Array 1 761820-762488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSO010000001.1 Veillonella atypica isolate MGYG-HGUT-01444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 761820 35 94.3 44 .....T........T.................... ATTCTTATTGCTGGTTCAGTAGGTTCTGTTGAACTAGAAAAAAT 761899 35 100.0 44 ................................... CTTCTATATATTACCGACACATATTACTGCCGTTACACATTCAA 761978 35 100.0 45 ................................... ATTATATTCGTGATATTGTCGAATTGGTAGAGGGTGCATAATGGA 762058 35 100.0 45 ................................... ATTATATTCGTGATATTGTCGAATTGGTAGAGGGTGCATAATGGA 762138 35 100.0 45 ................................... ATTATATTCGTGATATTGTCGAATTGGTAGAGGGTGCATAATGGA 762218 35 100.0 45 ................................... GTTGCAAGAAAAGCGTTACGTTTTAATTGGGGGTGACACAATTGG 762298 35 100.0 43 ................................... GTAGACATGGATGGTTGTCAGAGTGGTTTATTGAGTTTCTTTG 762376 35 100.0 43 ................................... TTAGTAAAAACGAACAAGTTTTCAAATGGAACAAAGATGAAAT 762454 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 9 35 99.4 44 GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : GATTAATCCACATAGACCATTCCATACGTATCCATCATTACCGTTTAAATCGAAACATGATAAGCAAATAAAGTATGTAACAACACCACTAACAATTCCGCAGTCATTGTCTAAAATAGCAATGGAATTGATGGATTCCATATATGCAAAAAATTCAAATATTACGGAAGATCGCCTTACTATGATGAAAACATTATTTGCTGAGCGATTAGACATGCTAAATGCATATCTAACGAAATTAAAGTAATATAAAATTTAACAGAATAAATTCAATATCAGAATAAAAGTAGCATTACTAACGTATAGACATAGATGGCATATGCCAGGTGCCCTATATTATGTATAGTAATGCTACTTTTTTATTGTAAATTACATCATAATCGAAACCTAGTCAAAGATCAGGAGATATATAGAATAAATTTTGGAAAATGATATTTCAGGAATCCTTATATTCAAATAAAGCCTTATAGTAAGCCTAATAATTTTAACAAAGCTAAATA # Right flank : CTCTGTATCTGAAACAGTAGATGTTATCTAGCCATAAATCACCATTAACGGCGGAGATCATAAGTCGACCTCAAACAGCACTTTAGAACGCTAAAATAACACCTATAAACCGCACCACTATCACAACGGCGGAAATTTTATTTCACAAGGTTATAATCTAGATATATTATAGCATAAATAAACAAAGAAATTGCAATAGTAGAATTATCAAGGATATCAAATTAAAGATAGATAACTAATAAAAACAGATGATTCTACCATTGCTCAGTAAATAACATCTCTAATAAATACATTAATTTTCATTACAATATAATACAATCTTGCTCTTTTCGTTCTCCAATTCCCCATGTATAGATATTAATTATATCGTCAAGTATATATACACGTAGGGAATCTTCTACGGGATTGATAATTCGACTGGCACGCCGCATCATAGCATCATATTGCTTTCTATTTAGTAGTGCCTCAAATGCTGATTTTTGAACACGCACGCCATAACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 773268-772373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKSO010000001.1 Veillonella atypica isolate MGYG-HGUT-01444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================ ================== 773267 33 97.0 44 ...............................T. GTGACTATTTCAAAAGTTGATAATAATAGTTTACATCGTATTGT 773190 33 97.0 48 ...............................T. GGTGTAAATATCCATGTTTTTATTCAAGGAGGAATTACCCTATGGAGT 773109 33 100.0 47 ................................. ACACTTCTTGCGTTAACTCATCCACTAAGCGTTCCAACTTGCTGATA 773029 33 100.0 44 ................................. ACTTTAAAATACTTTTCTTCACAATGCTATAACATTCCCGCAAA 772952 33 100.0 45 ................................. ACCATCTCTTGTACATATTGTCTAAACTCTTCAAGTGGTGAGTGC 772874 33 100.0 45 ................................. ACATGTTTTCACTTCCAAATGTACCTGCAATGCCTAGTAATACTT 772796 33 100.0 46 ................................. ACCGCTTGTAAATCGTGGCTGTTTTTGCATTTCTAACCCTAACACG 772717 33 100.0 45 ................................. ACTCATGTCAGTCCATGGCTTAGGCTTCACGATCGTTGGTGTGCG 772639 33 97.0 44 ..............C.................. ACCATAGCACATTCCTTTCTTAAATAAAACATGGATATTTACAC 772562 33 100.0 48 ................................. ACGTACTTACCGCATCAGCAAATATCACTTTTGGTCGTTGAGCCTCAA 772481 33 97.0 43 ..............................A.. TCAATATCACACTCAATAATATTAACAATCAAAATAACATCCC 772405 33 84.8 0 A.............C...A.A.........A.. | ========== ====== ====== ====== ================================= ================================================ ================== 12 33 97.7 45 GTTAAATTAAATAATCCCCTGATGGGGACGGAA # Left flank : TAGGTTTGTTCTTGAGTCCTATCAGCCCTGTTATGGTCGGTGTAGCAGGGGTAGCGCATATTAAATCTGTAGATTTACTTAAACGAACCTCTGTGCCTGTACTTGTAGCACTAATTACGAGTTGTTTGGGGATATGGATATTATACTAATATTAATATTAATGGATAATATAATAACGAATACTGTAACGAAAAAAATAAGCCTCCCATTATCGCAATAGATAATGGGAGCGTTATAACATGGATTTATTTACCAGATTATAGAGTCTCTGTTTTTATATGCAAATTTTAATTATATAAGATATGGCACTTCCTTAAAAATTTTGTGCTATAATATACACAAATATTAACTCTCTGAAATTAAATTTCCGCCGTTACGATAGTGGCGCGATTTATAGATGTTATTTTAGTATGCTAAAGTACCTTTTAAGCCCAATTTATGATCTCCGCCGTTAATGGTAGTTTTAGGTTAGATAACATCTGTTGTTTCAGATACAGGGT # Right flank : ATATCTAACTCTAACTCTAGTTCTTTCTCTAACTCTATTTTTATCGTTAACTAAATCCCTTTATAGGGTAATGAGTCTTATCTCAAAAACTCATATGAGTACAAAAATATATCCAGTATATTCTTTTTTTGTGAATATGCTGGATTTTTTGTATAAATAAGACTATTTCTCTATTGGTTTTAAACAGAGATGAATATATAATGAAAGTAATAAGTCGTTTATTTCGTAATAAAAGTTTGGAGGCGATGTGATGGGTAAATGGGATGCACTGGTAAAGGGTGCATTGCTTCATGATATCGGCAAAGTTGTGTATCGAGCTAATCAGGGAACTGATGCACATTCTAAGCGCGGCGCTGCTTTCATCGAGCCCTATTTTTCCGATATGGGCTTGAAGCAAAGTATTACTCATTGTTTAAAGTATCATCATGAGAAAGAGCTTAGTGCAGCTCAACTAAAAAATGATGATTATGCATACATTGTGTATGAAGCAGATAATATTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //