Array 1 490-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPN010000013.1 Pseudomonas cichorii strain LCYJ13 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 489 28 100.0 32 ............................ ATACCAGCCCTTTGCCTTATGCTTACCGTCCG 429 28 100.0 32 ............................ ATTACACAAGGCGAAAAGGCTTTCGGCTTATA 369 28 100.0 32 ............................ ATTGCAGCGCCACCCTGTTTGGGTGCTGCCAC 309 28 100.0 32 ............................ ACAGCCTCTTTGAAGCGGAAGTGGCCTAAATG 249 28 100.0 32 ............................ AGTCCGGGCAGTTGGCTTTGAGGAATGCGTTC 189 28 85.7 0 ...........CA..A..........G. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CATATGAGGTGAAAAAAAGAGGGTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGTTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGTATACACAACACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGCTGTACATTGAAGTCGCCAGCAAGCTGCCTTGTACAAAATGATTTATCAAAAAATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAGTGAACCCTTTCTTGACCCTCTTTTTTTCACTATCGGTTCGTCTTTTAAAAATCAATGATTTACAGATATCGATAAAAAAAGGGGTAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AAGCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCAATAGATATCCATCGCCTGAAGCACCGTCTTCGCGACTGAAGTCGCTTGTATGGTAGAGCTTGAAGGGGTGGTGGGACGAACAATTCGCATCTGACTGCAGCCACAGTACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1097-2203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPN010000013.1 Pseudomonas cichorii strain LCYJ13 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1097 28 100.0 32 ............................ AGACTCAATCGGGAATGTCGTGACGTTGACAG 1157 28 100.0 32 ............................ GCATGGGCATCGGCGGTCTGCACAGCAAGGAA 1217 28 100.0 32 ............................ TGGAGATACGATCATGCCAACAGTACGTAACG 1277 28 100.0 32 ............................ ACGGGGTATTTGGCCATCACTTCGCGCATGGG 1337 28 100.0 32 ............................ TAGATAAACTTGGTCATTCTGATTGGGAAGTT 1397 28 100.0 32 ............................ AGGTTCGGTCGCACAAACAGCACTCGACGCGT 1457 28 100.0 32 ............................ AACTGGAACCCGTTCAAGTTGGACCTTGAAAA 1517 28 100.0 32 ............................ AGACCGTGACCGCGCCCAACCAGGCCAGTTTG 1577 28 100.0 32 ............................ AAAGAACGATCCCATCAGCAACATGGGTCAAC 1637 28 100.0 32 ............................ ACTCTGGGTGTGAAGTATGTGGGGGCTGGATT 1697 28 100.0 32 ............................ CAAGTATCGGGCTAACGCTATGACCTGTTCTT 1757 28 100.0 32 ............................ TTGCCGGTGAAGTACAGGCCGCGGTCCCCACG 1817 28 100.0 32 ............................ ATGAAAACCGGCTTGCCCAGATAGGTAGCCAG 1877 28 100.0 32 ............................ CAGTTGAGTGTGAGCGCCTTCAGGGCTTTCCA 1937 28 96.4 32 ..........T................. TTGCAGGCAAGGCGTGGCGGCGGATAGGCCAT 1997 28 100.0 32 ............................ AGCGCTGAGCGCCAGGCGAAACTTGAGGAAGC 2057 28 92.9 32 ............C....T.......... ATGTCGCCATCTTCCCAGTAGTAGAGGTCCAC 2117 28 92.9 31 .............C........C..... CCGTCCGCAGACATTCATCTAATCATTCATT 2176 28 82.1 0 ...........AAC........C.C... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCGATAGTGAAAAAAAGAGGGTCAAGAAAGGGTTCACTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCATTTTGTACAAGGCAGCTTGCTGGCGACTTCAATGTACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATACCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTCACCTCATATGCACCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGATAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : ACAATCAAATCCACCCCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGGCTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 12018-10911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPN010000013.1 Pseudomonas cichorii strain LCYJ13 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12017 28 100.0 32 ............................ AATACTGGACTATTCATGGTGTGAAGCATTAT 11957 28 100.0 32 ............................ ATGGTGAACTGGTCGTCGGTGATCGTCGAACC 11897 28 100.0 32 ............................ AGCGTAGGTCGAAATCTGCAAGATCCAGTGAC 11837 28 100.0 32 ............................ AACCATCCCGCCTGCGCAATCGCTGCCAGCCG 11777 28 100.0 31 ............................ TTGACGAACAGACTGCGTACCTTGCACGTTC 11718 28 100.0 32 ............................ GTCGACAATGACCGTCTCGGGCACGTCAAGAC 11658 28 100.0 32 ............................ ACTCGCCATCGCCGCTGGCCTGAAGCTTCGTC 11598 28 100.0 32 ............................ AACATGAGCAAGGTCTACGTCCGGCAGCTCAA 11538 28 100.0 32 ............................ AGTCGCGGCAGGCCGCCCAGCAGTCGAGCAAG 11478 28 100.0 32 ............................ ATGTCAGAGCACCCGCTTTTTCTGGTCATTCG 11418 28 100.0 32 ............................ TGGCGGGCGCCCTTCTTCTGCGCAGATACTTC 11358 28 100.0 32 ............................ GATCAGCACGGCCATGTGTTGAACCGCATTTA 11298 28 100.0 32 ............................ AGTACGGTGGCTACGGAGTTTTAGTCGAAGCC 11238 28 100.0 32 ............................ CGGTTGCCACGATCCTTCCACCGGTTCGCCCG 11178 28 100.0 32 ............................ GTGCTGAACAAGCACCGATCCGGCCCCGTCCA 11118 28 100.0 32 ............................ TGATAGATCCGCCCATTTGCAAGCGTCATCTC 11058 28 82.1 32 G.G.........G....T..T....... GTCAGCCCCTCGTGAGAAGGGCTGCAAGTGAA 10998 28 85.7 32 G.G.........G....T.......... TCTACGGCCTCGGCCCAGCGCGAGGGCTAGGC 10938 28 89.3 0 ...........C..........C....T | ========== ====== ====== ====== ============================ ================================ ================== 19 28 97.7 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGACATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAGGCTGTCATGTCGCTGGGGACTACATCAGAAAGCACAGCGATGTCCCAGAGCTTGCGAACATCTACCCAGTGGTGAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGGTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : TTGGCCACCCCAGCGGGATGACAAGGGCCGCACACAGCCCCAAACCAAAGCCCTCGTAATAACCACACTACAAGGGCTTCAGCCCGCATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //