Array 1 237550-237338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470348.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237549 29 100.0 32 ............................. TCAATAATACACCTAACCCGGCCCGACACAAC 237488 29 100.0 32 ............................. CAGAACCAGAACCTGATCCCGAACCAACACCC 237427 29 100.0 32 ............................. ATAATTAGGCAGTTTCTTATGAGACTTTCTAA 237366 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCCGGTGGAGCGAACTACGCCGGAGAGGATGCAGGAGGATGGTAGTTCTGATCCTGTCGGCAGCCCCCGCCTCGTTGCGGGGATCCATGACCCGTTGGCTGCTTGAGGTCTCTCCCGGGATCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGCTGTGGGAACTGGTCCGCACATACATCGGGGAAGGGCGGGCGCTGCTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGCGGTCGCCTCCCTGGGGCATGAGCGTGAACCTGTCGACATCGAGGGGTGTCTTGTTATGCGCAGCCCGTACCGGCAGATCGGGGGAACGCAGGCGATTCCCGGTGCCGTTAAGCCTCCGAAGGAGTCATGGTCGATCGCCGCAAGACGACGGCGCTACCGGAACTCGGCGGAGCGGGCTCTAGGCCAGCACTGAAGGTAAACGCGGTCTGGTAGCATGGCTCATCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : GCGATGATTTCAAATTCGCAGGCTCAGTCTCAGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255151-254574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470349.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 255150 28 96.4 33 ..............G............. CTTACCGTCAGAGGCCCCGATCGCGATCTCGAT 255089 28 96.4 33 ......................C..... ATCCGCCATGTCGCCGATCTTGACCTTCGGCAT 255028 28 96.4 33 .C.......................... GCCGCCTGGACCCTCATGGCCACCCCCAACCTC 254967 28 100.0 33 ............................ CCGGACCGTGGGCATCGGGCAGCTGATGGTCTC 254906 28 96.4 33 .......................T.... CGTTGGCTGGCTGCTGCCGGTAGGCGTCCGGTT 254845 28 96.4 33 ...........T................ GGACGCTAAGGAGGTCCTGGAGGACCTGAAGCC 254784 28 100.0 33 ............................ CGGAGATCATGGGAAAGTCGGCGGCGAGGCTGG 254723 28 100.0 33 ............................ GTGAATCCGCCCCTACCGTTAATTTATCCATTC 254662 28 100.0 33 ............................ GATAGTACTTAGCACATGTGCTAAGTAGGTTTG 254601 28 89.3 0 .......................CC..A | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 33 GTCAGCCCCGCGCACGCGGGGGTAGAGG # Left flank : GGCGGGCTGGATGCTGCCACTCATCGGTGGGCTGGGCCGCCGCCACCTGCCCGTCCTGCGGGGGGTACTCGTGGCCGGGGGGCCTCGGCCTCCCTGCGTGGGACTCGCGGTGAGAACGGGGGTGGTTGAGGCGAGACTTGCCGAGACCAGGACATTGGCTTCCCTGCCGCGAGTTCTGCGGGCCGCCACGGCTCCTTTGTCGCAATGGACCACCGTTGTGCCGACGGCGGAGGATCCTGAAGGCATCATGCGCATGCTGAAGAAATGCGCCTCGGGGCTCGGCTGCGGACTCGTTGAGGTTGAGCGGCACTCCGAGTCGCGAAGCGACGGAGGCATTGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCGCCTTCGACGCGGTGGTGCCCGGGCCGGTTGTCTTCGACGGCGCTCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCAAGGAGACCCCGAGCCGACTAACATCGCAGGTCAGCCA # Right flank : CACGGACATGCGGCTTGCGCTGTGCTGGGCCAGGCCCGCTGGCCCAGGATGCCTATTGCACGAGGGTGGGGTTGTACTGGCCAGGGGCGGCCGGGGTTGATCGAGAACGTACTTCTTCCGCGAGAACTGCGTTATCCCGCAGACGACTGGGGGCAGACCCCAGTGGTCTGCGGGAAAAGTACGTTCTCGAGGGGAATCGCAGTTCCCGATGCGGGAGCGCTGATCCCTGCGCCGTCGGAACGGTCGCCCGCCGCCCCGCCGTGCCGGTCTACTTGGTGGGGGTGCGGCCCAGGGTCAGGTAGCCGGGGAGCGTCTGGTCCTGGCCAGCGCTGGAGAACCGCAGTGGCTGGCCCGATTCCAGTGGGTTGACCACGCGCACCAGGATCGTATTCTCACCCGCCGGGTCCTCCGGGAGCTGGCCGGAAAAGGTCTGGGTCTTGCCGACCTCGATCTTGCGCAGATCGCCACTGAGCGTGGTGCGCCCGACCTCCACACCGGTC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCACGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 23397-23998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 23397 29 100.0 45 ............................. TCCAGCTCTGTGACCGGCTTGGGGTAGTGTCTTGCTTGTCAGAAA 23471 29 100.0 35 ............................. GCTGCAATGAGCAGCAGCCCCAGCGCCTTAGGGTC 23535 29 96.6 38 A............................ TTGATCGGCTCCTCTCTGCATCCATTTGGAGTCAGAAA 23602 29 100.0 46 ............................. GAGCCATTCATCTCCAGTGACGGATAGGTGCACGACCTGTCAGAAA 23677 29 100.0 44 ............................. CCATCCTTCCAGTCATTCGCAATCGCGAATAGAAGGGGCAGAAG 23750 29 96.6 44 ..C.......................... GGCTTCAGGAGGTAGCTTGCGCCACCCCCGATTCTGGTCAGAAA 23823 29 96.6 43 ....................T........ GTTGAGGTAGGCATGATGAGTTCTCCTTGGGTTCGGTCAGAAA 23895 29 96.6 43 ................A............ GCAACACCGTGACCCTGATGACCCTTAATCCTGACGACAGAAG 23967 29 75.9 0 .....TC.......CGA......C...T. | CA,A [23975,23988] ========== ====== ====== ====== ============================= ============================================== ================== 9 29 95.8 42 GCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CTGCCCCAGGCGGCGTGAAGGCGACGGGGGGTGGCCTCGACCGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGTTGAGTGGCGGACATGGCCGTCTACCCCTTAACTTCTGGCGACCCTACCGGAGGGAAGGCGGCGAGCGCAGAGACTTGGGACGTCGACGTTCTTCAGCATCGAGGGGCAGGAGGAGACGGAGAGGAAGGGGCCCGGCAGCATGCCGAAACGGCAGCACAAGCGGATAGTGTTCGCAGTCACAGGCCAGAACGTCGACTTTTTGGCTTGACGTCGTCGGAAGTTGGTAGCTGAAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCTCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGGTCAGAAA # Right flank : CCGTCTCCCGGCGGTCGCCTTGCACGCTCCAGCTGAGGGACCCAAAGCCCTGACGGACCGATAGAGGAGGCAGGACGTGTCGACAGTCACAGTCGGGAACGTCGATCTTTTGGCTTGGCGTCGTTGGAAGTTGGTGGCTGGAGGTGCCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGGCGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACAACGCCATTCCCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTATTCAGAGATCATGAGACTCTCCCCGTTCTCGAGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCTTGAAGCTCCTTCTCATCGACGACATACAGAGTATGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 24761-25234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 24761 37 100.0 35 ..................................... TTAATGTTGGCAGTGATACTGCCGGCCTCCTTCTC 24833 37 100.0 37 ..................................... AATACTAGGCAGATGCTTGTTAAGCCGCTAACACCCA 24907 37 100.0 36 ..................................... CCACAGACCGCCCCCCACAATACCAAGGAACACCAG 24980 37 97.3 37 .....................C............... AGGAAGGTGGTCATCTTCCTCTGGCAGTACTCCCGCC 25054 37 94.6 35 ...............A.....C............... AGCGCATCCCCGACATCTCGCAGCAGGTAGACCAG 25126 37 91.9 35 ...............A.....C......A........ GAGAACCTCAAGCGCCGCAGCTCGATCTCCGTGCC 25198 37 81.1 0 ..........................CCT...G.CGG | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.0 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : TGGCGCAACAACGCCATTCCCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTATTCAGAGATCATGAGACTCTCCCCGTTCTCGAGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCTTGAAGCTCCTTCTCATCGACGACATACAGAGTATGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGCATTAAGACTTAATGTTGGCAGTGATACTGCCGGCCTCCTTCTC # Right flank : GGACTCACAGCCCATCCTCATCTCCTTAACAAGCTGAGCGACCAGGCAGCTCGGCGGAGGAAGCGCTCTTGACACCGAGTCCATGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGACCGGAACGTCGACCTTTTGGCTTGACGTCGTTGAAAGTTGATAACTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACACCAAAAGGTGATTAAATAGGGGCAGTGCCGGCAGGTCCCGCGGGGTGCTTGCGAAGCCGGTGGCGCTCCAGCCCCCGGAAGTGACGCAACGACGCCACCCCCAGAGGCAGGGGTCAGAAAGCACCTAGCACCACGAGGTGCATTGAGACTGTAAAGGATCCAGACCAGGGTGGCCGCATATGACAGTCAGAAAGCACCTAGCACCACGAGGTGCATTGAGACAAGCATAGGGATCTCCTAATAGGGATGTAGAATGAAGTCAGAAAGCACCTAGCACCAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 25566-26191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 25566 37 100.0 36 ..................................... TGTAAAGGATCCAGACCAGGGTGGCCGCATATGACA 25639 37 100.0 36 ..................................... AAGCATAGGGATCTCCTAATAGGGATGTAGAATGAA 25712 37 100.0 37 ..................................... GCATACTGGATACGGTTTGCCGCGACAATCGATACCA 25786 37 100.0 37 ..................................... CCTACAGATGGTCTTGAGAGCTTCACGCCATTTGCCT 25860 37 89.2 35 .............C.......GA.........A.... GGGCTCTTGCCATCGTGGTCCCCGATTTGAGCCTG 25932 37 86.5 35 .........T...C.......GA.........A.... CTTATTGGCCCTGGCTGCGGTGCTTCTTCTTGTCC 26004 37 91.9 39 .............C........A.........A.... CAGGTTGAGAGCTTTCTTAGCTATCTCATGATAGCTAAG 26080 37 89.2 35 .C...........C........A.........A.... GCAACACCATAACCCTAATGACCCTTAATCCTGAC 26152 37 78.4 0 .A.....G......C..........AA....CA..T. | TA,G [26168,26175] ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 92.8 36 GTCAGAAAGCACCTAGCACCACGAGGTGCATTGAGAC # Left flank : CCAACACCACAAGGTGCATTAAGACAGCGCATCCCCGACATCTCGCAGCAGGTAGACCAGGTCAGAAAGCACCCAACACCACAAGGTGAATTAAGACGAGAACCTCAAGCGCCGCAGCTCGATCTCCGTGCCGTCAGAAAGCACCCAGCACCAGAAGGCCTATTGACGGGACTCACAGCCCATCCTCATCTCCTTAACAAGCTGAGCGACCAGGCAGCTCGGCGGAGGAAGCGCTCTTGACACCGAGTCCATGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGACCGGAACGTCGACCTTTTGGCTTGACGTCGTTGAAAGTTGATAACTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACACCAAAAGGTGATTAAATAGGGGCAGTGCCGGCAGGTCCCGCGGGGTGCTTGCGAAGCCGGTGGCGCTCCAGCCCCCGGAAGTGACGCAACGACGCCACCCCCAGAGGCAGGG # Right flank : CCGTCTCCCGTCGGTCGCCTTGCACGCTCCAGCCGAGGGACCCAAAGCCCTGGCGGACCGACAGAGGAGGCAGGACGTGTCAATAGTCACAGTCGAGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGTTGGTGGCTGGAGGCGCCCGAGGGGACGTCGGTGGCGCTTGTCGTCAGGACGCCAAAAGGTGGTTAAATAGGGGGCGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGATGGCGCTCCAGCCCCTGGAAATGGCGCAACGACGCCACTCCCCAGAGGCAGGGGGGGGGTCAGAAAACACCCAGCACCAGAAGGTGCATTAAGACCGAGCCAGGGCAGCTCGTGACGCTCAAATGCCGTCCCGTCAGAAAGCACTCAGCACCAGAAGGTGCATTAAGACGGGACCCAGCCCGGGGCCATGGACAGCCCAGCGCAGGTCAGAAAGCACTCAGCACCAGAAGGTGCATTAAGACACTTCTAGAGCACTTG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTAGCACCACGAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 26893-26491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 26892 37 94.6 38 ..T.....................G............ ATCCCGGCTGTCATCCAGATGATAGAAGAGTCCAACGG 26817 37 97.3 33 ....C................................ CGGTAGAGAGCTGCGATGGCACGTTCAAGACAA 26747 37 97.3 36 ...................................G. GAGAGAAGGCACTTGGTCTACAAGTGCTCTAGAAGT 26674 37 100.0 36 ..................................... CTGCGCTGGGCTGTCCATGGCCCCGGGCTGGGTCCC 26601 37 100.0 37 ..................................... GGGACGGCATTTGAGCGTCACGAGCTGCCCTGGCTCG 26527 37 94.6 0 ........................G...T........ | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.3 36 GTCTTAATGCACCTTCTGGTGCTGAGTGCTTTCTGAC # Left flank : CCTTTGGGGATGCCGAAGCTCAGAAGCGGATCGGGCTCGTAGGTTCCTGAGCGCAGGGACTTGGAGGGCTCGGTGAGGAAGTCATCGAGATGCTCGGCGAACTCCTTGGTCTTGCGCTGCAGGATGCCGTCGGAGGCGTCCTTGGCGAGGACCATGCGCCAGCCTCCCTCCAGGCCCTCGCGGGAGCTGATGCGCTCGAACAGGGTGCCGGTGCCCGACTCGGACAACGTAAATCCGGCTGCGTGCTGGAGCGGGTGAATGTCCTCCCCGAGGTGCTGGCCCGGTTTCGCGCGATCGGAACGGCGACGACGACGGTGCGGGCGTGATGGGGGTGGTGGTGTCGTTGACGATGGTGGTGGTAATGGCGGGTCTGGACGCATCATTGCGGCCTTTCAAAGGCGGGAACGTGAAGAGGCTCTGAGGACAGGATATCGAAATATGTGGTGGTGAAGTATGGAGGTTGGTGATCTGTGGTGGCCCGGACATATAGCCATGTGCAC # Right flank : CCCCCCCCTGCCTCTGGGGAGTGGCGTCGTTGCGCCATTTCCAGGGGCTGGAGCGCCATCGGCTCCGCAAGCACCCCGCGGGACCGGCCGGCACGCCCCCTATTTAACCACCTTTTGGCGTCCTGACGACAAGCGCCACCGACGTCCCCTCGGGCGCCTCCAGCCACCAACTTCCGACGACGTCAAGCCAAAAGGTCGACGTTCTCGACTGTGACTATTGACACGTCCTGCCTCCTCTGTCGGTCCGCCAGGGCTTTGGGTCCCTCGGCTGGAGCGTGCAAGGCGACCGACGGGAGACGGACTTGATGCTTCTCGCTGGTGTACGAGGTGCCTTCTGTCGTCAGGATTAAGGGTCATTAGGGTTATGGTGTTGCGTCTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGGCCTTAGCTATCATGAGATAGCTAAGAAAGCTCTCAACCTGGTCTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGACGGACAAGAAGAAG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGAGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 42297-42623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 42297 37 100.0 37 ..................................... TGGACACTGCTCATTGGTCGCCTCCGGCTCGGCGTTT 42371 37 100.0 35 ..................................... AGCAAACTCCTGACCCGGGGACGTTAGTACATCCC 42443 37 100.0 35 ..................................... AATGCTAGGAATGCCGTGATCTGGCGTTCTAGATT 42515 37 97.3 35 .............T....................... TTGACTTGGTGATATACCACCGCGTCAAAAAGGTT 42587 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCCTGGCGGTTCTGACCTTCATCGGCCTGCCCCTGAGCGTGTTCCTGGAGATCTGGTCCAATTGGGAGGCCGCTAAGGGCATTGCGGTCCGGCACCAGCACATCGGCGGCTGGGACGCAGGATGGGGATGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGTGGGATCTGGTTGCTCGTCGACAAGCTGGGCAGCCGGGCGGCTCGGCGGGGGAAACATTCCTGACACCGAGTCCAGGGCCCGGTTCCACCTCCACCACAGCGGGTTGTGCCTGCAGTCACAGGCCGGAACGTCGATCTTTTGGCTTGACGTCGTCGGAAGTTGGTAACTGAAGGCGCCCGAAGGGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCGGCCGGCCCCGCAGGGTGCTTACGGAGCCGGTGGCGCTCCATCCCCCGGAAGTGGCGCAACGACGCCCCTCCCAGAGACAGGG # Right flank : CACCATGCCGACCAACTTGAATGTCTCGGCGTTTCCGCGTCAGAAGGCACCCGGCACCGGAAGGCCTGTTCACGGGAATTGCCGTGCGGTGGCTGCCAACAGCGCCGGAAAACGGTCAGTCCGACCGCCAGCCCCTTGAACAGGCCCTCCGAGCCGACCCGAACCACCCCGCCACCACGGGCGCCGCCCTCCTCGACGACAACCAAGGCCTCCACCCCAGGTGGATTCGTGCCAGGTGAACTCGCAGGATTCCAGCAAGCATCACGCAACCGAAACGCCTCTACCGCAGGGACCGGCCAGCAGACGCAAAGCCAGGCGGGCCGTGCCAAGGAGCCCAGCCGCCTGCTCGTCGCCCGCTCACGGGACGCAGTCAACGCGTCGGCGGACCAACATCCATGTCCCACACCAACCCTGCTTCAGCGGCGACGCAGAGGCAGGACGATGACGCCACCGAAAGAACGGTTGCCAACGCCAGCCTTTAACTTATAACTTAAGTACGT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 6 44710-45035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 44710 37 100.0 37 ..................................... GCCTCACGCACGTCATCTTCAACATACTCAAAGAGTG 44784 37 100.0 38 ..................................... ATGAACGAATCGCTGTTCTGGAAGTCACCACAGATCCA 44859 37 100.0 35 ..................................... CTCATTCGCATCATGTTCGTTTCCTTTCGTTACGC 44931 37 100.0 31 ..................................... TGGTCGTCACGAGACTCCACGAGGTCCTCTC 44999 37 94.6 0 .............TC...................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CGATCGGCACGGCGAAGCCAAGGCACGAGCACAGTCCTTTCTTCATCACTGGAAAGACCAGTAAAACATCAAGGTCCAGGTCAGCCGTGTGCAGCAGATGAGGTGGACCGTGACTCGGAGGCGGCCGGGTTCATCGTCTCCGAGCAATGGACCATGATGACCGACACCAACAGGCAACTCGACGCCTTCCTGACCTACCTGCTGGACGGCCGGGCGGCTCAGCGGCGGAAACGCCCTTGACACCGAGTCCAGGGCCCGAATCCGCATCCACCACAGCAGGTTGTGTCCGCAGTCACGGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCCGGAGGTGCCCAAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : CTGATAGAGCGGGCCGATGTAGTTGCAGCTGAAGTTTGTCAGAAAGCACCTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTAAGACTGATAGAGCGGGCCGATGTAGTTGCAGCTGAAGTTTTGTCAGAAAGCACCTCGCACCAGAAGGTGCATTAAGACTGGTCGTCACGAGACTCCACGAGGTCCTCTCGTCAGAAAGCACCGTCGCACCAGAAGGTGCATTAAGACCTTGCTCTCCACACCAGGAGGCGCCACCGGCCCCGAGTCAGAAAGCACCTCGCACCAGAAGGTGCATTAAAACGATGAACTCTTGACCGTCTGTGGTAGCGGTCGGATCAGAAAGCACCCAGCACCAGAAGGTGCATTAAAACCATGCAACGGCCCAGATAAAGAACGGAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 7 45258-45789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470356.1 Actinomyces sp. oral taxon 849 str. F0330 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 45258 37 100.0 31 ..................................... TGGTCGTCACGAGACTCCACGAGGTCCTCTC 45326 37 100.0 36 ..................................... CTTGCTCTCCACACCAGGAGGCGCCACCGGCCCCGA G [45339] 45400 37 97.3 33 ..................................A.. GATGAACTCTTGACCGTCTGTGGTAGCGGTCGG 45470 37 89.2 33 A............CA...................A.. CATGCAACGGCCCAGATAAAGAACGGAATTGAT 45540 37 94.6 35 .............CA...................... AGCAACGCCAGCGCGGGCTGCCTGAAGGGCATCCC 45612 37 94.6 32 .......G.....C....................... ATTTTTTGGAATTCTACGGTTGCGTAGAGCTC 45681 37 94.6 35 .............CA...................... GCCAGTGCTGTTGCTGTGGTTTTGCGAGCGTCTGA 45753 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 96.0 34 GTCAGAAAGCACCTCGCACCAGAAGGTGCATTAAGAC # Left flank : GTCATCTTCAACATACTCAAAGAGTGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACATGAACGAATCGCTGTTCTGGAAGTCACCACAGATCCAGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCTCATTCGCATCATGTTCGTTTCCTTTCGTTACGCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTGGTCGTCACGAGACTCCACGAGGTCCTCTCGTCAGAAAGCACCTCGCACCAGAAGGTGCATTAAGACTGATAGAGCGGGCCGATGTAGTTGCAGCTGAAGTTTGTCAGAAAGCACCTCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTAAGACTGATAGAGCGGGCCGATGTAGTTGCAGCTGAAGTTTT # Right flank : CCGAGGGATAACCTCCGCCGTTGACGCCATCGTCAGTTGCCAACAAGGCCAGCAGATGAGCGGAGATCGGTGTCCACTCAACGGACATGAACCTTATGGAGGTATCGGGAGCCGAGCGAGAACCGCAGAACTTCGCGGTTTTCCGCCCACCACATCGCCGGTAGCCTCGGCCATGTCCGCTACATGGACACCGAACCACTCGTGCGCCGCAGGACAACAGCAGGGACGACCACAAATCCGTTGACGGCAAGCACCATGCACGCGTTGATCTCAGGTGGATTCGCGCCAGGTGACCTCACAAGATTCCAGCAAGCGTCATGCAGCCGAAACGGCCATACCGCAGGGAGCCCGGCCATCAGGCGCTAAAAACATGGGCGGCGCCGAGAAACTCGGCGACCGCCCCCTCGCGCCCACTTGTCGCTCGCTCACGAGCGCCGTCAGCACACCGGGCAGGCCAACGCCAGGCCCCGCACCAGCCCGGCTTCAGCCGCGGCGCAGAC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //