Array 1 5724-4055 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKD01000007.1 Vibrio navarrensis strain VN-0414 NODE_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5723 32 100.0 33 ................................ ATTTTCGGCTTTAGATAAGATGTCAGCCATTTC 5658 32 100.0 34 ................................ GGCAAGCGTACCGCTTGATTCTTGCCATTTTTAA 5592 32 100.0 33 ................................ AGGCAAAACAGAGATAAACGGCTCAATACCTTG 5527 32 100.0 34 ................................ CAAAAATGCCAAACTTGACAGGAATATTAGTCCC 5461 32 100.0 33 ................................ ACGAAGTGCTTTTGTTGTGGTGAGCTCACCAAC 5396 32 100.0 35 ................................ AACCATGTAAAAGATGTAGCACGTTATGGATCAAT 5329 32 100.0 34 ................................ CTTTGAACCTACAACACCACTATTTCTTAAGCGC 5263 32 100.0 34 ................................ ACAAAGTTATCCAACAAATGACGCTCGTTCGGAC 5197 32 100.0 33 ................................ CAGCACTGTTAGCGGCTTGGTTCTTCCAAGTTT 5132 32 100.0 33 ................................ ATCCCTAAATTATTACCGATTGTAATTTATTTT 5067 32 100.0 33 ................................ GCGCCATTATTTGAAGCGCTAGAGGGGCAGAAA 5002 32 100.0 34 ................................ CTGATTCGCATCCTGACAAGCGTCCAGAAGGGGA 4936 32 100.0 34 ................................ CATAATCGCACTTTCGAAAATGTTGAGGCCAAAC 4870 32 100.0 33 ................................ TTCGTTGATTAACCAGCGCGAGCCTTGGGCCTT 4805 32 100.0 33 ................................ AGAATGTCGTCGCTCTGATTCAACTCAATGATT 4740 32 100.0 33 ................................ TGAAAGTAGGCCGCTGGTTTGGTTAAAAAAGTG 4675 32 100.0 33 ................................ TGGTTTAAGCTGTCTAGCTGGCGAGTTTGATTG 4610 32 100.0 33 ................................ AATGCCGATGATGTTACCAAACGAACCATCAGC 4545 32 100.0 33 ................................ ATTTTGTCGATACTCCTTTAAATTCAGCGTGAT 4480 32 96.9 33 .C.............................. AGTGTGTGCTTGGCGAACCTATCTAACTCATGC 4415 32 100.0 34 ................................ TCTGGTTGCTAACGCGAACGTGAATAAAACGGAA 4349 32 100.0 33 ................................ TTCGTTGATTAACCAGCGCGAGCCTTGGGCCTT 4284 32 100.0 34 ................................ AAAGTCTTTAGCGCGCATCACCACGGGGCGAAAA 4218 32 100.0 34 ................................ TTTTGCGATACCTGCTAAATTGCTTGCGAATTTA 4152 32 100.0 34 ................................ GCGTTAGCAACCAGAGAAAGCACATCGGTGAGCT 4086 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 26 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTGCGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGCTAGTGAAGATGGACAAAAACGTCTCAGGCAATTAGCAAAGGTGTGTTTAGATTATGGTGTAAGGGTGCAATATTCTGTATTTGAATGCGAGATAGATGCGGCGCAATGGCTGCGCTTTAAAAATAAGCTGTTGTCAATTTACGACCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGCAAAAACTGGCAAAACAAAGTAGAGCACCACGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGAGCTAGCGATTGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTTACACCAAATAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTATACGTGCCTTTCACAATAGGCA # Right flank : TTTTAGTTCCATTAGTTAACTCTCTTTACGTACGTCGCGCCTCCCGCTTGATTCCGGACGACCAAGAAGGCCACAGCGACAGCGACGGTGACGGCATTCCTGATTATCTGGATGCCATCTCTGACTGCAACGTGATTCAGCAAACGGTAGCAGAGAACGACAGCTTCCTCATTGAAGGTCAACCTGGCGTTTGTTTACGTAAAGGTGTCACCATAGTGGAAAACCAGACAGGTGGAGCGCGCTTGCTGGATAATGAGCTGACGGTCGACAACGAGGCGGACAACATTGGTGGTATTTTTGACTTTGTGGCGACCAACTTGCCACAACCCGGTCAGAGCTATCAACTGGTTATGCCGCAGCGTTTGCCTGTTCCGGCGAATGCCGTTTATCGTAAGTTCCGAGCCGATGTGGGTTGGGTCGATTTTGTTGAAGATGCTGACAACTCGATTGCGTCTACGTCGGGTGAAGCGGGCTACTGTCCGCCTCCGGGAGACAGTGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 9917-6227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKD01000024.1 Vibrio navarrensis strain VN-0414 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9916 28 100.0 32 ............................ AACAAGAAGTTTGAAGCGACGGAAGGTATCCC 9856 28 100.0 32 ............................ CGGATGAAGGGTGGTCAGTGTATTGTCGATGC 9796 28 100.0 32 ............................ TTTTCGCCAATGGCGCATCGTCATTCTTCTCT 9736 28 100.0 32 ............................ TTCGGGCGATTTTTGATCACGAAAGCGCTGGT 9676 28 100.0 32 ............................ TAACCATTCTGTACACGGCGGTGAAGGCTAAC 9616 28 100.0 32 ............................ GTCACTTGACGCACCGTTGCAGCTTTGTCGTT 9556 28 100.0 32 ............................ GCGGGCGTTCGAGCCGGCGATGGTTTGCTCAT 9496 28 100.0 32 ............................ GCCTGCGGTAGGGCCGCATTAGCAGAACCAGA 9436 28 100.0 32 ............................ TTAATCCTCTTTGCTGCGGTATATCATCATAA 9376 28 100.0 32 ............................ GATTTGACTGCTGAGCAGTTGCTCAGATGACG 9316 28 100.0 32 ............................ GTATTGGGTGAACTGTATGCCGACCGTACCAG 9256 28 100.0 32 ............................ ACGTAGAATTGCCCGCCGAGCATTTTGAAGCC 9196 28 100.0 32 ............................ TTGTTAAAAACGCTTTCTTAACAGTTCGGTAT 9136 28 100.0 33 ............................ AAGGCCGAAGTAATCCCAACAAGCGTTATTCAT 9075 28 100.0 32 ............................ CGATTGAAGCTTGCGCTGGCCGTCCAGTTGGT 9015 28 100.0 32 ............................ CAGAACAACAGTGGCTTGATGCCTTGTTAAAA 8955 28 100.0 32 ............................ AGTCAGTAAGCAATTCGACAAGAGTATAAGGC 8895 28 100.0 32 ............................ ACGTTGTCACGCAGCACACGGACGCGATCAAT 8835 28 100.0 32 ............................ TCGACAACAAATTGAGTATGCTCAGGCATACA 8775 28 100.0 32 ............................ CTGCTCACTGTAGCGGGCCAAACTTTCAGCAA 8715 28 100.0 32 ............................ TCGCTCTCTAGCCTCGCCATCATTGACGGGGT 8655 28 100.0 32 ............................ TGGTTGCCAGGAGACTCCCACGGCTTCACCGC 8595 28 100.0 32 ............................ ATCAAACGACTGAAGCAGGGTTAACGCATGGC 8535 28 100.0 32 ............................ ATTGAGCAAAGAGCACGCTCACAGTGGTTTTG 8475 28 100.0 32 ............................ ATTCCGTGATAAAGCTCGTGCTCTCGGTTTGT 8415 28 100.0 32 ............................ TAGCACTTGGCCGCAGAAAGAAGGGGATTTAG 8355 28 100.0 32 ............................ TGCAAAAAAATGTTGTGCTGTCTCGATATTAT 8295 28 100.0 32 ............................ AAGCGCGCGAAGTGTGACGCGGCATAGTTCTA 8235 28 100.0 32 ............................ TCAACGCAGTATTCTGTCCAGCCTATTGCAGT 8175 28 100.0 32 ............................ AGACGACGACACGGCTTGCGAAGTGGCATTGA 8115 28 100.0 32 ............................ TTTTGCGCGGCCATTGCTGCGACTGATTTATT 8055 28 100.0 32 ............................ CTCACGCTTAACCGCGCTCTTGAATGCCTTTA 7995 28 100.0 32 ............................ CATGACATCGATCAGTTTTCCGAGTTCGTAGC 7935 28 100.0 32 ............................ TTACCAAGAAGCTCTCTTGCTCTTAGCTGCTC 7875 28 100.0 32 ............................ ACCACCATCAAGACTACCCAAACGCTGACAAA 7815 28 100.0 33 ............................ TATCAAAAGGCATGAAACAAGACCGTGAGCGCA 7754 28 100.0 32 ............................ AAGCAAATCGGCCAGCTTAAGCGCCTCTTGCC 7694 28 100.0 32 ............................ AAATGGATCGCGCTTTGGTTCGCGGTCGTAAA 7634 28 100.0 32 ............................ TTCGAGCGCAAATGACATCTCGTTTGCACTCA 7574 28 100.0 32 ............................ TAAAGGTCTAATGATAGCCATTGTTTAAATTT 7514 28 100.0 32 ............................ AGTTAAAACGCCAAAGCAGAATGCCACCCAGA 7454 28 100.0 32 ............................ TAAAGAGCAGAGGGTTAACCGAAGAAACAATA 7394 28 100.0 32 ............................ TATCAATCACAGTTTCAATCATTTCCGTTTCT 7334 28 100.0 32 ............................ AACATCAGAGCGGATATCCCCCGCTTTCACTG 7274 28 100.0 32 ............................ TAGAAGATGTGAAGCGAACTAAAGCAGTTTGG 7214 28 100.0 32 ............................ TGGATTAGAGCGTCTGTATTCATCAACTTCAT 7154 28 100.0 32 ............................ TCCTCCTGATACTGTCAATGCTATGATAGTTT 7094 28 100.0 32 ............................ AAACGAGCCTGGCGCGCAAAAGTATCGTTTCA 7034 28 100.0 32 ............................ AAACGAGCCTGGCGCGCAAAAGTATCGTTTCA 6974 28 100.0 32 ............................ ATCAAGTGAACATGAGCCGCTTTTGCGTCTGG 6914 28 100.0 32 ............................ AATCAACTCAGGAGTGATTTGATTTTGGATAT 6854 28 100.0 32 ............................ AAACCAAGCACCTGAGATTTGAGAGAGGAGAG 6794 28 100.0 32 ............................ TCTTTTAAGTCGTCCTTATCTTGCGTTAACGC 6734 28 100.0 32 ............................ ATCACCAAAAAATTTGAACGCAAGCTAGGCAA 6674 28 100.0 32 ............................ TTGTTTGCTGATAGCGGCTTAATCACCGTGGC 6614 28 100.0 32 ............................ TTTGGAGCATTTGGATTGAGACGCCTAGCCCA 6554 28 100.0 32 ............................ CATCACTACATCAAAAAGGCGCTGCCCGATTA 6494 28 100.0 32 ............................ ATGCAAGAAATGGCGCAAATCTCCGAAGCCGT 6434 28 100.0 32 ............................ AGTACACGCGTTGATGCGGGTCTTGCGCCATC 6374 28 100.0 32 ............................ TCGTTACCGGCGAACCCTGCACAAATACCGTT 6314 28 96.4 32 .............T.............. TATTCTTCGCGCATCCCACGCGCCAGCATAAG 6254 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGTGTAACTTACGTAAGTTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAACGGGATATGCAGCAAAAAGCAGCCCTATGGGCAGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCACCAGACAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTACCGCATTTTTAAAATGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATGGTTGCAACAGGCAGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGCTTTATTCTATT # Right flank : ACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAGCATCAATTCTAATCTAATCATAGCAATCGAGCATTTTAGATGCGCCCGTACCCCAAGCCGTACCCAGAGCGATTTTTGCTACAATTAAAAACCGTTTTAACCTTTATTTAATGCGCTCTAACATCACACCCGCTTCCATGTGATGGGTGTAAGGGAACTGGTCAAACAGAGCGAAACGGGTAATGGTGTGGGTTTCGCTCAAGATTTCGAGGTTCTCGAGCAGGGTCTCTGGGTTGCACGAAATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCTACATCCATACCTGCGCGCGGAGGATCGACAAAAATCGTATTGCAGTTGTAGCTCTTCAAATCTACGCCCGCATCTTTAAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTAAACTCTTCCGCTGACATACGGATGATCTGTACGTTCTCAATTTTGTTGGCGGCAATGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //