Array 1 1928858-1921613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049074.1 Metallosphaera tengchongensis strain Ric-A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1928857 24 100.0 40 ........................ ATGTTTTTTTCTAAGTTAATCCTTTTCCTTCCACTCCGAC 1928793 24 100.0 40 ........................ ATTACAGCAAATTCAGCATATAGAACGTTAGTCGAGTTAG 1928729 24 100.0 43 ........................ AAAGAAGGGAGGAAGGAGGTGGCCAGGGTGTTCTTGGAAGTAT 1928662 24 100.0 42 ........................ CCATACACTCCTGCGGAGTGTAGGAAGTCGAGTACATCCCTT 1928596 24 100.0 37 ........................ ACCCCCTTCTCGGTGTAACTTCTCTTATCTCTCTTAA 1928535 24 100.0 39 ........................ GTTCAGTCTCGTGATTGCAGGCGTGTTGGCGGCGATAAG 1928472 24 100.0 40 ........................ TTATCTTTGCCCTTCCAGTCCTCATATCCGCCGTTCTTCT 1928408 24 100.0 39 ........................ ATGTTTCATTGCATAACGATCGAGCAGCTCCACTAGCTC 1928345 24 100.0 40 ........................ ATTGGAAAGTGAAGAAAGAGCTTCATGATGCGGTGGTAGT 1928281 24 100.0 40 ........................ ATAACTTGCTTTCCCCCCTTCCATCCTTTTCTCGACCCCA 1928217 24 100.0 44 ........................ AGCTCCAAGCAGACGCGTTGATAAAGTATGCTTTTGACCCACGT 1928149 24 100.0 41 ........................ TTTTCTCCTATGTCTGAAGAGCAACGCCAAGAGCTAGAGAA 1928084 24 100.0 39 ........................ TACCAAGTCTTACAGAGACCACTCAAGATATTTAACTGG 1928021 24 100.0 40 ........................ TCTTTTTCTCTAGTAAGTCATCAACCTCAGTTTTTGATCC 1927957 24 100.0 42 ........................ CGAGGAGGATGCTCCAGCGTATATTAAGGAGGTAGGGGTCAT 1927891 24 100.0 39 ........................ ATTTCTATTTATTACATTAATGATAAGAGATAAATAGAA 1927828 24 100.0 42 ........................ CTCACTACGAAGTACGCCAACTATGTGAAGAAGGTGATAGAG 1927762 24 100.0 42 ........................ GACCTACGCTCTGCGCTGGTAGGGTCTTTGTCAGCTCGTTCT 1927696 24 100.0 40 ........................ CAGCAATGATCTCACCCTTTACTTGGCTTCTGAACTTTTC 1927632 24 100.0 38 ........................ TTTTTCAACCACCTAATATTAGCTAGTATTAGCAAGTA 1927570 24 100.0 40 ........................ TCTTCTTAATCTAATCTTTCCCATGGCCTAGCTCCTCCCC 1927506 24 100.0 40 ........................ GTATTCCTAGACCGGGGATTACAGGTATAATGGCAGTCCT 1927442 24 100.0 39 ........................ AGCAGACAATACGTAAGCCTCATGACGCTCACCCCTAAA 1927379 24 100.0 39 ........................ ATAGAGCAAGCATATATAATGAGAATTTACGACAGTAAG 1927316 24 100.0 39 ........................ TTCGCAGGGGTTATCGGTATATGCGCCGAGATGGTATTT 1927253 24 100.0 40 ........................ GACATATCCCCTTAGACGCTTTCCCAGAAGGGCCCATTTG 1927189 24 100.0 42 ........................ TTCTAGGATAATGCAATAATTTAATCTCTGGAAATTCATCTT 1927123 24 100.0 40 ........................ ATAAAGACTCCATAGATACGCTCTTTATTCGTTTTGAGCA 1927059 24 100.0 37 ........................ TGGTAACCGTGGGGCTGTGGGTAACCTTCAATTATGT 1926998 24 100.0 38 ........................ CTTTACGGCGTCGTGTAGTCTCTTGTTGGGTATATTCA 1926936 24 100.0 41 ........................ AAAAAGCAGAAAGAGAGAAAGGGAAAAAAGGGTTATTCTTC 1926871 24 100.0 40 ........................ CTTGGGATTGAAAATGTTGTTCCAACAAAATAGGCACTGC 1926807 24 100.0 40 ........................ ATCATCTCATCGTGACCCCAACCGCAACGAATTGGGGTAT 1926743 24 100.0 40 ........................ TCGTCAACTTAGCTTTAGTTACGTCTAAGAATAACTCAAA 1926679 24 100.0 41 ........................ TTACAGAGGAAAGATTCGGAAGAGTTTGCACACAGCCCTTA 1926614 24 100.0 40 ........................ AACCTTTCTCACGAAACGGCGTTTTGTGGGCCCGGCCAGG 1926550 24 100.0 40 ........................ TGTAGAGACCGGCGACCCCCTGACCGTTGTGGGTGCCTTG 1926486 24 100.0 40 ........................ TTCCTCATACGCGGAAGAAAGAGGGAGGATTAAAAAAGGG 1926422 24 100.0 39 ........................ GTTATCCACGAGGAGCTTGAGCCTGCTTAAGATACTCAA 1926359 24 100.0 39 ........................ ATTAGAGATACGTCTTGTTGGGTAAACGGAGAAGTAGTT 1926296 24 100.0 42 ........................ AAGGAATAGATATGCGTAATTTCTTTCGTAGGCGTCAGACTC 1926230 24 100.0 40 ........................ TAATAGTTGTCGATATTAATCAACGGGTACTTATTACTCG 1926166 24 100.0 42 ........................ GAAAAACCCAGACCCGACTTTCCGAGACCTTTACAACATCGT 1926100 24 100.0 41 ........................ CTCGAGACTCAACAAGAGAGGCCTTATCTACAGACGTTGGC 1926035 24 100.0 43 ........................ CTCTGAAGTCCCCTTTCCCCTCTTCCTCTTCAGGCTCCCTTGA 1925968 24 100.0 42 ........................ AGGAAGCCTGAAGACAAGCTAGTCCCCGTTCAAGCGAACATT 1925902 24 100.0 43 ........................ ATGTCAAGGATACTGATGACGAGACCATTATACGCGTGAAGTC 1925835 24 100.0 40 ........................ TCAAACCTTACCCGTCAAATTTGCCACAGGCGGCCTACTG 1925771 24 100.0 37 ........................ GTATGGTTATGAGTCAGCTGAAGAGTTACAACAAGCG 1925710 24 100.0 40 ........................ GGAGCTAATCAAAATGCTGTTCCTGCATTTCCTCCAGTTA 1925646 24 100.0 39 ........................ GTGCATCTTACCGTAAAGATGTGAAGTGGGTCAACACGA 1925583 24 100.0 39 ........................ GTCTGGCCCACTTTTGGATCCGATCCATTCATTCAGCTC 1925520 24 100.0 41 ........................ TGAGACTTTAACGTTCAACTGTACTAGGGCGACGTTTACAC 1925455 24 100.0 39 ........................ ATACATCTGCCTCAACAGGACTTGTAGAATATATCGTAC 1925392 24 100.0 40 ........................ TTAATTCCTCAATCTTAGAACCAAGCGAACTCTCATTCAT 1925328 24 100.0 35 ........................ AGATAGACGACAACGGCAACGTTACTTTTTATGAG 1925269 24 100.0 45 ........................ TAATTTTTGCTTCGTGATTCTCCATGTACACGTTGACCTTACTGA 1925200 24 100.0 44 ........................ CCACCACCACCAAAGTCAACTAGGGCGCAGTTGCTGCAGGAAGC 1925132 24 100.0 40 ........................ TTTAGCGCATTTATGATATGTGCGTTTGAAACGTTGGAAG 1925068 24 100.0 38 ........................ AGTGTTATTCGTGAGTAACTCCCTGGACAGCCCAAAGA 1925006 24 100.0 41 ........................ TCAGCAGCACGGAGTTGACGAGCACTAGCAAGCCGGACGTA 1924941 24 100.0 39 ........................ ACTATGAACACAACCGTATCAGCGTACGAACGTAATGCT 1924878 24 100.0 39 ........................ CCTGCGACTTGATACACCAAAGCAAAAATCATTACTAGA 1924815 24 100.0 42 ........................ GTATCCATCGATTGTCCTAGAAGTTCGTAATCCTCGTATTTC 1924749 24 100.0 38 ........................ TAGTGGATCCCGAAAGGTGAGTAAGAGAGAGTGTTATA 1924687 24 100.0 40 ........................ GACGACAACCCGAGAACATACCCCCCCGCGTGACCCGCAA 1924623 24 100.0 42 ........................ TGGTTATTACGTTGTTCCTAGCGACCACGCCCACTACATCTG 1924557 24 100.0 40 ........................ TCTCGTTAGCTTGTTGACTGACGTTAAGGCAATTACAGGT 1924493 24 100.0 39 ........................ GTGATATCAGCTAGCTCGTTATTCAGCACGTCGCAATTA 1924430 24 100.0 41 ........................ TGTTAATGTTATTCTGCGATCCAGCCACGCCTCTGGGTGGT 1924365 24 100.0 39 ........................ CTCGAAGATCTGATGATATAGTCTATCTCTTCATCTGAG 1924302 24 100.0 41 ........................ TTCGTTACTCCATTCATAGAACCTAAGAGAACTGAACCATT 1924237 24 100.0 40 ........................ AAATAAAGAACGTGAGATGCCAAATATTCATAGATGATGA 1924173 24 100.0 38 ........................ CAATAGCTCTGCTATCTTATGAGCTCAGCTCAGGTTCA 1924111 24 100.0 40 ........................ ATTTATCGCTCCGAAGTAGTTTATCTGAATCGGGTTTCCC 1924047 24 100.0 42 ........................ TCCCTTTACCTTCGATGCAAGTATCTCAGGCTTGTCAACCAT 1923981 24 100.0 39 ........................ AAAAACGCTACATGCCCGGTATCAGCGTCCTATTCGATA 1923918 24 100.0 42 ........................ GATTAACAAACTCAAGAGTATCATAGTGATAAACATATTCAA 1923852 24 100.0 40 ........................ ATACGTACGCTTGTCAAAGTCAAACACCCCGTCACCGTAC 1923788 24 100.0 39 ........................ ATTATCATTAATGAACTTTAGCACTTCTTCCCTATAACT 1923725 24 100.0 41 ........................ ATCAGGTCAGGCGTGTAGCCCTCAATTGCGAGGGCTTGCGC 1923660 24 100.0 42 ........................ ATTAATAGGAATGCGTCTATGATTGGCCACAGCCATGAGAAG 1923594 24 100.0 39 ........................ CGTAAAAAAGGAGGGGAGGGGGTATAGGATCCTTGAGGG 1923531 24 100.0 43 ........................ CTTGTGCGGCGTCGGTTGTGCTCCCTTTCACCATTTTTCTCAC 1923464 24 100.0 38 ........................ TTTTGACGCCCTCGCTCAACGGGCCATTTCGCATCTCA 1923402 24 100.0 38 ........................ TTTCGACCCTGGCCCGCGGCACTGTCTCATTACTTATG 1923340 24 100.0 39 ........................ TGTTCTCACCTATAAGCTAATTAATCCCTTTTTCCAGAG 1923277 24 100.0 38 ........................ TCGCAAACGGGGTCACGTATGAAGTGCCGGTTTCGCAT 1923215 24 100.0 40 ........................ ACCACGAACGCGGGCTTGTTCCCCCCGGGCAGGGGGTTTT 1923151 24 100.0 39 ........................ CAACATCCAGTTCTAAATACTGTTCAACACTATACTCAA 1923088 24 100.0 40 ........................ ATCCCTTTCCTTTTGAGGTTCATACCTCACCTTTATCAGT 1923024 24 100.0 41 ........................ CAAAATCCCCAACAATAGTCATCCCTACCAACCTTCCATTA 1922959 24 100.0 38 ........................ TATCAACTTAATGACCTCCCATACAAGGACGAAATTAA 1922897 24 100.0 39 ........................ ACAACTACAGGGAGTACAACAACCACAGAACGGGATGAG 1922834 24 100.0 37 ........................ ACCCCCTCACATTTTCGCTTTCAATTCCGCCAGCCAC 1922773 24 100.0 38 ........................ ATAAATATGTATGGCCTCGTTGAATACGTAGAAGATAA 1922711 24 100.0 41 ........................ GCGAGTACAAACAGAGAGTGAAGATATTCTCGATAAAGGTA 1922646 24 100.0 38 ........................ GTACCCCTTCCTTCACAAACCTTTTATCTCCATCTGTC 1922584 24 100.0 38 ........................ GTGTTATAAGACTCATTAAAGCAGTTTGACCTAGTCTT 1922522 24 100.0 39 ........................ ATTTAACTCCATTAACCTAGGAGCCTGTTGAACCTCTTC 1922459 24 100.0 39 ........................ AGATAAGATCCTGGTGAAGAGTGCTAGGTTGGAAGCGGA 1922396 24 100.0 37 ........................ GTAGCCTGCTTGAGTTGAATAGTTGTAAACTAGAATT 1922335 24 100.0 40 ........................ ACCACTATCAGCGTACTGTTGCAACTTCAATAGTAATGTG 1922271 24 100.0 40 ........................ CTAAGAAGGTTCTGTACCTGACTCTGTAGCTGTTGAGCCT 1922207 24 100.0 41 ........................ TATTACCTCAAGCTTTACGGTGACCTTAACGTCACCGACCT 1922142 24 100.0 41 ........................ CTATACAGCACCACTTCCGTTTTTGTATCGCCAGAATATAT 1922077 24 100.0 41 ........................ CTGTAAGCTGCACTTGTATCCTCGTTGTCACGTAGCCCGTC 1922012 24 100.0 40 ........................ TTGGCACAAAGGGCGAATTAGGTAGCAGCTTTCCATACGG 1921948 24 91.7 37 .................CC..... CGTTCTGTTCAGTGAGCGGAAGTGAGAAAAAGTCAGA 1921887 24 91.7 40 .............G....G..... ACGGTATTTCCACCTCCAATTTCTCCACCGCCGAGTGCAA 1921823 24 95.8 36 .................A...... TTCATATGAGGGTTTCCCCTTAGGATTTTGTGAAGA 1921763 24 95.8 40 .................A...... CTTTTGCTACCTCTTTTTCTTTAAGAATGAAATTGACAAG 1921699 24 91.7 39 ............C..........T CTTTCGAAACTGCATAGAAAGGCCTCCCCACGGAGGTCA 1921636 24 95.8 0 ..................G..... | ========== ====== ====== ====== ======================== ============================================= ================== 114 24 99.7 40 GTTGATCTTCCATAGAGTTGAAAG # Left flank : CGTCCCTACAATCTCAGTGGGAGAAGGGCGACGTTAAGGTAGAGGGGGTCCACGTGAGCGACAGAGACTATTCTATATGTAGGAAAGACGTAAGTTTCCCGGTTTTTGTCGGGAAGAGTTGGGACCCTAGGGGATGGAGGCGGGGATCAAGGGTGAGATGAGGTAAGGTTAACACGTGAGATTGAAAGCTCGCGGGTATATCTTTCATGGAAAGGGACGGGCAAATCGCCTTCTACCGCTTAATCAAGGACCTGTTCAGGGAAAGGTCGACCAGGCATTTTTCCGTGCTCCTCGTCATAACTGCTGGATAAAGGGCTAACTCGTCTCTACTTACCTTCAAGTAACAGATACGTTCTAAAAACATTCTTCAATGAGATCAGCCACTGCTTACGGAAATGATAAGACTGATAGGTATTCCAGTAAAAATTCGTCAGTGAGTTGAGGAAAAAGCTTATTATTAGGGAGTAAATTGAAGTAAATTAAGGATATATAAATGTTCA # Right flank : AAGGACTAGAGACGTCTCAGAGGGCTCACTCAGAAATAGTAAGTGGGTCGCCGATCCGACTATTTCTTTTAACGTCTCATCATCGTTCTTGAGCGCTTAAAAACCTCATAATGGGGGCCTTGACTTCGGAGATACACTTTCAATGCAGTGCACATGCGTCGGGAGTACCTAGACTTACAGGCAGAGGTGCAGGAGAAAGCTTTGAATGCAGTACACATGCGTCCGGTTGGCAGGGAAGCAGGCAAAACGCCGAGAGCCGTGTACCTGGGCCTAGACGCCCCTCTAAACATCTTAAGCATGAGAGAGATTGAGAGTTCACTTGTAGGCACTTCCGTTACCTACGCGTCACGAGAGCGACCCTAAGGTCGTGCGGTCATGGACCTGTTGGTAGTTATCTGCCCCCGGCCACCCCTTACATGAGGGGCGTAAGCCCGGACCAGTGAGGGCTTCACATGAAGGACAAGGCCCGTCCAGCAGCCCCTATCCCCTGACCCATGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCTTCCATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1939776-1950028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049074.1 Metallosphaera tengchongensis strain Ric-A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================================================== ================== 1939776 24 100.0 38 ........................ ATATATTTCTCCATCCTTAGTCTTCACTACATCATAGA 1939838 24 100.0 41 ........................ AGTCCCGTAGGCAACGCAGTTGAGCTGTTCAGCGAGCGTCT 1939903 24 100.0 40 ........................ AAGATTGAGTATATTTTTAGTAATGAAGAGGGAAAGAAAG 1939967 24 100.0 40 ........................ GTAGTATTAGAGTTTTATGGTAACATGTATGATTCTGTAT 1940031 24 100.0 44 ........................ AACTTCATTAAAGCTAAAACAGCAGAGGATGAGCAGTTATGCTT 1940099 24 100.0 39 ........................ GCATCAACATAAGGCAGGCGGGTGAGAGGGACCAGTTTA 1940162 24 100.0 38 ........................ AATTGCACGGTTGGACTTATACGTCTGTTAGAATCTAA 1940224 24 100.0 40 ........................ CGGGTCCCGCGCGCTTTCGAGTGTGTGTCTTCTTCTGTTT 1940288 24 100.0 42 ........................ TACCGGGCTGTCTGCAAGCTAGACTAGTAATTCAGTATACGA 1940354 24 100.0 39 ........................ TTGGACAGAGCATCGTTACAGGTATAAACACAATTTACA 1940417 24 100.0 40 ........................ TCCTTATTAGGACATCGTACTTATTTGCGAGAGGCAGGTA 1940481 24 100.0 39 ........................ ATGCGACGTGGACGCTTGTTTTCAGGCTCTATGAGCCCA 1940544 24 100.0 39 ........................ CAAGATAAGGGACATCGCTAAGTCGAGGTTGTTCGACCT 1940607 24 100.0 40 ........................ ATCGGCAACTGATAGGCTAGCCACACATGAACTAACGACT 1940671 24 100.0 39 ........................ ACCAACGCACTCTTGTTCTCTCTTAACGTCATTATACTT 1940734 24 100.0 41 ........................ CCCCTTCTACGATCAATTCAACATTTCCCCCTCGGGGAAAC 1940799 24 100.0 39 ........................ ATACTTACTAGGGACGACGTAGTACTCACTTACCCCATC 1940862 24 100.0 39 ........................ CATCATAAACTCGATCTTGTCCTTAAACTCCACCAACAA 1940925 24 100.0 41 ........................ TTCGTTGTGGGTCGTGATGAACAGCTTCTTTTTCGCTTTGG 1940990 24 100.0 39 ........................ GTGGAGAATCCCCACTTGAGTAGAGCCTCTCTCACATGA 1941053 24 100.0 40 ........................ TTAAGGGAAGGGGATATTTCCCTCCTTCCTACAGGATGTT 1941117 24 100.0 42 ........................ TTCTACACTTTTGTAGAACGTTTAGAAAACTATTTCTTTCGT 1941183 24 100.0 39 ........................ ATACGTTCAGCTATCTCAGTCAGGGTCATCTGTTCATTT 1941246 24 100.0 40 ........................ CTAGGCCGTTGCCCATGGGGTCGTTGTAGCGATAGTGCGC 1941310 24 100.0 43 ........................ ACCCCGCATACTCCAGCGATTAGAAGGGAGGTCTTTCCTAAGT 1941377 24 100.0 43 ........................ TTTTCTTCTCTAGCAGATCATCAACCTCAGTTTTGCTACCTTC 1941444 24 100.0 38 ........................ TAAAGTGAAGTGAAACATGGCTTTGCAATACTATTACA 1941506 24 100.0 40 ........................ ATTGACGCACCCCTCACGATTAACCCTGTCGCGTTACCTA 1941570 24 100.0 40 ........................ TATGTTCCAAGTCATGCTTATTTGGGTCATGAAAAGAGTG 1941634 24 100.0 41 ........................ CTATTCCCTGGATATGTTGTAGATGATAAATTGATTCCCCA 1941699 24 100.0 40 ........................ AGACCCAGGTCTTGTAACCAAGGTGGTGGAAACGGGGGAC 1941763 24 100.0 40 ........................ ACCTCCTCCTCGATCTGGTCTAATAGCTTCTTGATCTCTT 1941827 24 100.0 42 ........................ CTCCCTCCTCATGAGCGACCTGAGGTCACTCCAGAGTTCTGG 1941893 24 100.0 35 ........................ TGAGGTAATAGTACTCACTACCTTCTACAGGCGAA 1941952 24 100.0 39 ........................ AGCAAGAAGAGAAAGCCCTGCCCGATACTCAACTTAGGT 1942015 24 100.0 41 ........................ TTTTCCTCATCACCATTCACCTCCTGAGGTCTTGAATAATT 1942080 24 100.0 41 ........................ CTCTTCATTGATCTTCACGAAACCCATAGCTTCCAGGTCGA 1942145 24 100.0 40 ........................ CTGCAGCGCTTGTTCCCTCTTGATAGCCAACTCTGCGATA 1942209 24 100.0 40 ........................ TGAATATAGTAAGGTGTTGGGGCAGACAGGGAAGTATATC 1942273 24 100.0 41 ........................ TTCCCTCACTGTTGTACTCAATTGTCACCAAATCGAATAAT 1942338 24 100.0 40 ........................ TCATGGTTAAGTTGATGATAAATTTATTAGTGCGATTTAG 1942402 24 100.0 41 ........................ GAACTCCATGTACCTCACGTAAAAGTAGTCAGCCATAAGCC 1942467 24 100.0 40 ........................ TCTTAAAAGTTACTCTATCAGGAATACAAAAAATATCTGT 1942531 24 100.0 41 ........................ CCTCTAATTGTCCAAATTCCAAGATTCTCACCATCTAGTTG 1942596 24 100.0 40 ........................ TTTCATACGGTATCCTTAAAAACTTTGCTAATTGCAACTT 1942660 24 100.0 41 ........................ ACTCAAAAAGTTGTACAGGATTAAGTATAAACTTTGACCAA 1942725 24 100.0 46 ........................ CTGTCGTTGAAACTACGTTTGTTAAATTACCTCCGACCTCGTTTCC 1942795 24 100.0 41 ........................ TTCAAGAAAGCTCGTGGTGGTGGTGGAGGAGGGGCAACAGT 1942860 24 100.0 41 ........................ CTTTCTCTACGCCGAGATAGCCGTCCTGCTGTAATTTTGCG 1942925 24 100.0 41 ........................ GTCTTATCCAGGACTGAGTATAACGAGAGAGAAAAAATCAC 1942990 24 100.0 43 ........................ GAGTCGCTGAAGCCGAGAAAGACCCCATCCTCATCCAGTAAGT 1943057 24 100.0 40 ........................ ATTGCTTTACAATCAAGAAGTTTTTGCATAAATAGAAGAA 1943121 24 100.0 41 ........................ TACTATTCACCTGACATTGCACAGTTCTCAGCACTTTTCTA 1943186 24 100.0 41 ........................ ATTTTACTTTTCGGATCCTTCAACATTATTCTCACCACATC 1943251 24 100.0 43 ........................ CCTAGCTGTCCTTCCCCTCCACTCGTGCCGTTTTGTTCACCAC 1943318 24 100.0 39 ........................ CCACCACCGCCGCAACCCGTTCCTCCGTTTTGACCATTT 1943381 24 100.0 43 ........................ GACAGATAATATGGCACAAGCACAAGAAAATTGCGTTTTTAAC 1943448 24 100.0 40 ........................ ATAGAGCGTTGTGGATCCTCCATCATCGGCAACACGGCTT 1943512 24 100.0 42 ........................ GATACAACTGCGAATAACGTTACAGGTATAGTACTTGATCCA 1943578 24 100.0 40 ........................ TTCTAGTAATCCGTTTCCTAGTCCGCTCATGTATTTCTTA 1943642 24 100.0 39 ........................ AGCAACTCATCGTACTTGAAAAGCAAAAATTCCCCGTTG 1943705 24 100.0 40 ........................ ACCCGTTTGCTCGAAGATATAGCTACTCAATAAATCCCGA 1943769 24 100.0 39 ........................ GAGAAGAGACTCTTATTACTGTTGATCGCCCGGGATCCT 1943832 24 100.0 40 ........................ TTCCGCTATGCATACTGTATAATCTTCGCTACAAATCAAA 1943896 24 100.0 41 ........................ ATGAAATCGGCGCCATTCAAATTCCCAATAAGTTTTGGCAT 1943961 24 100.0 40 ........................ CTGACTAGTGGTCAACCTACTGCTACAACCCTAACATCAT 1944025 24 100.0 37 ........................ ATATAAGATCCATGTTTATTATAAGGTAATATATAAA 1944086 24 100.0 39 ........................ TTTCTCTTCGTCAGAAAGCTTCGATAAGATGTAGCGTAG 1944149 24 100.0 40 ........................ TAAAAGCCCTCGCCGAGGTGGTGAGGGAGGCATATGAGGA 1944213 24 100.0 38 ........................ ACCTATCTACATTAGTACAATACGCTACGTACTTGGGA 1944275 24 100.0 39 ........................ TTATATTGCAAAATGATAAATGATTCTATGATACTTACG 1944338 24 100.0 39 ........................ GATTGTTCAGGTACCCTGCAACCAGCATTGCTATCTGGG 1944401 24 100.0 40 ........................ GCAGATATCTCGATGACGCCGTAGCTGTCCCTCTTTATCA 1944465 24 100.0 36 ........................ TCACTATCTTCCTGAGAAAAGCGCTTTGCTGCACGT 1944525 24 100.0 39 ........................ TTACCTTATTTTCGACCGCCTCCCTCTGCTCCTCCTCAG 1944588 24 100.0 41 ........................ TTCAATAAGCTCGATTATATAAGAGCAAAGTTTAATCTTCC 1944653 24 100.0 44 ........................ TAATTAAATGTAATTTTCGTTTTATCTTTTCTCTAGTCATTAAA 1944721 24 100.0 39 ........................ TTCCCTTGGTCTCAGATTGCATATGTAGGGATAAGAGGT 1944784 24 100.0 41 ........................ AGCAATGACCGAAATAGACTTCAAGGCTAAGTACTGGTCCC 1944849 24 100.0 43 ........................ CTTTTTTGTGTACACCAATCAAAGAATTCAGCAATTTTGCCCT 1944916 24 100.0 39 ........................ CTCGTCTTTTAGATATCTGAACACGTCTTCAGTCGACCA 1944979 24 100.0 40 ........................ AGTCCTGCTCCAAACATTATGCTGGTACCTCCTGCTCCTC 1945043 24 100.0 40 ........................ AAACTGAGGATAAAGGCGCCCGCGATCGTCCCTAGCAGCA 1945107 24 100.0 40 ........................ CTACCTCCTTCAAACATTGCTCAAACCGCGCATTAGTATC 1945171 24 100.0 42 ........................ AGCTGGCAGGGAAGATGGTAAATCTAACATCGATAGATCTCA 1945237 24 100.0 40 ........................ ACCCCTCATCAAGAGGTCGAGGCTCACCTCTAAAGAGAAG 1945301 24 100.0 38 ........................ CTGACGGATTTCTTCTACGTGACAAGAGAGAAAAAGAA 1945363 24 100.0 41 ........................ ACAGATAAAACCCAAAAATATTACAGAGAACTAGGCACCTA 1945428 24 100.0 41 ........................ ACCCCCGTCGCCTTAACTGCTACAGCTGGGATCTGCCCAGC 1945493 24 100.0 42 ........................ GACTTCCTCGTCGTCCTTTAACACGTAAGTCCTCTTTATTCC 1945559 24 100.0 38 ........................ ATTTCAGCAGGAACACAAATTCTAGTTCAAAATGTTAA 1945621 24 100.0 40 ........................ CTTGATTAGTCCATTTATTTGTATTCAGAGAGGTTCCAGC 1945685 24 100.0 38 ........................ CAGGCATCTGGATCTACTACGAGGTCTCAATGTACAAG 1945747 24 100.0 41 ........................ CATTGAGTTAAGTAAATGTGTCCAGTCTGCCATACCATTGT 1945812 24 100.0 40 ........................ CCTCGACAGCTTCTGGGTCTTCTTCCTCCTCGTCCCACTC 1945876 24 100.0 40 ........................ GGTGAAGGAACAGAGAAGAAGAAGAGGGCAGAGATGCCAC 1945940 24 100.0 38 ........................ GTTATAGTTCATATAATAATGTATCACAACCAAACCAA 1946002 24 100.0 40 ........................ CTGTCTCAGGAACTTCTGTATTTAACAAAAATCTATCACT 1946066 24 100.0 39 ........................ TCTTTTTACCTGCCTTATCTTTCTGAATCTGAAGAGTTT 1946129 24 100.0 41 ........................ ATATAGTAAGTGCATATTTAACAAAGTCTGGTAACGAATTG 1946194 24 100.0 39 ........................ AAAGGTGAAGGACAAGATGGTAGAGCGATGAGACCGAAG 1946257 24 100.0 41 ........................ CTACCGCCACCTGCGGAAATAGTCGTTGAACCTATTGTAAT 1946322 24 100.0 39 ........................ CTTATCAATGCTTGTTTTGCTTTCTGATCGCCTAGAAGC 1946385 24 100.0 40 ........................ CCTCGAAAAGTCCTGTCAGCTCTTTCCATCGACAAGGATC 1946449 24 100.0 40 ........................ TTTGACCTTCGGCTGGAGCATTATAACGGGCATCATCTAA 1946513 24 100.0 38 ........................ AAGCCCGTGAGGGAGTAACTACGGACACCCAAGCTCCA 1946575 24 100.0 42 ........................ CTATTATAAGGAGGCGAATGCAGATGGACGCTGATGAAATCC 1946641 24 100.0 40 ........................ TGGTTACCAATTTGAGGCAATATGCAACGGACGGTAACGT 1946705 24 100.0 39 ........................ AACGCCTCAGGCTCTCTTTCCAACGTCCACAAGAATACC 1946768 24 100.0 40 ........................ AGCGTCTGATGCGCAAGTGATGGAGCGCACTAGAGAGGAT 1946832 24 100.0 43 ........................ TTGAAACCATACCATGTATTTGTATTACCTGTATATGCAATTC 1946899 24 100.0 44 ........................ AACATGACACAGATCGTGGAGGCCAGTGGGGGCATGAGCACCAC 1946967 24 100.0 38 ........................ ATTGCCTGGCTCGTTGACATGCCCAACGCGACCCAGGT 1947029 24 100.0 39 ........................ TTATCTTGGCTAAAAGACTTAAAAGGATGAGAAAGAGAT 1947092 24 100.0 40 ........................ AGCCTCTGTTGGGGGAATCCTGAGTTCATTGATCTGTTGG 1947156 24 100.0 38 ........................ AGTAGCCCCCACTCCATGGCCCAACTTCTGCCCCCTCG 1947218 24 100.0 38 ........................ CATCCCAATACATCTCTTTCACCACGGAAAGATTTTTA 1947280 24 100.0 42 ........................ TTCTGCCAGTTCACCCACTCATAGAAATTATACGTCCCATTT 1947346 24 100.0 40 ........................ TTTAGGGTGATGTTCTTCAAGTCTCTCTGTCAAGAGACCA 1947410 24 100.0 39 ........................ CTTGGGTTTCGCTAACGTCATGGAAATATTCGACAAGTT 1947473 24 100.0 41 ........................ GTCTATTAAAACTGGTATTATAATAATCTTCTGCATGAAAA 1947538 24 100.0 36 ........................ TTCAAGAACAAGTTTAACGTGAAGGCTATCATAACT 1947598 24 100.0 38 ........................ TTCGCGGTTTGTGTTATGTTACCAATCGTTACTGAACT 1947660 24 100.0 41 ........................ CAAGTTTCAACTTTTACCAACTCCTCTCTCAAATGTCCTAA 1947725 24 100.0 40 ........................ ATTTCTCATATCACTTTACCTTCCTAGTCCTGTTCCTAGT 1947789 24 100.0 41 ........................ TCCTCGTTTTCTACGATGCCCTTCAGCCTGTACAAGCCCTT 1947854 24 100.0 42 ........................ CGGTATGTCCACGTCCTTGTTAAACGGATCCTTGGTGATGTA 1947920 24 100.0 40 ........................ AACTCCACCTCATCTATTAACCCTGACTTATTCAAACTCT 1947984 24 100.0 39 ........................ TTTCCTTTTAATTCTTGTCTGTCTTATAGAGTTGAAGTA 1948047 24 100.0 39 ........................ TCCACGAATGTGATACCGTAAGTAATGCGGATGTCCTCT 1948110 24 100.0 40 ........................ CCTGCTGCTGTCCCACCAGCTGCAGTTTCCTCAACCACGA 1948174 24 100.0 42 ........................ GATACAACAGCGAATAACGTAATAGATGCACTATTTGATCCA 1948240 24 100.0 37 ........................ TTTTTTATTTTATCAAAACCAATGTCATAAAAATCCT 1948301 24 100.0 38 ........................ CCAGCTCCTCCATTTGCTGTCTCTGTAATGTTTCCGAT 1948363 24 100.0 43 ........................ TTAGCGTCTAAAGGACTAGTGATAATTACGTTATTCACCGGGA 1948430 24 100.0 39 ........................ ATATAAGCTCCAATCAATATCAGCAACAGTCCGACCCAC 1948493 24 100.0 39 ........................ ACAAACCCCTGAGGTGGGGGTAAACACCTTACACGAGTG 1948556 24 100.0 38 ........................ TTTTTCATTACAATTATTGTCCATCCAGTCTTCCTTAG 1948618 24 100.0 39 ........................ GCCCGAATAGACTGGAGGATAGGGTGGTCTTCTATAATC 1948681 24 100.0 39 ........................ CGAATGTATGTAGTGTACTACGTATTTGTCATGAAGTAG 1948744 24 100.0 39 ........................ GTCTCTTTAATCTTCTCTCTACATTCTTAAGAAAGTCAT 1948807 24 100.0 43 ........................ GCTTTCTGATTCTTCTCTCCATGCTTTTCAGAAAGTCATCCAG 1948874 24 100.0 41 ........................ CTTGATATATCTGAAACTACTGTAGAAAATACTGCTTCTAA 1948939 24 100.0 43 ........................ TTTACTTGAAAGATAGACCACAACCTTAGGTAGATATTAACCC 1949006 24 100.0 41 ........................ CTTCCTCCACTCCCGACTGTGATTGATGCCGATGAACCTCC 1949071 24 100.0 33 ........................ TTTAATGGCAGGTGCCCTGCATGTTAACATCAC 1949128 24 100.0 40 ........................ AGATGGGATGGAATATGTTTGCGATCGTACTACTTGCTTT 1949192 24 100.0 38 ........................ CTTTCAAGAGGAGTATGATACAACGCGGTATGAGCCCA 1949254 24 100.0 41 ........................ CTTCCTCCACTCCCGACTGTGATTGATGCCGATGAACCTCC 1949319 24 100.0 40 ........................ TTTAATGGCAGGTGCCCAGAGAGCCCATTCTCCATTTTCT 1949383 24 100.0 39 ........................ GGACTGGAAGAGGGTATTGTGCCTGCCAATGAAGATCCA 1949446 24 100.0 43 ........................ TCTGGTATCGCATTTATTTGAATGACCAGTCTATTTAGTCCTT 1949513 24 100.0 39 ........................ CACAAGCTGATCTACACTGTACGTAACACCCTCTACAAG 1949576 24 100.0 39 ........................ ATTTTATCTGCAGGCACACTATGCAACAGCCATACAGCA 1949639 24 100.0 40 ........................ CATTAATGGTTCTGAGAGCTCTCTAAACTTGTTAGTGGTG 1949703 24 100.0 43 ........................ CTTCTCCGTAAACTTGAAAATAACATACTGAGGAGGCTTTTTC 1949770 24 100.0 41 ........................ ACATTGAACGTTTGTATAGTTATACTGCTACCAGAGCTACT 1949835 24 100.0 43 ........................ TTATACAAATTACCTAATAGGAAACTCTACTATTCTAATGAGC 1949902 24 100.0 79 ........................ AAACATCACTTTGTAGGGTTTATCAGAGGAAGTCAACGTAGTTGATCTGTTTGAGGAGAGGTTTAAAAAAGAACAGGAG 1950005 24 95.8 0 .......................A | ========== ====== ====== ====== ======================== =============================================================================== ================== 160 24 100.0 40 GTTGATCTTCCATAGAGTTGAAAG # Left flank : AGAAAGAGATACGTTAATCACGGATTCCTCAAGGTAGTTAGTAAGGTGTCGTAGTCTAGAGAAGAGACAGAGATACGTTACTCAAGGACTAAGGAGATGTTCGCGTGTCTGAAGAAGACCTCTGACTCCAGCACGAGTCCTGCAGATTCCTTAGAAGTTCAGTCGGATCCCGTGACGTGAAGACCTCTGACTCCAGCACGAGAGACGTTAATTAGGGACTGAGAACCTAGCTAGCTCCCCCTCATAGTGTTTCAGTGGGAGCACGTTAATCACGGACTGTGCCAAGAAGGCCCAGGGCAGGACCTTGACAAATGGGGGCAACACAGACCTCCTTTTCCTTGGGGACCAGGAAGCCGAGAAAATAGGAGCGGGACGTAGTTGAGCTAGGTAAGTATGTCTCTGTAGTTTGTTCGCTTGACGTCTATTGGCAAGATATGAAATAAGGAAAAATTTATTATGGATAAAGTGTATAAGATAATCAGGAGGTATATAAACATTCA # Right flank : AACGACTAGTACTGGTGGGAATACCGGTGAACGAAACGCAGGTTGATCCTCCAGTCACTGCTTAGGTACTTGGCAATGAAGGTTGGAAACAAAGTTGTCACACTCAGGTCCAACCTCCTTCTGCCCTGTCGATCATCTTCCACTCCTTCCTACTTTTAACTGTAGTCCCCATGACAGTACTCCTCACCACCCTGTAGTGCTCTTCATATTGGATGAACGTGACCGGGATTACCCTCCTCCTTGCCTCGAGTTCAAGGGAAAGGACGGTCACAGTGCAGGAGCAAACGCGGAAATGAGGCCCATCCGGGACAATGTGGGGCCCATAGTGGCTGGGTCACTCATAAGCCCGTACGGGCAGCCCGTAATGGAGTTCACACTCGGAAATACGCCAGTGTCCGTCTTCATACATCCAGGTTTGCTTTGAGTTCTCCTTCTTGATATCTCCCGCGGTCATAGTGGGTGTGGTCCCCTAAGCCACTAGGGTCAGGGAGAAGAGGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCTTCCATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 1980571-1976209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049074.1 Metallosphaera tengchongensis strain Ric-A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1980570 25 100.0 40 ......................... TTCGCTTTCTTGTTCTTTCTTGCTTTCATTCACTCACTTT 1980505 25 100.0 40 ......................... TAGTATAGAAATCCTTGTTCTTCACATTCATTGCGGTCAT 1980440 25 100.0 38 ......................... TAGAATCAACCACACTGGACATAGACGTCGACCTTCTG 1980377 25 100.0 40 ......................... TCAACTGGGTATTATACAAATACTTCAGGCAATATTTACA 1980312 25 100.0 40 ......................... TAATCCCATCCCTTTTTCTTCCGGATTATCATAGCACCAC 1980247 25 100.0 35 ......................... CACTCTATCTTCCAGCTTCCCTAGATCTTCTTTAG 1980187 25 100.0 39 ......................... TTTTTGATGGTGTTTTTGTTCATTTCAACTAACTTCCTC 1980123 25 100.0 39 ......................... TTTTATGGTGCGGATACGCTTTCCTAGTGAGTTTATATG 1980059 25 100.0 39 ......................... ATAAATCTAAGATCCCAAACCTTTACCCGGTTATCAAAC 1979995 25 100.0 36 ......................... TGATAATCATCTGATCAATATCTAATTCCCAAACAG 1979934 25 100.0 38 ......................... AATTGGACTAGTCCTTATTAACTGCGTAGTGCTCCATG 1979871 25 100.0 36 ......................... TCAACTACTAGAGTTATACCCCTCGGTTTAGGGTTT 1979810 25 100.0 40 ......................... AAAACATCTAATAATGCATCTACGTATGTGGATTGTCCTG 1979745 25 100.0 39 ......................... TATTTTACTTGTCCAAAATTCGCCCTATATTCCACTCTT 1979681 25 100.0 36 ......................... AGGGGAATCGTTCAGTCTCTATACGAGATCAACTAA 1979620 25 100.0 40 ......................... TTTTTCTATGAGCTAATCAATAGGAAAGTGAATCTCTTCA 1979555 25 100.0 41 ......................... TGTACGTACTTGAAATGTCTTGCGTCCTCCAATTTCCTGTG 1979489 25 100.0 40 ......................... ACTAATACCCCTTCCTTCATGAACTTTTTATCTTTCTCAG 1979424 25 100.0 42 ......................... TTATTGTATATGAACCAACATTACATACTACTTTTTCGTTTT 1979357 25 100.0 39 ......................... AAAAATGCTTTAGCAATTAAACTGAAGTCATATCTAAAA 1979293 25 100.0 38 ......................... CACTAAAATCTATATGGATAAGTCTCTCACCCATATAG 1979230 25 100.0 41 ......................... TAATTATAATGGCAAAGTCTCTCTTAATGGCAGAGTCAGTA 1979164 25 100.0 38 ......................... TTCGTAGGTCTTAGAAAATAGATGGTCTGGGACTCCAC 1979101 25 100.0 38 ......................... GGCTTTAAATAATAATACTATATAGGTAATTAGATATA 1979038 25 100.0 36 ......................... AATTATGATCAACAACAGCTAACTGGTACATGTCCA 1978977 25 100.0 40 ......................... TAAATCAAGTTCAAATTTCTGTTCGCCCTCACCGTTCAGG 1978912 25 100.0 38 ......................... TTATGATAGTTTGTAGCGTCTTCTTTAGTGAACAATAG 1978849 25 100.0 39 ......................... ATTATTGCGTCTCCGTCTGTCAGTGGCACCATGACCTAC 1978785 25 100.0 39 ......................... ATATAATACCCATCAAGAACAGGTAGAAAAACATGCACA 1978721 25 100.0 39 ......................... TTAAATACCTCCTTCCCTTCTCGGATACCATGCATAAAT 1978657 25 100.0 36 ......................... TCATCTATGAAGATGGGGCAGGGTTTTATCATGCTA 1978596 25 100.0 40 ......................... ATTACTAATTCTTTCTGTACAACATACTCTTTTTTACACT 1978531 25 100.0 38 ......................... ACAAAAGCACTTCAACTTACACATTGTCAGACTACCAG 1978468 25 100.0 39 ......................... GTATAATCTACTAGCTCTCCCTTGCTTATCATTGCGTAA 1978404 25 100.0 39 ......................... ACTTTCTAGGTCTGCCCTGCCATGATAGGGGTCAACCAG 1978340 25 100.0 40 ......................... GACATTACTTTCTGAAGAAATTGAATTTATGGGAACACAA 1978275 25 100.0 36 ......................... TGGGAAAATTTCTGATTAAGAGATATTCCTCACCTG 1978214 25 100.0 40 ......................... AATTGTGAGCCCATAGCATTACTTTTTTGTGTTCTCTGAA 1978149 25 100.0 35 ......................... TTAAAATCTAATTTTGCATCTACTTGTATTTTTAG 1978089 25 100.0 34 ......................... TTAGTCTGATTACCCTAGTCTTTCCGTTATGATC 1978030 25 100.0 37 ......................... TTATTTCCCTACATCTGTACTTTACACCTAATGTGTC 1977968 25 100.0 38 ......................... TTAATATGTTAGGGGCGATAAAGGATGCGTTCTTCTGA 1977905 25 100.0 41 ......................... CTTTGTAATTGCTGGGCTGATGCAGTATAGTTCTGGCTCTG 1977839 25 100.0 39 ......................... AGACCCGAATTTTGCGTTTGCATTTTCATTTTTCTTTTC 1977775 25 100.0 40 ......................... TTCAATACGAGCAGAAGAACTTGCTGGGTAACCTTACCCT 1977710 25 100.0 40 ......................... TTACTATGTCAGTATATTTTACTCTAATGACTGGAGAAAA 1977645 25 100.0 38 ......................... TTAAAAAAATTGAAGGACGTAACGATAAACTCTGTAGT 1977582 25 100.0 40 ......................... CCTCAATCCGAGTCGTTAAGCGTGTTAATACTCGCGATAG 1977517 25 100.0 40 ......................... AGAACATATAGCTATATGTATAGTTGCCCTGCTGGTCTAT 1977452 25 100.0 39 ......................... ACAACTCGACAACGAAGGAAATTTGCAGTACGTCATTAC 1977388 25 100.0 38 ......................... ATACAGTATTGTCTCTCTTTTTCACATTCAAACCGAAA 1977325 25 100.0 40 ......................... GTGCTAGAGAGCTACACAACTTATACGCTAGGTCCAGGTT 1977260 25 100.0 39 ......................... TTTTCAAGTTTGGGTTTAAAGCTCTCTTGTCTCAACCTG 1977196 25 100.0 39 ......................... TTCTGCAACCCTCGCTATCTTTATGCTGTAGTTGTAGTA 1977132 25 100.0 39 ......................... TATTTACTTAAAATAGAGTGTTTTCTTAAACTTGAAAAA 1977068 25 100.0 37 ......................... TCTAGAACTTTTGGAGCTATTTCGTCGGGAATCATAA 1977006 25 100.0 41 ......................... TATAGCTTATCCGTTTCGTTAGTTTCCAAATTTTGGCATTA 1976940 25 100.0 38 ......................... CTGGACTGTTAAAGACCAGCGAGATAGCCGGGAAGAGG 1976877 25 100.0 40 ......................... TTAATGTTTGGAGCGACGAGGGCTACAGTAACACTACCAG 1976812 25 100.0 37 ......................... CTTTTAACAGGATGGGATGTCCATCACTATACCACCC 1976750 25 100.0 40 ......................... CAATAAAGCTATAATAGATCTTATTGTCGTGAAAGTTTTA 1976685 25 96.0 39 ..........A.............. TGTAATCGCTTCTCCCTCTCCTCTTCTTGGGGAGAGGAG 1976621 25 96.0 39 ..........A.............. GGTTTGGATTCTGATCTGTTCATCTTTTTCACCAAGCTA 1976557 25 96.0 40 ..........A.............. AGGGCAAAGATACGTAGGATCCTATCATCAATTCAACGTC 1976492 25 92.0 38 .......T..A.............. CCCCATTAACCGGTTTCAGGGGGTCGGGGGTCTGCCGG 1976429 25 92.0 39 ...A......A.............. TTTGAATCTCATCGTTATCAAACTCGTGTACTAGCAACT 1976365 25 92.0 41 ..........A.............A TCGTCATTGACCCACCCCTGTCGCTATCACGCCCCCCCTCA 1976299 25 72.0 41 .C........A.....T.AA...GT TTTAGAAAATACATAATACCATGCGGGACATTAGGTGTCCT 1976233 25 72.0 0 ...C.T....A.....T..CT..G. | ========== ====== ====== ====== ========================= ========================================== ================== 69 25 98.7 39 GTTGCATCCAGAAAGGAATTGAAAG # Left flank : AAGGCTCCCCTTAGCGGAGACAAAAGCCCACGTTAGTCCAGACAAGGTAATTCTGACGTAAATTCTTCACGCCTGTTAAAACTTTTTAGCTTGTCACGGCTATTAATCGTGAAAAAGGGCATGTTTAAAAAAGGTATTAAATACTAAACGGTATCCTTGATTTAGACAATGTTTTGTAAAAAGGGTTTATAATAGATAGTTTTTAGTCGGAAACTACGTAATAATGAAACTTCATTTCCCTGATTCGAGAAATAGACTTAAAGTTAAGTGCGAATTGTAGAGAAGACTGGTTCGAGCCTCAATGCGACCAGTACTAATATCTCCCGTAATTTTGAACGTTTAAAAGCCATGTACACCTTTTAATCTTACGTAAAGACCATGCGACCATGAAACGTAGAGGTAATTACAAGGATATCAGGTCGCATGTAGGCTCAGGTGAGGGTAGTAAAGTTTATTATAGGAGAAGGTGAAAAAGAAGTAACAGGATAATAAATACCTAA # Right flank : TCAGTAAGGACTGAATCTAAGTCGCGGCTCGCTGACCTTATTTTACCTCAAATATTGAGAGGACTGACAAGGGACGGGCGTGTCATCCAAGTTCTTCTCCTGGAAACACCATTATGGGAGCGAGGCCTAGTCTAATCACCCATCTTGCGAACCCGTACCTCCTTTAAAAGAAAACAATGGTCCTGGCCTTAGTCGTATAGAGGTCGCAGAGGTAACCTAGGCACTGTTCCGGCCTGTAAACCGCCAACGCCCTGTCCCTGATCTGTACCATCCTCCCCTTTACCCTGTCGTACTCGTCCTCCCCGATTATACTGGTCACCAGATGAGCTCCTACCTCACGTGCCCCAAGGACTGCTGCTGAGCTGATCGCCTTCCTACCGCCGCTGAAGTCCAGGTAGTCCCCAGGACGTAAAAGCCCCTTTACTTTCTCCCTCACGAGCACGAAGTCCTGAGGTGTACTGACGTCGTCAATGTCAAGCCTCACAGCCCTTACCTTGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCAGAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 4 1986469-1990488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049074.1 Metallosphaera tengchongensis strain Ric-A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 1986469 25 96.0 39 ........T................ TTCCTTGGGTTTATAAATATCACAAGTTTAACTAATATA 1986533 25 100.0 40 ......................... TTAACGTCTTTTATTGTTACGTTGCCATACTCATCTATAT 1986598 25 100.0 40 ......................... ATATTATATTCATTCATAATATCATATACTGTGATTTTGC 1986663 25 100.0 40 ......................... TTCATTCTATGTTTCTCGGGAGGGTACGGTGCTGGGTGAG 1986728 25 100.0 40 ......................... TTTGTTGTGTTTGACGCATAGTACTGAATCAAGGGCATAT 1986793 25 100.0 40 ......................... CCTCTTCAGTACTAATTCCTAGCCTCTCTTGCACTTTCTT 1986858 25 100.0 41 ......................... TTCATGGTAAACCAATCCTGCCTCCTCACATTCATTGCGGT 1986924 25 100.0 40 ......................... TTAATGGATGCAAGGTGGATCCGAGGTGGGCAGTACCCAT 1986989 25 100.0 39 ......................... CTAAGTATCGCTGAGACCTTGTCGAGCGTGATTATGGGC 1987053 25 100.0 38 ......................... ATGTTCTCACCCGAATATTTCCTCTACCGTTGCAACTT 1987116 25 100.0 38 ......................... ATCTTCCACGGAAAAGAGGGCATCGTTGCGTACTGTTC 1987179 25 100.0 40 ......................... TATTATAGTACCTTCCGCTTCTGGTTCTGGAATACAACAG 1987244 25 100.0 53 ......................... TCTTTTTGGTTTTGAGTTTTGAGGTTTTCACTCATATCATGTTGCATCCTTAG 1987322 25 100.0 37 ......................... TTGTAAAGGGAGATATAGTTATATCCCCTATGTATGA 1987384 25 100.0 36 ......................... TGCGGTCAGGGGGGAAGAACCTAGCCTTGCAGCAGA 1987445 25 100.0 38 ......................... TTGGATCTCCCTGAGGGGCTCCAAGCCGAGGTATAAAT 1987508 25 96.0 39 ..C...................... TCTGCTATGGTAAAGTCATAATTTTGTGGGACTTCTGTG 1987572 25 100.0 39 ......................... CTTTCGCGATGTCGGAGAGCTCAGAGAGAAAAATGAAAG 1987636 25 100.0 39 ......................... GGATCATCATATATTCCTGCATAAAGACTTTTTATTTTC 1987700 25 100.0 37 ......................... AATATATTTCTTCGCTGGAGGAAATTGTTGTAAATAC 1987762 25 100.0 41 ......................... ATATAAGATATAGATATGAAAGAGTTGTAAATGACTTTTTG 1987828 25 96.0 40 .A....................... ACCTTTTACAGGTAGTTGCGTTTCTATTCTTTCATCATAG 1987893 25 100.0 38 ......................... TGTCGGGTAACAATATAAAAAGAAGGAGAAGACAAGTT 1987956 25 100.0 39 ......................... TATGGAAACAAGTCCTCCCGTTTGATGCCGAAGAGCAGT 1988020 25 100.0 39 ......................... CGCGGGTTTCGAGCCAGTTCCCTCCCCTAAGTTATTTTC 1988084 25 100.0 36 ......................... TTGGTCAAGGGCTTTACCTTCTCGAGGACACGGTTC 1988145 25 100.0 36 ......................... CGAAGTAGCGTTCGGGGCTACATCTGCGTGCGATAC 1988206 25 100.0 39 ......................... AGATACCTGAAGGATGAGAGGAGGTGGGACGGGAGGAGC 1988270 25 100.0 39 ......................... AATGTAACGACTATAGCACAAGAAAATTTCCAGACTAAC 1988334 25 100.0 40 ......................... CAAGACCACGTACTCACTCGTGGTCGATGTGGACGAAAAG 1988399 25 100.0 44 ......................... GAATACATCCCTTCAGTCACAAACCCTACTTCAGGGTAAGTGAC 1988468 25 100.0 40 ......................... ATGTACTTCAGGTTGGTGGGATGATGGTCTATCATAGTAA 1988533 25 100.0 37 ......................... TGACCATGTTATCCTCGACCGTGACGTAACGACCTTT 1988595 25 100.0 38 ......................... TTTTATGAAAGTAGATGATCTAAAAGCAGGTTTATGGA 1988658 25 100.0 39 ......................... ACCTACCCCTCTGCTGCATCCAACGGAGAGGGGAGAGAG 1988722 25 100.0 44 ......................... TAAAGACTGACTTTAGAACAGGAACTGCATGGTTCAGAACCAGT 1988791 25 100.0 40 ......................... GAATCAGGTATAGAATAAAAATCAATTTGAGTCTCTTCAA 1988856 25 100.0 40 ......................... ATTTAGGGAACGCGTCAAGGCGGGCGATTAACATGAACGC 1988921 25 100.0 40 ......................... TCATTAATTTCTTTATTTAAGTATTCATTTAATATTTCAA 1988986 25 100.0 40 ......................... ATGATCCTCTTCCTTGCATCCTTCAAAGTCTCACTGACAG 1989051 25 100.0 39 ......................... TTCCTTATCAATACGTCATACTTATTAGCGATCGGTAAG 1989115 25 100.0 39 ......................... TTTTCTTTCTTCAAATCCCTCTTTTTCTTCAGCTCTTTC 1989179 25 100.0 39 ......................... ATGACCTCCTCCCTTGGTGTATCAGGCCCCACCTCCGAG 1989243 25 100.0 39 ......................... TTCAGGAGGACTTTCGCTTGACTGAAAGCCTTGCCTATT 1989307 25 100.0 39 ......................... TTAGGAATCTGTTCCACCTTTTTCACCCCCTATATTCTC 1989371 25 100.0 36 ......................... TCTCTTTAGTGATTATAGTGATAGTAGTCACACCCT 1989432 25 100.0 40 ......................... ATTAGCAACTTCTTATCAACAGCCCTCAGGTAAAGGTCTC 1989497 25 100.0 40 ......................... GGAGGGCCACAGGGGATGCGGGAATCGAGATCCTAGGCGG 1989562 25 100.0 36 ......................... CTAGCTACCCTTGCATACCTGTACGAATACACGTAG 1989623 25 100.0 39 ......................... AATTTCTTCCTGATCTCCTCAAGCTCTTTCTTCACGTTC 1989687 25 100.0 39 ......................... CTTCTTTCTAGGTGGCTTTATCTTGAGAATTACTTCAGG 1989751 25 100.0 39 ......................... ACAACTTGAACTTACAGGCCCCTCAGGTTGACGCAAAAC 1989815 25 92.0 38 ............G.T.......... ACTCCTCATTCTCTTTAGTCTCTTTGCTAAAATAATTG 1989878 25 100.0 39 ......................... ACTTGTTCCGCCAACTCAGGCGGCGCCTTCATTTCTGAG 1989942 25 100.0 40 ......................... TCACCGTAGGGTTGAGGTCAGGATACACAAAAAACACTAA 1990007 25 100.0 42 ......................... GTCTAAGTATTTCTCTAATCCATACACTACAACTGCGTCACT 1990074 25 100.0 39 ......................... CTCAACAATTTGCCAAACGTTAGCAAATATGTGAAATAC 1990138 25 100.0 43 ......................... TCTTTTCAAAAACTAATGATGCCCCTGAAGAGACCTGGTTCAT 1990206 25 92.0 40 ....A..........A......... GTGTAGATCTCGGTTGCCTCATCAACGCTGTTTAGAATTG 1990271 25 100.0 39 ......................... CTAATTACTTCAGACCTAAATTTATTTTCCTTCATACAT 1990335 25 100.0 41 ......................... TTAGTTAGCTGTTGCACTAACTCGTTTCTCATCTCCGCCAA 1990401 25 100.0 38 ......................... ATACTAATTTTAAACAATTAAGTTTTACCAGTAATAAT 1990464 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ===================================================== ================== 63 25 99.5 39 GTTGCATCCAAAAAGGAATTGAAAG # Left flank : ATTAACTGTGGTTTCTTCTACGCTTGCAGGCCCCGAAGGCAGGGGAAGTTTTTCGTCAGGGAGCTGTGAAGCAGGTAAAAACTTTTTAGTTCGGTAGGTTCCCGTAAAAGGATAGAACCTCGTGCATAAAAGGGGTAAATTAACTTTGTTATACCATAGGTTTTAAAAGTGTATAGAACAGACCGCAGTTTTCTAGATAGAATTCAGTATTGAAATTCGACTTTCGTAAAAGATGTAGGAGTTATCAATAATAGGTCTTACTCCTTAGTGAATGTCTAGGAGGTCGATGGTTCGTGCCTCAATGCGACCGGTACTAATATCTCCCGTAATTTTGAACGTTTAAAAGCCATGTACACCTTTCAATCTTACGTAAAGACCATGCGACCATAAAACGTAGAGGTAATTACAAGGATATCAGGTCGCATGTAGGCCCAGGTCGGGGTAGTAAAGTTTATTATAGGAGAAGGTAAAAGATAGGTAATAGGTTAATAAATACGTCT # Right flank : ATTATCGGCTTCAGCGACTCGAGGAGCCCTGTGCTCTGTTGCGTCCAAAAAACCTGAAAAGTACTACTTGACCAAGCTTACCTTAACGCTGCCGAGTACCTTCGTGCACGAGCATCTAGTTTATAAATTTTGTTTACGTAATACCGGTATTATCAGACCGTGTCATGGACCTTGGGTCCCACGTCTTAAAGTTTATTAAAAAGGATGAGGTCATATAATTATGGGGGAGCAGGGCGATGGGAAGAAACTGGCCTTTGTCAAAGACTACGGTGCTTACCTCAGGGTTAACAAGGGCATGATAGTGTGTGAAGTTAAGGGGCGCCAGATATGGTCCGTCTCGCCAGCTGAGCTGTCTTCCATAGTCGTCATAGCCACGTCCTCCATCTCATCGGAGGTGGTCAAGTTGGCCTACGAGTACGGGGTGGACTTAGTCTTCTTTGATAGGTACGAACCCATAGCTAAGCTGATCCCAGGTAAGTACGGTGGGTCCATGAAGCTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCAAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //