCTACCTCTGCACATGCT 148723 29 96.6 31 ............................C ACGACGTTAAGCCGGGGCCGAGAGAGGGTTG 148783 29 96.6 31 ............................C CATCCCGACTCCGTCGGAGACCAACATTAGA 148843 29 96.6 31 ............................T AGTCCCCACAACATTAACTCCTGTTTCTCTA 148903 29 96.6 31 ............................T AGCGCGTAGTTTAATTTAGCTACCTGCTTGC 148963 29 96.6 31 ............................C AACGGTCTGCTACACGCATGTGAAATGTTAC 149023 29 96.6 31 ............................T TGTGACACGCTGAGGCGTTTCACGTAATAAC 149083 29 96.6 31 ............................T AGGTTCCGACGCCAGTAATCAACTGCACACT 149143 29 96.6 31 ............................C GGCTGCGTCGATCAGAATTATGGCCAGGTTG 149203 29 96.6 31 ............................T TGTCAGAGGGGCTTTGTGGTAACCTAACAAT 149263 29 100.0 31 ............................. TGACAGAAAGAATTGACCCGCGCGAGTTTGA 149323 29 96.6 31 ............................G GGTGTACGCAGCATTAATCAAAAATACAGAA 149383 29 96.6 30 ............................C AGAGAGGCAGGCGTATGCCCATACAACGCA 149442 29 96.6 31 ............................T ACCGCACGAGCCTGTGGCTAGATGAATTAGA 149502 29 96.6 31 ............................T GTGCGCGTTATGCCCGCCTCGTATTCGTTTG 149562 29 96.6 31 ............................G TCACGAACAGTCGTCAGTTATCTACGCGTTA 149622 29 96.6 31 ............................G CTACTGTATCAAAACCAAATCTAGACCTAGC 149682 29 96.6 31 ............................T GCGGGACGCTAAAGTTCGGCAGCTGCACAGG 149742 29 100.0 31 ............................. TGTTTCACCACCTGTTTATCAAAATATTCGA 149802 29 100.0 31 ............................. CTCACCTATAAGATATTACAGTCGGTGGTTG 149862 29 96.6 31 ............................C AGATAACAAAGCGAGTTAAGTCCCGAGTAGT 149922 29 100.0 31 ............................. ATCAGGCGAGTAAAGACTACGGTGGGGTTTA 149982 29 100.0 31 ............................. ATTGTTGTCCTCCCAAACCTCAACACTATAT 150042 29 96.6 31 ............................G TATCCTGTTTGCAGCAATAACCGTCACGAAC 150102 29 100.0 31 ............................. TGAACTAATCATGGCAATCGCAGCAGACCCT 150162 29 96.6 31 ............................C TGTTCGAGTTATCCCAGCTTCGTACTCGTCT 150222 29 96.6 31 ............................G GTATTACAGACCCTCAATGCATTACAGGCGG 150282 29 96.6 31 ............................T ATCAGCCTGTCGAGGACTAATACCTAACAAT 150342 29 96.6 31 ............................C TCACCCACCGCGGCACACCGGCCGCCATGCA 150402 29 96.6 31 ............................G TGTTGTATCAACTGTTGGGGGTGTATGATGA 150462 29 100.0 31 ............................. ATTCGCGAATTAGCTACAAATGCACTACAGC 150522 29 96.6 31 ............................T ACTATGAGAGGGACGTAAAATGGCTATACTG 150582 29 96.6 31 ............................C TCCCTCACACCCCATATTACAAACTCTTGTT 150642 29 100.0 31 ............................. CGAGAACGCGGAACCCTGCTAATGCTAATTG 150702 29 96.6 31 ............................G AAAACGCCCACGCTAAATAAGGCAATAATTC 150762 29 100.0 31 ............................. GATGTAATCATCAATTTCATAGGCACGACCA 150822 29 96.6 32 ......T...................... AACTCGGATCAAGTTACAGAGCAGGCGATAAA 150883 29 100.0 31 ............................. TTGACGCGAGAGCCCTGCTGCAGCTTTTTTT 150943 29 96.6 31 ............................G ATGACTGCCGCCGCCACGGCGCTGGCTATCG 151003 29 100.0 31 ............................. AGCACGCGTAACGCCTGCGCATTCCAGAGCA 151063 29 100.0 32 ............................. CCATATTGTTGATGTCCATTAATGAGATTGAT 151124 29 96.6 31 ............................G GCGTCAATGGCTTGAACAGGAATGGAAATAT 151184 29 72.4 0 ............TC....A..C..C.CCT | ========== ====== ====== ====== ============================= ================================ ================== 70 29 97.4 31 CTGAACCGCCGCATAGGCGGCTTAGAAAA # Left flank : TCATGCGGTATTTGTGCGTAAGCACACTAAAAGCCCGCGCGACGTTGAACGCAAACGCCAGCATCTGCTAAAAAAATCAGGCGGTGAATGGAATGAGGAAGCACAAGAGAGCTTGACGCGATTTATTGGCAAACTCAACTGCAATTATCCGTTTGCTCAACTGATTAGCCATAGCTCGGCACCGGCAAAGGGTATGGACAAAAACCATTTTTATCTCTTTATTGATAAACGAATAACGCCGGAGAAAACCGGTCAGTTCACAAAATATGGTTTAAGCGACCCAACCAACCACGCCACCGTTCCGATTTTTTAAACGTTAATGGAGTTGGTTCTTTAATAATGCGGAGATGAACTTAACTAACCCTTTTTTCAACGATAAATTCTGACTTATATAAAACAATAAGTTACGAAACCCGCTGAGAAAAGGGTATTTTAGCCGGAAATTGATAACTATCCTTAGATAGCAATATCTGCAAGGGTGTTTTTAGTTTAAATTTCTA # Right flank : TCAAACATAAAAAAACTTTGGAATGTACTTCGCAAACTAATGTTCATTCCTTGGTTAGCTATAGCTCTTAATATACAATCGCCGGGCTGTGGTGAAATCCACAGTCAGGATTTGCACCCTGCTGATATATACTGGTTTCATCATCTACGCTGTGTAGTGATGTTATTGCCTTTGTACACCCGAAATAATGCAGCTCATAAGGCTGTTTTGTTACGTGACTACGGTGTCTCAGGTAGGGCAGCCTTCGGGCTGGCCGGTATCCAGTAGAGCCGGTAGTGCAAACCCTGCTTGAGCCACCACCAAAGAGATTTGCACCTCCGGTGGTGGCGTTACATCAAATCTACTGGAAACCTAACCATGACTAAAACCTCTCATAGCCCGACCTACTTACCGTTTCTCTTCGCATTATCCTGCACCATTTTATTTATAAAATAAGTGGTGATATCAAATGACGATGCAATCCGACTGGCACTCTGCCGATATCATTGCTGCTTTACGCA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //