Array 1 199-1813 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRQ01000030.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199 29 96.6 32 ............................C ATAAGATCTAGTTACTGATTCACTGGACTTTA 260 29 100.0 32 ............................. ATTTGACCGGTGATTACTGTGTCAAATCCGGC 321 29 100.0 32 ............................. AGCCAACCCACTTTTCCATAGCAAAAACGGCA 382 29 100.0 32 ............................. CATATGATTTACCATCACTATCAAGTGCATTT 443 29 100.0 32 ............................. AATAGCTTTAGCAGTTGTGGAAGATGCAGCAG 504 29 100.0 32 ............................. GAGTATTTGTGTTGATATATTTTTGATAATGC 565 29 100.0 32 ............................. AAGCGCGGTGGTTTAACTAAGACTGGTTCAGC 626 29 100.0 32 ............................. GTTCAGTTCACTGACTTCAGGAGAATACATCA 687 29 100.0 32 ............................. ACCAACGCTGTTGTAATTGCTTTGCCAACTAG 748 29 100.0 32 ............................. AAAAAGCTTGGGTTTTAATCAAGCAAAAGTAG 809 29 100.0 32 ............................. AAGTGTCGTGGTAAGTTAACCAGAAAACCGTC 870 29 100.0 32 ............................. ATCTTCTTTTGCTTTCTCCCACGGGATCCATG 931 29 100.0 32 ............................. TATGAATCAGAATTAAAGCAATTCCTTGAAGA 992 29 96.6 32 ............................C AGTCGGCAATGTCTTCATCCTGTCCGCCTAAG 1053 29 100.0 32 ............................. AAATAAAAACCAAGATGTTGCAGTTATCCAAA 1114 29 100.0 33 ............................. ACCTGTTTTTTTCTGCAACATCTGAAAGAGATA 1176 29 100.0 32 ............................. TAGATGAAAAGTATTTTGAAATAGCTAAGCAA 1237 29 100.0 32 ............................. ATGCAAAAAAACACAATCAGTTAAGCAAGGTG 1298 29 100.0 32 ............................. TTCTTTTGCGCTACTAGGCATTTACGAATGTT 1359 29 100.0 32 ............................. ACAAAATGACACTTACTCGTTTTGGTAAAGAA 1420 29 100.0 32 ............................. ACCACTTAGTTTTGTCAAAGCCTGCTCGATTG 1481 29 96.6 32 ............................C TAGAACCAGATAGTGAAATGATAACCTCCCAA 1542 29 100.0 32 ............................. CAACACGTGCTTGGGAATTGATTGGAAAAGCT 1603 29 100.0 32 ............................. TTGTCTCAATACTTTATTTTTTAAGGATGAAG 1664 29 100.0 32 ............................. TGTCCCATTTACCGTGCCAGCGGTAGGGATTA 1725 29 100.0 32 ............................. CATGCAACGCTCGTGATTACCCGCCGATACAT 1786 28 82.8 0 ..........-...A....T......T.A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTTTTGTTCAAACCAATCATACGAGAAAGGAACTCCTTTTTCTAATGTTTTAGGAAATTAAATTAAGGAATCCTTCATCCTTACACAAAATATTTTACGGTCTCATAAAAACATTTTGAATTATAATTAAAAATAAAACTATTGAAAAAATGAGTTTTTGATTTTTACAAAAGCCGGTATTATGGGATCTTTTTAGTG # Right flank : AAATAAATTAGCTAGATGCCTCAAATGAGGCATCTTTTTTGTTAGAAGGATTTTCTATGTAAGCGTTAAATGATAAAATAATAGGAGAGATTATAAAATGAAAAGAGAAAATAATGAGTTCTTTATCAAAAGCGGCTAAAAGTTTATGGGGCAAAAAGGCTATTAAAAATGGGCAAGAGCTTTGGCTGCCATTAATTGCTCACTTAATTGATACTAAAAATGTAATAAATTGGCTCTATAACCATTGGCTAAGTGATAAGGAACAACTAATTATTGAATCTTCTCTTCCAAATCAGAATATTCATGCTTTAGTAAAATTTCTTGGGTGTGTCCACGATTATGGTAAATGCATTCCTGCTTTTCAGGGAAAGCCTTCATATCAAAGATCTAAAGTTCTAGATCAGGATTTGCTAGAAAGATTGCTGCGACAAGGCTTAAGTAGCATTAAGTTAGTGTCGATGGAAAAATCACCTCATGCGGTAGCAGGGGAAGCTTTACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11282-12653 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRQ01000030.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11282 29 96.6 33 ............................C TAAAGCTAGTACGGATACCGATTCTGCAGTTAA 11344 29 100.0 32 ............................. AGTCATTAGTCTTGTTATCTGCTAAGCGATAT 11405 29 100.0 32 ............................. TTATATCGCAATATTATTGTCGGTGGTCGATT 11466 29 100.0 32 ............................. AAAAATAAGGAAAAGCAAATGGATAAGAACAA 11527 29 100.0 32 ............................. AAAAATGGGGAACGAGAAGCGGATTTTATTAG 11588 29 100.0 32 ............................. CAAGTAAACGTACCTTATAGTCAGGATTATTA 11649 29 100.0 32 ............................. TTGTAAAAAGATATTGGACTAAGAAAAGGAGT 11710 29 100.0 32 ............................. GTGATCCAAGTGATACTGACACAGCTTATGAC 11771 29 96.6 32 ............................C GTGTCGCTCTCCATTCGGACGGTCTTGCATGT 11832 29 100.0 32 ............................. TCAGTTCCTAGCGCCACTTCTATGACTACAGG 11893 29 100.0 32 ............................. TTGTAGCAAACGATTTGGGAACAATTATTGCT 11954 29 100.0 32 ............................. TTGTAGCAAACGATTTGGGAACAATTATTGCT 12015 29 96.6 32 ............................C ACATACAACCCTAACCACGTTGCACCACCTGA 12076 29 100.0 32 ............................. TACAATCCACGTGCAGAATTTTATACCAATTT 12137 29 100.0 32 ............................. AATATTTATCACGTTGTAGGACGCAAAGGTAG 12198 29 100.0 32 ............................. AAAATTTATGATCTGTACTATCAAGCTGGTAT 12259 29 100.0 32 ............................. ACTGAAAGCGCCGGCGCCGATATCAATTTTGG 12320 29 100.0 33 ............................. ATACACGACCGTTATTTTCAACTACAAAAATAT 12382 29 100.0 32 ............................. ATTCATAGCATTAACAGCCTTTTCGATAGCAC 12443 29 100.0 32 ............................. ACACGCAAAGCTTTTTCAACAATGCGAGCCCA 12504 29 100.0 32 ............................. ATCTGGTCTGTAATGAAGATAGTTCTCAACCA 12565 29 100.0 32 ............................. AATACCGCATCAGGACGTTCTTCTCGCAGGTC 12626 28 75.9 0 .................AT.-T...CTG. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTGATGAAGATAAAATTTTGTCGATTGGAGCAATTAAGATTTATCATAATGTAGTTTCTAAATTCTACCGCGAAATTAAGGTGGATTGTCAAATTCCAAGTAGTATTTCAAGGTTGACGGGTCTTACAAATTCTATCTTAGATAAAAGTGGAGTTCGCTTAGATCAGGTTTTAAAAGAATTCATGAAATTTATTAAAGGACTTCCATTAGTAGGTTATAATGTCAATTTTGATATTGATTTTTTAGAAAAAGCTCTAAATGATGAATTGAGTCTAAGTATTAATAACCAAGTTATTGATCTAATGAGTCTAGTCAAGAAAAAAGAAAAATTTTTAAATGACTATAAGTTGAAGACTGTTTTACAGCATTACGGTATTAAAAATAAAAGACCACATGAGGCTCTGTCTGATGCAAGAGCAACTTATGAATTGGCTTTAAAACTGTTGAAAAATGGTGTTTTGCAATTTTGAGAAAGGCTTTGTATCAAGGATTTTTTAGT # Right flank : TATTTTTACAGGTCAGTTAGTAGATTTACCGACAATAGCTAAAGAGACTAATAATTTAATTATTACCGCACAACACATGGATTCTTTAAAGCCAGGTAGAGGCATGGGTCATGTTTTACCAGAAGCTCTTGGTCATGTAGGAATTAAAGCCGTCGTTTTGAATCATGCTGAAAAGCCTCTGACGATTGCAGAATTAGATGCAACTATTAAGAGGGCAAAGGAAGTGGGGTTAGCTACTATCGTTTGCTCAGATACAGTTGAACAATGCCGTGCAATTGCTGAATTAAATCCCGATGTCATGATTTGTGAGCCTGATAGTTTAATTGGTACGGGGAATAGCAGTAATGAAGATTATATTAAATCGACAACAGCTGCTGTTCGTTCAGTGAATCCCAATATTTTAATTATGCAGGCAGCTGGCGTAAGTACCGGTCAAGACGTTGAAAAAATTATGCAACTTGGTGCTGATGGCACCGGTGGAACTAGTGGCATTATTAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16669-17694 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRQ01000030.1 Lactobacillus acetotolerans DSM 20749 = JCM 3825 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16669 36 94.4 30 ...................A..............A. AGACGCTGGCACAACCAACAATGCAATTTA 16735 36 91.7 30 ...................A..............AT GCTGAATCATCTTTGAAAGATTCATCGTCA 16801 36 97.2 30 ..................................A. AAGTGCCATAATTAATCAGGATTTGAATCT 16867 36 97.2 30 ..................................A. AAGTGCCATAATTAATCAGGATTTGAATCT 16933 36 97.2 30 ..................................A. ATTCAAAATGGCCAAGCTAAACATTATCCC 16999 36 100.0 30 .................................... TCAGTGATGTTAATGAATAGCCTAGAAAAA 17065 36 100.0 30 .................................... GTTTAGCAGAAGCTAAGCATCTCAATATCA 17131 36 100.0 30 .................................... ATTTATAATGAGATGTCGGTACAGATTCAA 17197 36 100.0 30 .................................... TGCGACTACAACACAATCTCAACCTACACA 17263 36 100.0 30 .................................... TGCGACTACAACACAATCTCAACCTACACA 17329 36 100.0 30 .................................... AGGGCCCGAGACAGGAAGCACTTGTTTCTG 17395 36 100.0 30 .................................... CAAGCTTTAGGAAAGCCTTTTCAGTTTTAC 17461 36 100.0 30 .................................... CCAGTTGCCGGGCACCACGTTCTTCGAACT 17527 36 97.2 30 ..................................A. AATTATCGGTTCTACGTTTATGCTCTTCAG 17593 36 97.2 30 ..................................A. TCCTGGTGATAAAGATGATCCATTTGCAGG 17659 36 83.3 0 ..................T....G.GCT......A. | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.2 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Left flank : ATTTGGTGGACAACAAGTATTTAAGGGTAAGCACTACACCAATTATGGTGTTGCAGCCGCTGCAGTTCGCTTAATTCAATCAATTCTTAATGATTCTAGAACTGAATTGCCAGTTTCAAGCTATCAAGCTAAATACGGTACTTATATGTCATATCCTTCAATTGTTGGTCGTGACGGTATTGTTCAATCAATTGACCTGCCATTAACCGATGAAGAAGAAAAACAATTAAAGGCTTCTGCTGAAACAATTAAAGCAAAGTCTGAAGCTTAATTAAGAATAATATTAAGTATATTTAGAAATAGATGGGTTTATAAAGCTCATCTATTTTGTTTATAAAAATTGATAAATACCTAGATTTCAAATACGTTTGTACTATATAATTTAAATAGTAATGGTTATAGCTTAACGATTATTTATAGTTAGTTGCTTGTTCTTAAGAAATTTCATTAACCTTATTTGATTGTGACAGTTTTTATTAAAAATTAATGATAAAATATCG # Right flank : CGTACGTAGCAAAACCAATATGGCGGACTTAATTTTAGATATCTGTTAGATCAAAAAAGGCGATTTTAATTAATCGCCTTTTTCTTACGCTTTCTTTTAAAATTCTTAACTTTTCTTTTAAAATTCGTTTTACTGACTGGTCAATTTGCTTTTCTGATATCTCTTTATTTTTAACTGCTTGTTAATTGCTGGAATTCTGTTTTTGTAATTTCCTCCTAAAAGTAAATAATTACCTGCTTTTAGAGCTAAAATATCAGCGTTTGTGTGGTGTAATTTAGTATATTGTGTAATTGCACCCATTTGAAGATCATCAGAAATAATTAAGCCATTGTAATCCAATCTTCTACGTAAAAGTTTATGAACTGTAGATGAAAGGGATGCAGGTAGCTTAGGATCCATGTTTTAATAATAATGTGTGGGACCATGATACCATCTGCGCCAGCTTCAATACCAGCTTTAAAGGGCAACAGATCTTCGCATTCATAATCTTTAGGAGATTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //