Array 1 230120-230683 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMJG01000001.1 Lactiplantibacillus paraplantarum strain KMB_599 NODE_1_length_233044_cov_56.8989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 230120 36 100.0 30 .................................... CTTCCTATTGTATAAAGTATTTATTGCTGA 230186 36 100.0 30 .................................... ATGAAGGCAGATTTTGATTTTGGTCGCCAG 230252 36 100.0 30 .................................... TATGCAACTCAATAGGAAAATGACCGACCT 230318 36 97.2 30 .............G...................... TTTTTGAGCTGAAGCTAACAATTAATATTA 230384 36 100.0 30 .................................... ATGAGTTCTTAGCATTGCACGGCGCCTACA 230450 36 100.0 30 .................................... ACGTTCTAATGGGTACCAAGTCGTTTATGA 230516 36 97.2 30 ...............C.................... AAGGAAGGTGCCAGATAGTGTCGAGAACGT 230582 36 97.2 30 ............T....................... ATTTTTTCCTGCACTCATCTATGAGCCAGG 230648 36 91.7 0 .C.............C...........A........ | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGTACTATTGAGGTCAATCAGTATTTGACCAAGTTAGAACGGCTGATTAGCGAGTCACTAACAGACGAAGACCGTAATCAGATTCATGATTGCTTAAGTAAGCTGTATTCAGCAGTGGAGCAACAGCTTTTCCTGACAGATTTGCCACTAGAAGTAACCTATGACTTTGACATGAAGCACTTGCTAAAGTTTGCCAAGATTCATTTTGACGAGAAGTGGCAGACTAATCCGTATGATATAATTGAGTCAATATTAAAGGTTCATCAGGAGTGCGATATTGAATCTTGTGTGGTGCTGACCAATGTTACACATTATTTGACTGCATCACAAATGCATGAGCTTGAAGACAGTGTGGTAGCGACTGGACAATCGCTACTGTTATTGGAGTTCTGCAAGATGGATCAACGCGATTACTATGATGTTGGGTCGTTCAATTTTATTGATGAAGACTTTGTTGATTGGTACTAATGGAATGTTAAATTTCGATTAGAGATTAACG # Right flank : CAGTAGCATGGTTAATTGCTTTATAAGTACTGTTTCAGAAGGACATTGATTAATATGATTATGCCTTAGCTATCGGTTGATAACTATGCTGTGGGCTTTAGAGAGAATGGTGAGCAGCAACTAGTTGCGAATAATATTTACAGGATAATTACTTTCACTTCGCAATATCCAATCCGTTGCCAATCCCCAAACTGGCGCATGACCTCACTATGAGTGACACAGGCGATACACTGGTAATGCTGATACTTATCAAAGACCGCTTGGACACGGTGGCGAATATCAGCACTAGTTTCGTAGTCCCAGACTTGAGAATCACTAGCTTGACCATGGTTGGCAGTATATTCATCGTAGGCGGCCATTGCTTGACGACCGCTTTTTATTTGCCAGCCTGATTTATCAGGATACCATTCATGAAGGCCTAACTCGACTTGTAATGGTCGGTTATGCCGTCGGATGATTTCAGTTGCGGTTTGCAGCGCTCGAGTATAGGGCGAGGCTAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 31846-32056 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMJG01000006.1 Lactiplantibacillus paraplantarum strain KMB_599 NODE_6_length_127772_cov_38.7342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31846 29 100.0 32 ............................. GGTACCCCGTTTTCACGAACGGCAATGTAGCG 31907 29 96.6 32 ............................T TGCATGCAGCGGAACAGATCTAAGTCGCTCGT 31968 28 96.6 32 ...............-............. CAGTCCACGCAAGCGGTTAGCGATTTTTTGCT 32028 29 82.8 0 ...........T..C........A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 CTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : ATAATCATTGTACCGTGTAATCTCTGTTCACTGATCTTACTTTCATTGGATCTTTATTTTAAGTTTCTAGCTGTCTGTAAAATAATTTCAAAAATTAACTATATCTTATATTAACATTTAAATTTTAAAGATTCAGCTTCATACTTAATAAAATATGGCTATCTTTATCTAAACTATTTATGTGAAGAAAAATCGTTGAAACGGTAAATAATTTTGCATTATAGATGAGATATGTATTTTACAAGCCTAGCCCTTGTTGTCCACCACATAGTTATTGTTATTCATAAATTTATCGCTTAACATTTTTGTATCACACAATTTGCATGACCTAATAATTTCAATCAGTACTCACAGCAAGTGCAAATTCAATGCTATGAAGACCGCTTTGCTACAATGCCTCCTTGCTTGTATGGTTAATATTAATGGCAACAATCAAGCAAGTTGACTTAAATCTCTCAAGTACTGATTTAATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATATAAACAACAAATCACTTTCAAACAAATACAACTCCACAAATATAAAAGTGAATGCTTCACACGTCAGCACGCTACAAAGTCTCACTAAATATTTAAAGAACCGTCTTTAATCAACTTGTGGGCTAACGCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACGATTTGATAAGCCGCTAACACCGTTGACAAGCGATAATTATCTAAGAAAATATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTCTGATTGGTCAATCCTTCTATGTCTTTTTCTATCAATGCTTGCTTCAAGAACATTTCGTCAAAATGAAAATTATAGCCTACGATTACACTGTTACCGATAAAGACCTTCATTTCACTTAACGCCATAACTATCGAAACACCTTCCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGGCAACAATCGATCAATTTTTATTAGTCGG # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38017-38166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMJG01000006.1 Lactiplantibacillus paraplantarum strain KMB_599 NODE_6_length_127772_cov_38.7342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38017 28 100.0 33 ............................ TGTTGAAAGTCCCAGTCCCGTCGGTTGACTTTA 38078 28 100.0 33 ............................ CGTGCACGAGAACCCGGATCTATTGGAGGCAGA 38139 28 92.9 0 ...........A..............T. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TTACTGAAAATCGGCGCCCAATTGACCTTAAAAAACTAACTAAAAAACGCGGGACGTTTGCATGGGAATGGATGTACTCAAAGTCCTACTACCACACGGCCGACATGATTAGTCAGCACTACATCCTAGACACAATCGCGAATTTGCTTGATCACGACTTACTTAAAAGTACGCTATCGCAGACACTACAGCCGATTAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGTAAGGTAGTTATTGAAGGATGGGAATGATTTGACGTCATATTGCGGCTCAGGTAATCTACTTTAAATAGCCAAATACGTTGCTGTTTTCTGCTTCGTGGTGCTTACACATGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGCATCATACCTTATAGTCAAAGTAGCGATGAAGTTGCAAGTTAACTAAAATTCGCTGTTTGGTTATTTTGGATTGTTGATTTAATGGGATTTGTTTAGT # Right flank : CTAAGTTGTTAAACTTCCCACTCTGAAGCTACGTCGTCCCTAAAATAATTGCGGCCTTTCTCATTCATCGACCAGCATAAAAACTGAAAGCAATAATCCATCGAACCGCTACCTACCACCAATAAGACAAACCTATGATATCAAATTCGCTTACTCCAGCACCGATTGTCGTTAAAACTGCCAAACTTTCTTTTTAAGTTTCCAAAATATTAGTGCTATGATAATAGCATAATTTTGACTAAATTTTTTTAATCGGAAAGGACTTTGAAATTGGCATTTAAAACACCGTTGGCTGATCAAATGCGGCCACAATCACTGGATCAGATGGTCGGACAACAGGACTTGTTGAAGTCGGGCCAGCCACTGCGCCAGATTATTGATCAACACGTTAATATCCCCCTCATTCTGTGGGGGCCGCCGGGAACCGGCAAAACCAGTTTGGCACAAATCATTGCCAGCCAAGACGACTATCCCTTCGTAGCTTTTAATGCTTCGACTGA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //