Array 1 43703-42743 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VYJL01000025.1 Streptococcus agalactiae strain GNUCH_SAga_14 25, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     43702	    36	 100.0	    30	....................................	ATGCGGTCACTCATATAAGACATCTCCTTT 	
     43636	    36	 100.0	    30	....................................	CCCAGTTGCAATGACTGCGCCAGAAGTCGG 	
     43570	    36	 100.0	    30	....................................	TAATGGTTTATCTCTTTTTTCATCTGTTAT 	
     43504	    36	 100.0	    30	....................................	AATTATCAATGTTTACAACTGTTTTAGTTT 	
     43438	    36	 100.0	    30	....................................	TAAAATCCTGAAACAGAATGGGATTGATAT 	
     43372	    36	 100.0	    30	....................................	AAAATCAGAACGCCTTATTTGAAGCAGTTA 	
     43306	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT 	
     43240	    36	 100.0	    30	....................................	CCGATTATTTCCTACATAATACGCACGTTT 	
     43174	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA 	
     43108	    36	 100.0	    31	....................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
     43041	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC 	
     42975	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT  	
     42910	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
     42844	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT 	
     42778	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//