Array 1 229337-231703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMS010000002.1 Clostridium paraputrificum strain 1001302B_160321_B11 NODE_2_length_297304_cov_27.3049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 229337 30 100.0 35 .............................. GATGCATTTAAAACTGATTTACTTGCAGCATGGGA 229402 30 100.0 36 .............................. ACTACTATTTCCATTGGGATCTCTGGATTATCTAAC 229468 30 100.0 35 .............................. GTAAAAAATGTTACACTTTAGGAGGCAAAATATTA 229533 30 100.0 33 .............................. AAGAATTAAATTCTCTAAAAACCAAAGAATTTT 229596 30 100.0 35 .............................. GTATTTACCTTAGTAACCATTTGCCCTGGAACTTG 229661 30 100.0 35 .............................. CTTTCATTAACCTCTAAATCAAATATAGTTGAATC 229726 30 100.0 36 .............................. ATGTTTTAGATCTTAATGTGTAGAAAGTACGACATA 229792 30 100.0 35 .............................. AAAGTATCAGTCTTTAAGTAAAAATCCCCTGTCTT 229857 30 100.0 35 .............................. TTGTTTCTAAGATTAACCAGGATGAAGGAGTAAAT 229922 30 100.0 35 .............................. AGAGCATTCTGAATAATAGAGCCTATAGCTCCATA 229987 30 100.0 35 .............................. GGCCTTTTTACTATACACTTACAATTTTCATCTGC 230052 30 100.0 36 .............................. TTAGTCATATCACGACCATTAACCCAATAAGCAGAA 230118 30 100.0 35 .............................. ATGTGAAGATGGACAAGAATATGATGCTGAAATGG 230183 30 100.0 36 .............................. AAAAACATAGTAACCACTCCTTAATTTTAAAAAAAG 230249 30 100.0 35 .............................. TAATTAATGTAGGCTCTGGTAATGTTGCTCTTGCT 230314 30 100.0 35 .............................. TATATTCACTAAGTTTTTGGTCTTCTGGTACTTCT 230379 30 100.0 34 .............................. CCTTTTCTAAACCTCTTTTATTTAAAAAACTTTC 230443 30 100.0 35 .............................. TTGAAGAATCTGTGAGAAAGAACGCCACAAACATG 230508 30 100.0 36 .............................. GTCATCCGAAAAAAAGTATAATGATATTTTAAAAGA 230574 30 100.0 35 .............................. TTGATTGTTGGTTCTTCCCTCTTTTGTTGTACCCC 230639 30 100.0 35 .............................. TCAATAGCTCCAACCTTATTGTAAATTTTAAAACT 230704 30 100.0 34 .............................. TAGAAAATGAAGAAGTTATAAGAGCTTATAAAAA 230768 30 100.0 35 .............................. ATTTAATTTGCAAAGAGAATTTAATAACTATAAGA 230833 30 100.0 35 .............................. GCAAAAAAGATGTAATTAGAAACGAATATTAAATA 230898 30 100.0 28 .............................. TCTAGTGAAAGATATAATCCATCTTGAA 230956 30 86.7 35 .TGG..G....................... AATATTAAAGAAACTTTCTAAAGATAAAAACTTAA 231021 30 100.0 35 .............................. AGAAATAAAATTAAAAACCAAAAATCTGAGTAGTG 231086 30 100.0 35 .............................. AATGTATATATAAAGTCAATACAATTATTATTTAA 231151 30 100.0 35 .............................. GAGGATTTAAGTTTGCTTATGGGTATTTTTAATGA 231216 30 100.0 36 .............................. AATGTTCTTAATTTAACGCCTGTTTCTTCTTCAAAG 231282 30 100.0 35 .............................. AAACCATAACTTGTCCGAACTATTTCTTGCACTTG 231347 30 100.0 36 .............................. TATCTCGTAGCTTTCCTGTATCTATAGGTGGCCCTC 231413 30 100.0 35 .............................. ATCGTTTCTAATCGTGGACTTTTATCCCTAGAAAT 231478 30 100.0 36 .............................. TTTTTTTATTACCTCCAATATTTTTTCTTATTCTAG 231544 30 100.0 36 .............................. TTGTTCTTTAATGCAGGGTATAAATAAGGTTGAGCT 231610 30 100.0 34 .............................. TCTTTAAGCAACTTAAAAACAGACAAACTATACA 231674 30 90.0 0 .........A....A.....A......... | ========== ====== ====== ====== ============================== ==================================== ================== 37 30 99.4 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : CATAAACAAATAAATATATAAATATAAGAAGATATATTGTTATATTTATATAAATATATGTTTTTGTAAATATATGAATATACCAATATATAAATATGGGAAGCTCTAGAATTATTCTAGGGCTTCTTGTTTTATCTTTAGGAAATCATAATTGCAATTAAATTGTGATAGCTTCAATATTTTATTGCTAATGAAGTTTCATTTGATCTTAAAGTATAAAAAATAAAATATATGCAAGGAAGATTTTTCAGAGACAAGCTTGGAAAATTCATAGAAGCAAAAAATCACGACTTCACAATGGCCTCGTGAATTTTTTATAAATAAAATTTTACCAAGTGATCTTGAAATGAAAAATCTTGAATCAACTGTTATTACAGTGATAGAAGATGAAAAAAGAAAAATGAAATCCAATATTCATTTGCTTGGTAAAAAATTTGTAAAACTTGAATTAATAAGTAATGGGAGAGATAATAGATTTATTGAATGGCTTTTTTCCAATG # Right flank : TAAATGTGTCACAATATATTTACAAGTATATGTATTAAATGTAAAATTATACACAAGGAGGTGATATAATGAATGTTTTTGAAATAAAATTAAAAGTATTTTTATTAAAAGATATAGAGATTAAAGAGATTCAAACAGTAATTTCATCATTTATTGATAAGTCTCTTGCTAAAGATAAAGAATTATTAGAGTTACATAATAAGAATACTTTCAAGTATTATTGTTTTGATAGTTTATATCCTATAGGTGAGAATAGTTTATACAATGGTGAAAACGTTTATACCATTCGCATTAGGACAATAAGTAGAAAACTAGCGGAGTATTTTTTAGGTGATTTGCCTAATGAATATGATGAAAACTTAAAGGGATTAGTGGCAGAGATAAAAATATTGCCTAAAAAACATTTAGATAAGATATATGCTTTAACACCAGTAGTTATAAAAAATAATGATGGATATTGGAAAAATAAGATTGCTTTAGAAGAATACGAAAGAAGATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 240504-242293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMS010000002.1 Clostridium paraputrificum strain 1001302B_160321_B11 NODE_2_length_297304_cov_27.3049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 240504 30 100.0 35 .............................. TTGGCTACAAGCTGGTTGAATAATGCTTTAGCTGC 240569 30 100.0 34 .............................. AAGTAAATATTTTGAGATATTAACCCCTTTGTTT 240633 30 100.0 36 .............................. CAGTAAATAGTGCATTAGCACAAGTTAAAGGATCAG 240699 30 100.0 34 .............................. TGATTAGCAGTATATAATAAAATTAAGATAAAAA 240763 30 100.0 34 .............................. AGTGGTGATGATTCTAGTATAGTTGATTTATCAA 240827 30 100.0 35 .............................. GAGTTATTATACAAGCCTTTTAAGTCACGTATACC 240892 30 100.0 36 .............................. ACTAATTGTTTTAAGAAATTATGAACTATACTATCA 240958 30 100.0 35 .............................. TATGCTTACTAATGCTATAGGAAAGAAAAAAGAAA 241023 30 100.0 36 .............................. TAGTTTAATAGGGTTTGTCTATTCGTATCTAAATAC 241089 30 100.0 35 .............................. TTGTAATATCTTTGTATAAGTAGTGGCGTTAATTT 241154 30 100.0 36 .............................. TATCGTATATTAGCTGGTATTATTGCATAATAAGAT 241220 30 100.0 36 .............................. TTTAAGGATAATGAGAAGGACTTATATGAATTTTTA 241286 30 100.0 35 .............................. ATACTAGCTGGTAAAAACTTTTATATTCGTGATGA 241351 30 100.0 36 .............................. AGGGGATAAATCGTATCCACCATTTATAACATCAGA 241417 30 100.0 33 .............................. AAGTAAACAAGAATGGTGGATAACGAACTATAG 241480 30 100.0 36 .............................. GTTTTCAGGCTCAGGAAGTGTTGGAGATGCATGTAT 241546 30 100.0 35 .............................. AATTAATCCAAAGGAGATTGAATAAGCTTTTAAAA 241611 30 100.0 35 .............................. TTTGGGCGCAATATCTTCCTGTTATAATAAACTTA 241676 30 100.0 36 .............................. GTCATACGCATACTATAATACTTAGACTTATATACT 241742 30 100.0 35 .............................. CTAAAATCGGCATAGTGTATGTCGGTAATGAAAGG 241807 30 100.0 35 .............................. TAATTAACACTCCTTAAATATTATTATTACTTAAC 241872 30 100.0 35 .............................. ATTTGATAAGAACAGAACAAGTTTTCCAAGGTTAG 241937 30 100.0 34 .............................. CTTGTTGATGCTACAAGTATTTGATGTGGCTTAA 242001 30 100.0 34 .............................. TCTGCATTTAAAACTACAAAACAGAAATTTTTTT 242065 30 100.0 36 .............................. GTTGGAGGAAGAACTCCATGTAGCAAGTGTGCTAAC 242131 30 100.0 36 .............................. AGAGCAATCAAGTAAATTGGTTTTAAATGGGGAGTT 242197 30 100.0 37 .............................. ATAAAAAAATATCATAAAAATAACAAAAAAACCGTAA 242264 30 93.3 0 ...............A.........A.... | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.8 35 GATTAACAGTAACATGAGATGTATTTAAAT # Left flank : TGTTCCTTTTAGCTTAAAGGAGGGAATATAATGGGCAAGCTGACTAATTATAATTATGCTTTTGTTTTTTATGATGTAGGGGAGAAAAGGGTTAATAAGGTTTTTAAGGTGTGCAAAAAATATCTATCACATTATCAAAAATCTGTTTTTAGGGGAGAAATGTCTCCATCTAAGTTAATAAACTTTAAGAAAGATATTAATAATGTTATAGATAAAAACGAAGATTTTATTTGCATAATTAAATTGATGAATGAAAGCATATTTGGTGAAGAGGTATTAGGCGTTAATTATAAAATAACAGGTGAGGATTTAATTATTTGAATTTTACCAAGCGAATTTTCGTGGGAAGTGTATTCAAAGCTCCATATAATCAATGTTTTAGTGGAACTATATTCATGGTATTTTAATTTTGTAAAATACTTGGTAAAATAATTAAAGAAGATAGATTTTATCAGGGTTATACTAATATTAATAAGTGCAAAAATGCCATTAAACCGTTG # Right flank : TAAGAAAAGTGAATTTTATTTTTGACATCTGTGTGAAGCTAATATAAACAAGAGATGTATAGAATAAGATAGCATGTCTTTATTTATCATAAAAGAAAAACCTAGAAAACTAGTTTTTTCTCTGTGAAGGAATATAACCAATAAATTAGTTTAAAAGAGAAAGCTGTATGTTTAAGATATCAATTTAGTCCTTAAAAAATTATGTAATAAATCTTTGCCAGTTCTAGTCTTTATAATTTCTTCCATCCTATCCAAACTAATCTCATAATATCCTTCTTCAAAAACATTAATCATAAGATCAGCTTCAACTAAAACTTGAAAATCCATTCTATCAATTTTTTCATAGCTGTGATGCATCTTTATTAAATAAAGTATTCTATGAATTGCTTTTTCTTCATATCCAGCATCTTTTAAGAACTCACGAGCTAATAGGGGAGCCTCTTTTCTTTGAAGTTCTTGGCTTGCATCTCCATATTTTTCTTTGCAAATTTTTATTCCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //